Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 2421.4 1467 100.0
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1715.7 1387 78.7
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1663.7 1488 69.7
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1624.4 1488 68.1
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1366.3 1477 61.5
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1208.0 1541 51.4
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1201.4 1527 55.2
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1197.6 1526 53.0
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1197.6 1500 52.7
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1191.8 1503 51.2
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1173.7 1534 52.9
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1169.5 1517 55.2
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1158.3 1518 53.8
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1155.2 1496 56.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1147.1 1483 53.9
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1143.3 1421 54.8
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1130.2 1522 52.0
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1110.5 1492 50.5
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1102.8 1512 50.0
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1100.5 1500 51.8
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1100.5 1495 51.9
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1090.5 1517 52.3
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.0e-311 1073.9 1494 51.1
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 1.0e-311 1073.9 1528 51.6
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.0e-311 1073.5 1494 51.1
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 3.8e-309 1065.4 1508 50.3
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 2.1e-307 1059.7 1502 50.9
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 6.6e-306 1054.7 1512 52.4
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.6e-306 1054.7 1516 52.9
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.2e-304 1048.1 1512 53.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 6.2e-304 1048.1 1565 49.7
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.8e-303 1046.6 1536 51.0
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 8.4e-301 1037.7 1491 49.8
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 2.4e-300 1036.2 1490 49.9
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 3.2e-300 1035.8 1531 52.1
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 1.6e-299 1033.5 1524 51.5
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 3.9e-298 1028.9 1484 48.2
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 4.3e-297 1025.4 1497 49.2
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 5.6e-297 1025.0 1483 48.0
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 1.1e-295 1020.8 1496 48.5
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 5.3e-295 1018.5 1492 49.0
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 5.3e-295 1018.5 1502 48.5
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.2e-293 1013.1 1554 50.0
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 8.4e-293 1011.1 1568 49.9
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 3.2e-292 1009.2 1504 52.3
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 5.5e-292 1008.4 1493 47.8
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 1.1e-289 1000.7 1497 48.6
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 9.6e-289 997.7 1506 48.7
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 2.1e-288 996.5 1510 48.9
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 8.2e-288 994.6 1499 47.0
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 2.3e-282 976.5 1505 46.7
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.5e-281 973.8 1489 48.0
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.8e-279 966.8 1502 46.5
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 2.0e-278 963.4 1496 48.5
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 6.5e-277 958.4 1494 46.2
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 1.8e-274 950.3 1344 54.2
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 8.8e-274 948.0 1523 50.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 2.6e-273 946.4 1506 44.9
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 7.4e-273 944.9 1056 54.0
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 2.2e-272 943.3 1526 46.9
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.3e-269 934.1 1498 46.6
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.3e-269 934.1 1493 46.0
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.3e-266 923.3 1483 47.5
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.1e-263 912.9 1337 46.6
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 2.2e-261 906.7 1492 46.1
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.1e-260 904.4 1495 44.0
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 4.4e-257 892.5 1355 48.8
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.3e-256 891.0 1561 47.5
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 3.8e-253 879.4 1495 44.5
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 1.2e-251 874.4 1497 43.8
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 7.0e-247 858.6 1274 48.0
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 1.2e-246 857.8 1355 44.6
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.2e-243 847.8 1060 49.2
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 7.0e-239 832.0 1523 50.4
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 3.5e-238 829.7 933 51.7
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 1.3e-237 827.8 968 50.9
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 8.6e-237 825.1 1558 41.1
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 9.5e-236 821.6 965 52.2
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.3e-232 811.2 1510 49.5
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 4.1e-231 806.2 787 60.1
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 4.1e-231 806.2 1353 41.3
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.2e-230 804.7 1532 41.7
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 4.6e-230 802.7 1543 41.8
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.0e-229 801.6 1330 42.5
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.5e-228 797.7 1518 43.7
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 4.3e-228 796.2 1515 43.2
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.2e-227 794.7 1516 43.3
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.0e-226 791.6 1522 42.0
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.1e-223 779.6 1494 38.6
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 5.4e-223 779.2 1360 42.8
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 3.5e-222 776.5 1306 44.1
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 3.3e-220 770.0 1548 41.1
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 3.1e-218 763.5 1548 41.0
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 1.2e-214 751.5 1502 42.5
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.9e-213 746.5 1522 40.1
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.9e-213 746.5 1522 40.1
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 2.5e-212 743.8 1522 40.1
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-211 741.5 1565 37.1
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 2.8e-211 740.3 1523 40.6
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.6e-211 740.0 1195 50.8
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 5.2e-210 736.1 1517 40.7
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 2.3e-205 720.7 1501 38.0
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 5.1e-205 719.5 1491 43.3
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 2.8e-203 713.8 1332 38.5
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 2.9e-200 703.7 825 51.3
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 4.0e-194 683.3 955 46.6
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 3.8e-192 676.8 1492 38.9
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 4.9e-192 676.4 1497 42.3
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 2.3e-189 667.5 1031 44.1
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.0e-189 667.2 1486 36.1
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 3.9e-189 666.8 1529 40.4
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 7.4e-180 636.0 1492 39.2
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.9e-173 613.6 1238 39.0
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 8.5e-168 595.9 1503 38.5
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.3e-165 588.6 1162 42.6
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.5e-164 585.1 1489 38.1
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 5.5e-159 566.6 788 47.1
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.6e-158 565.1 539 59.4
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 8.2e-139 499.6 1334 33.3
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.5e-135 488.0 1433 32.9
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 2.3e-133 481.5 1351 34.0
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 3.3e-127 461.1 1353 36.1
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 3.6e-126 457.6 1067 36.6
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.9e-119 435.3 1038 41.9
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.8e-109 402.1 1080 34.4
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.4e-106 391.7 310 66.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 2.3e-101 375.2 417 50.4
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 3.9e-96 357.8 1068 31.8
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.7e-89 335.1 1539 28.5
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.5e-79 302.8 488 41.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.6e-79 300.8 338 50.6
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 4.0e-77 294.7 1523 28.5
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.2e-74 284.6 1336 27.8
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 6.9e-69 267.3 443 44.7
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 3.0e-64 251.9 204 67.2
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 4.3e-63 248.1 1021 29.0
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.8e-62 244.6 1072 27.0
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.1e-58 233.4 209 63.6
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 3.2e-58 231.9 867 29.4
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.6e-57 228.0 974 28.4
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.0e-56 226.9 1433 28.8
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.0e-51 210.3 321 41.7
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 2.2e-51 209.1 341 40.5
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 2.5e-50 205.7 923 27.7
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 7.9e-49 200.7 377 38.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 4.8e-46 191.4 328 38.4
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 4.8e-46 191.4 281 44.8
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.0e-44 186.0 249 43.4
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 2.2e-43 182.6 282 39.7
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 3.2e-42 178.7 173 54.9
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.2e-41 176.8 951 26.8
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 3.9e-40 171.8 271 43.2
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 8.8e-40 170.6 263 41.4
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.2e-38 166.0 730 26.8
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 7.7e-36 157.5 681 28.5
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 2.7e-33 149.1 883 23.1
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 1.1e-31 143.7 713 36.9
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.2e-30 139.4 938 23.6
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 3.7e-30 138.7 84 76.2
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 2.0e-28 132.9 525 27.8
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 4.5e-28 131.7 219 59.4
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 6.5e-27 127.9 641 25.9
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 2.3e-24 119.4 1061 24.0
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 4.4e-23 115.2 144 46.5
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 2.2e-22 112.8 124 56.5
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.8e-21 109.8 176 40.3
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.6e-20 106.7 186 31.7
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 4.5e-20 105.1 950 23.8
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.0e-19 104.0 88 56.8
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 2.2e-19 102.8 172 37.8
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 1.2e-17 97.1 90 55.6
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 7.0e-13 81.3 86 44.2
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 9.1e-13 80.9 113 46.9
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 6.1e-09 68.2 71 53.5
SHI29645 Sapria himalayana HOM05D001849 ORTHO05D000062 1.2e-07 63.9 97 40.2
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 5.7e-07 61.6 70 52.9
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 7.5e-07 61.2 248 27.4
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 4.9e-06 58.5 52 50.0
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.3e-06 58.2 34 73.5


User provided reference genes

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