Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 0.0e+00 1575.1 795 100.0
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 0.0e+00 1380.5 796 89.7
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 1.7e-271 939.5 815 61.0
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 2.5e-267 925.6 798 63.8
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 9.9e-264 913.7 788 61.5
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 2.9e-263 912.1 788 61.4
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 4.6e-261 904.8 824 58.9
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 2.5e-251 872.5 927 53.1
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 1.1e-249 867.1 728 62.8
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.1e-249 867.1 761 62.0
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 2.4e-249 865.9 791 59.4
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 2.0e-248 862.8 814 58.1
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.4e-246 856.7 759 61.3
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 2.5e-246 855.9 763 60.9
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 1.3e-244 850.1 759 60.9
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.9e-243 846.3 772 58.7
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 5.7e-243 844.7 786 58.4
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 4.1e-241 838.6 798 57.5
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 5.3e-241 838.2 796 55.2
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 5.3e-241 838.2 815 56.9
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 1.2e-240 837.0 739 59.9
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.2e-240 837.0 794 58.6
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 2.7e-237 825.9 756 58.9
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 3.6e-237 825.5 778 57.3
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 1.8e-236 823.2 758 59.8
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 2.8e-234 815.8 757 57.7
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 1.1e-233 813.9 787 56.4
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.4e-233 813.5 791 56.6
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 2.4e-233 812.8 813 55.8
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 2.6e-232 809.3 797 54.6
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 5.0e-231 805.1 798 54.1
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 4.2e-230 802.0 791 55.8
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 7.2e-230 801.2 831 53.1
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 7.2e-230 801.2 786 55.1
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 2.7e-229 799.3 783 55.7
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 1.1e-227 793.9 761 55.5
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 1.5e-227 793.5 705 57.7
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 2.2e-226 789.6 1135 43.7
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 4.5e-224 781.9 756 55.3
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 1.7e-223 780.0 757 56.1
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 3.8e-223 778.9 766 55.7
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 6.5e-223 778.1 786 54.3
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.1e-222 777.3 824 53.5
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 5.5e-222 775.0 791 55.1
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.2e-222 774.6 804 53.4
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 6.1e-221 771.5 786 53.9
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 2.6e-219 766.1 775 52.4
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 9.7e-219 764.2 810 52.3
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 4.8e-218 761.9 786 53.2
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 6.3e-218 761.5 728 57.4
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 6.3e-218 761.5 757 53.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 5.9e-216 755.0 795 53.0
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 3.8e-215 752.3 809 51.7
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 1.1e-214 750.7 761 53.0
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 1.2e-213 747.3 793 53.0
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 2.7e-213 746.1 799 52.2
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 3.0e-212 742.7 806 51.0
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 1.2e-211 740.7 792 51.5
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.5e-211 740.3 767 52.8
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 4.4e-211 738.8 795 52.2
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 9.8e-211 737.6 764 52.5
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 2.2e-210 736.5 823 50.9
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 3.7e-210 735.7 817 49.9
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 6.3e-210 734.9 810 51.4
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 1.4e-209 733.8 769 52.5
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 9.1e-209 731.1 766 52.3
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 1.2e-208 730.7 656 57.9
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 1.2e-208 730.7 744 53.6
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 1.6e-208 730.3 769 52.4
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.0e-208 729.9 714 55.7
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 4.5e-208 728.8 794 51.4
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 7.7e-208 728.0 720 54.6
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 6.5e-207 724.9 759 52.6
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 5.5e-206 721.8 771 49.7
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.6e-205 719.2 794 50.9
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 6.1e-205 718.4 720 53.6
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 6.8e-204 714.9 763 51.9
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.2e-203 714.1 817 50.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.2e-202 709.9 745 52.9
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.2e-202 709.9 736 51.4
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 4.9e-202 708.8 739 54.1
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 3.1e-201 706.1 754 51.2
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.0e-199 701.0 709 54.2
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 2.9e-199 699.5 807 49.7
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 2.5e-198 696.4 751 51.8
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 3.6e-197 692.6 736 50.3
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 4.0e-196 689.1 689 51.7
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.1e-193 681.0 761 51.1
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 6.6e-191 671.8 638 56.4
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 9.2e-185 651.4 691 51.5
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 9.5e-182 641.3 657 53.9
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 1.4e-177 627.5 721 46.6
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 3.6e-173 612.8 663 51.4
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.9e-170 603.2 737 47.2
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.2e-169 599.7 723 48.3
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.0e-159 568.2 645 47.1
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 7.9e-152 542.0 820 41.7
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.9e-145 520.8 561 52.6
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.5e-142 510.4 704 43.9
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.6e-120 436.4 430 57.2
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 1.2e-115 421.8 759 39.1
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 2.9e-106 390.6 432 48.6
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 8.0e-104 382.5 373 57.6
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 8.8e-103 379.0 657 37.3
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 3.7e-101 373.6 697 35.6
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 2.0e-99 367.9 622 37.8
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 5.7e-94 349.7 268 65.7
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 4.4e-86 323.6 562 39.3
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.8e-80 304.3 361 46.5
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.0e-79 300.8 718 33.3
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 4.9e-77 293.5 598 33.6
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 2.3e-66 258.1 694 34.3
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 7.1e-52 209.9 222 47.7
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 1.7e-50 205.3 637 29.4
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 4.3e-49 200.7 661 27.7
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 5.3e-39 167.2 237 44.7
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 3.8e-37 161.0 696 24.6
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 4.0e-31 141.0 171 46.8
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 4.0e-31 141.0 226 41.2
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 6.0e-27 127.1 145 49.0
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 8.7e-26 123.2 149 48.3
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 3.8e-21 107.8 113 51.3
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 1.6e-16 92.4 92 53.3
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.4e-15 89.4 71 63.4
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 9.0e-15 86.7 73 60.3
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 6.5e-13 80.5 134 36.6
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 7.2e-12 77.0 192 32.8
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 3.0e-10 71.6 587 20.6
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 6.7e-10 70.5 65 50.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-06 59.7 48 50.0


User provided reference genes

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