Gene: COL.COLO4_15200

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_15200
  • Transcript Identifier COL.rna13984
  • Gene Type Coding gene
  • Location AWUE01015611.1 : 33138-36889 : positive

Gene Family Information

  • ID HOM05D000725
  • #Genes/#Species 800/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna13984
  • GenBank OMO96573.1
  • id gene15172
  • gene_name COLO4_15200
  • uniprot A0A1R3JP49

Descriptions

  • Description SNF2-related protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900111
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation AT2G16390
GO:0032776
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine AT2G16390
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT2G16390
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT2G16390
GO:0010424
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequence AT2G16390
GO:0071360
ISO
PLAZA Integrative Orthologycellular response to exogenous dsRNA AT2G16390
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT2G16390
GO:0060964
ISO
PLAZA Integrative Orthologyregulation of gene silencing by miRNA AT2G16390
GO:0060968
ISO
PLAZA Integrative Orthologyregulation of gene silencing AT2G16390
GO:1900368
ISO
PLAZA Integrative Orthologyregulation of RNA interference AT2G16390
GO:0060966
ISO
PLAZA Integrative Orthologyregulation of gene silencing by RNA AT2G16390
GO:0070829
ISO
PLAZA Integrative Orthologyheterochromatin maintenance AT2G16390
GO:1900370
ISO
PLAZA Integrative Orthologypositive regulation of RNA interference AT2G16390
GO:0035563
ISO
PLAZA Integrative Orthologypositive regulation of chromatin binding AT2G16390
GO:0080188
IEA
GOA Databasegene silencing by RNA-directed DNA methylation
GO:0080188
IEA
InterProgene silencing by RNA-directed DNA methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G16390
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G32330
GO:0005721
ISO
PLAZA Integrative Orthologypericentric heterochromatin AT2G16390
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G16390
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT2G16390
GO:0090577
ISO
PLAZA Integrative OrthologyRNA polymerase IV transcription regulator complex AT2G16390
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR015300 DNA-binding pseudobarrel domain superfamily
IPR038718 SNF2-like, N-terminal domain superfamily
IPR003340 B3 DNA binding domain
IPR044567 SNF2 domain-containing protein CLSY/DRD1
IPR000330 SNF2, N-terminal
IPR001650 Helicase, C-terminal
Mapman id Description
12.5.1.14.1 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.DNA methylation accessory complex (DDR).component DRD1