Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 1.3e-38 162.5 82 100.0
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.5e-29 132.5 75 89.3
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.1e-28 128.6 74 87.8
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 6.2e-28 127.1 75 81.3
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.1e-27 126.3 75 80.0
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.1e-27 126.3 75 84.0
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 5.3e-27 124.0 75 81.3
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 6.9e-27 123.6 78 76.9
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.0e-26 122.1 75 78.7
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.6e-26 121.7 75 77.3
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 5.8e-26 120.6 75 76.0
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 5.8e-26 120.6 75 77.3
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 7.6e-26 120.2 74 79.7
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 7.6e-26 120.2 75 77.3
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 7.6e-26 120.2 75 77.3
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.3e-25 119.4 75 74.7
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.7e-25 119.0 75 72.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.7e-25 119.0 74 74.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.7e-25 119.0 75 77.3
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.7e-25 119.0 75 77.3
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 2.2e-25 118.6 75 74.7
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 2.2e-25 118.6 75 76.0
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.2e-25 118.6 75 76.0
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 2.9e-25 118.2 74 78.4
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 2.9e-25 118.2 81 69.1
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 2.9e-25 118.2 75 76.0
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.9e-25 118.2 75 73.3
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.9e-25 118.2 75 74.7
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 3.8e-25 117.9 75 76.0
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 3.8e-25 117.9 74 77.0
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 6.4e-25 117.1 75 74.7
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 8.4e-25 116.7 80 73.8
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 8.4e-25 116.7 74 74.3
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 8.4e-25 116.7 75 76.0
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.1e-24 116.3 74 74.3
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 1.1e-24 116.3 75 74.7
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.4e-24 115.9 75 73.3
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.4e-24 115.9 75 73.3
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.9e-24 115.5 75 72.0
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.9e-24 115.5 75 74.7
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.4e-24 115.2 74 71.6
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.4e-24 115.2 74 71.6
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.4e-24 115.2 75 73.3
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 3.2e-24 114.8 75 73.3
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 3.2e-24 114.8 74 74.3
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 3.2e-24 114.8 74 74.3
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 4.2e-24 114.4 73 75.3
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 4.2e-24 114.4 74 74.3
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 5.4e-24 114.0 75 73.3
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 5.4e-24 114.0 76 71.1
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 5.4e-24 114.0 75 72.0
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 5.4e-24 114.0 75 70.7
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 7.1e-24 113.6 75 72.0
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 7.1e-24 113.6 77 74.0
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 7.1e-24 113.6 72 75.0
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 7.1e-24 113.6 73 75.3
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 7.1e-24 113.6 73 72.6
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 7.1e-24 113.6 72 75.0
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 7.1e-24 113.6 75 77.3
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 7.1e-24 113.6 75 77.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 9.3e-24 113.2 74 74.3
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 9.3e-24 113.2 72 72.2
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 1.2e-23 112.8 75 77.3
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.6e-23 112.5 75 69.3
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.6e-23 112.5 73 72.6
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 2.1e-23 112.1 75 72.0
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 2.7e-23 111.7 74 71.6
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 3.5e-23 111.3 75 72.0
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 3.5e-23 111.3 75 72.0
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 3.5e-23 111.3 69 76.8
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 3.5e-23 111.3 75 72.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 3.5e-23 111.3 68 76.5
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 3.5e-23 111.3 69 76.8
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 3.5e-23 111.3 69 78.3
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.3e-22 109.4 77 71.4
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.3e-22 109.4 64 79.7
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.8e-22 109.0 78 65.4
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 2.3e-22 108.6 68 76.5
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.9e-22 107.8 75 68.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.9e-22 107.8 73 68.5
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 3.9e-22 107.8 69 72.5
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 5.1e-22 107.5 74 67.6
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 6.7e-22 107.1 74 67.6
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 6.7e-22 107.1 74 67.6
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 6.7e-22 107.1 73 69.9
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 8.7e-22 106.7 69 71.0
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.1e-21 106.3 64 79.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-21 106.3 69 72.5
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-21 106.3 69 72.5
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.5e-21 105.9 74 66.2
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.5e-21 105.9 61 83.6
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.5e-21 105.1 75 68.0
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 2.5e-21 105.1 76 67.1
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.3e-21 104.8 66 75.8
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 4.3e-21 104.4 69 68.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 4.3e-21 104.4 77 63.6
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 9.6e-21 103.2 64 75.0
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 9.6e-21 103.2 66 71.2
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.3e-20 102.8 100 54.0
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.8e-20 101.7 70 68.6
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 3.7e-20 101.3 73 65.8
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 6.2e-20 100.5 83 61.4
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 6.2e-20 100.5 81 64.2
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 3.1e-19 98.2 64 71.9
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 3.1e-19 98.2 64 71.9
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 3.1e-19 98.2 64 71.9
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 3.1e-19 98.2 73 67.1
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 3.1e-19 98.2 73 67.1
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 3.1e-19 98.2 66 63.6
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 5.3e-19 97.4 64 71.9
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 6.9e-19 97.1 74 62.2
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 3.5e-15 84.7 82 56.1
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 7.9e-15 83.6 45 84.4
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.1e-13 79.7 54 74.1
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 2.5e-13 78.6 64 62.5
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 3.3e-13 78.2 77 54.5
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.3e-13 77.8 52 69.2
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.6e-12 75.9 58 63.8
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 1.6e-12 75.9 43 83.7
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 1.6e-12 75.9 51 66.7
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.1e-11 73.2 69 55.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.0e-10 68.9 56 55.4
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.6e-10 68.6 75 52.0
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.0e-09 66.6 69 55.1
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.0e-09 66.6 69 55.1
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.3e-09 66.2 66 51.5


User provided reference genes

Program Settings