Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0174400 Salix brachista HOM05D003404 ORTHO05D004052 1.4e-113 412.9 209 100.0
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 2.7e-104 382.1 201 95.0
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.0e-103 380.2 201 94.0
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 1.0e-103 380.2 201 94.0
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 3.0e-103 378.6 201 93.5
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 3.9e-103 378.3 201 93.5
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.9e-103 378.3 201 94.0
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 3.9e-103 378.3 201 93.0
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 5.2e-103 377.9 201 94.5
Cpa.g.sc173.13 Carica papaya HOM05D003404 ORTHO05D004052 8.8e-103 377.1 201 93.0
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 8.8e-103 377.1 201 93.5
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 8.8e-103 377.1 201 93.0
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 2.0e-102 375.9 201 93.0
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 2.0e-102 375.9 201 93.0
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 2.6e-102 375.6 201 93.0
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 2.6e-102 375.6 201 93.0
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.6e-102 375.6 201 92.5
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 3.3e-102 375.2 201 93.5
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 4.4e-102 374.8 201 93.5
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 5.7e-102 374.4 201 93.0
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 7.4e-102 374.0 201 92.5
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 7.4e-102 374.0 201 92.5
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 1.3e-101 373.2 201 92.5
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 2.8e-101 372.1 201 92.5
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 3.7e-101 371.7 201 92.5
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 8.2e-101 370.5 201 92.0
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 8.2e-101 370.5 201 92.5
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 8.2e-101 370.5 201 92.5
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 8.2e-101 370.5 201 92.5
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 1.4e-100 369.8 201 91.5
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 1.4e-100 369.8 201 92.0
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 1.8e-100 369.4 201 91.5
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 3.1e-100 368.6 201 91.0
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 4.1e-100 368.2 201 91.5
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 5.3e-100 367.9 201 91.5
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 5.3e-100 367.9 201 91.0
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 9.1e-100 367.1 201 91.0
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.2e-99 366.7 201 90.5
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 1.2e-99 366.7 201 91.0
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 1.2e-99 366.7 201 91.5
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 1.2e-99 366.7 201 91.5
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 2.0e-99 365.9 201 91.0
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 2.0e-99 365.9 201 91.0
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 2.0e-99 365.9 201 91.0
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 4.5e-99 364.8 201 90.0
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 5.9e-99 364.4 201 91.0
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 5.9e-99 364.4 201 90.5
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.0e-98 363.6 201 90.5
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.7e-98 362.8 201 90.5
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 1.7e-98 362.8 201 90.0
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 3.8e-98 361.7 201 89.6
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 3.8e-98 361.7 201 89.1
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 8.5e-98 360.5 201 89.6
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.5e-97 359.8 201 89.6
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 1.9e-97 359.4 201 90.5
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.9e-97 359.4 201 89.1
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 2.5e-97 359.0 201 88.6
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 3.2e-97 358.6 201 89.1
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 9.4e-97 357.1 201 88.1
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 9.4e-97 357.1 201 89.1
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 1.2e-96 356.7 202 87.6
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 2.1e-96 355.9 201 89.1
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 2.7e-96 355.5 201 88.6
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 3.6e-96 355.1 201 89.1
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 8.0e-96 354.0 201 88.6
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 1.0e-95 353.6 201 88.1
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 1.4e-95 353.2 201 88.1
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.4e-95 353.2 201 88.1
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 5.2e-95 351.3 187 93.6
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 2.0e-94 349.4 201 87.6
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 3.3e-94 348.6 201 87.1
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 2.8e-93 345.5 201 86.1
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 6.3e-93 344.4 201 86.6
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 3.1e-92 342.0 201 86.6
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 3.1e-92 342.0 201 85.1
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 7.0e-92 340.9 201 87.1
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 7.0e-92 340.9 201 87.1
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 1.6e-91 339.7 201 86.1
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 5.9e-91 337.8 201 83.6
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 1.7e-90 336.3 201 84.6
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 6.5e-90 334.3 201 83.1
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.9e-89 332.8 201 85.6
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 2.1e-88 329.3 240 74.2
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 3.6e-88 328.6 207 81.2
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 4.7e-88 328.2 207 81.6
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 6.1e-88 327.8 207 81.2
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.6
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.2
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.6
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.2
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.6
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.2
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.2
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 8.0e-88 327.4 207 81.2
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 2.3e-87 325.9 207 80.7
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 2.3e-87 325.9 207 81.2
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 3.0e-87 325.5 168 96.4
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 5.2e-87 324.7 207 80.2
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 6.8e-87 324.3 201 82.6
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 6.8e-87 324.3 207 81.2
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 1.2e-86 323.6 168 95.2
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.7e-85 319.7 200 81.0
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 2.8e-85 318.9 207 78.7
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 6.3e-85 317.8 168 94.0
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 1.8e-84 316.2 207 78.7
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 3.1e-84 315.5 201 80.1
HPP92_028449 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.9e-81 306.2 203 77.8
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 5.7e-78 294.7 200 75.5
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 1.3e-77 293.5 200 74.5
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.4e-76 290.0 200 75.5
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 7.0e-76 287.7 200 74.0
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 1.2e-75 287.0 201 75.6
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 2.0e-75 286.2 206 71.4
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 6.1e-72 274.6 210 66.2
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.4e-60 236.9 129 89.1
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 1.2e-56 223.8 209 56.0
QL09p011372 Quercus lobata HOM05D003404 ORTHO05D004052 3.2e-52 209.1 128 82.0
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 1.7e-50 203.4 169 67.5
arahy.Tifrunner.gnm1.ann1.GG9Z8N Arachis hypogaea HOM05D003404 ORTHO05D004052 1.1e-47 194.1 143 70.6
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 1.4e-47 193.7 199 48.7
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 1.3e-45 187.2 112 83.9
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 1.6e-43 180.3 201 48.3
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 1.4e-39 167.2 211 46.4
Lsat_1_v5_gn_8_147900 Lactuca sativa HOM05D003404 ORTHO05D004052 2.0e-38 163.3 110 74.5
Thecc.06G018800 Theobroma cacao HOM05D003404 ORTHO05D004052 3.5e-35 152.5 80 91.2
HPP92_001465 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.7e-34 150.2 107 72.0
Lsat_1_v5_gn_7_61421 Lactuca sativa HOM05D003404 ORTHO05D004052 5.3e-31 138.7 79 86.1
Actinidia01636 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.4e-28 130.6 201 44.3
Lsat_1_v5_gn_2_40780 Lactuca sativa HOM05D003404 ORTHO05D004052 1.9e-28 130.2 79 77.2
CSS0022364 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D000001 1.6e-27 127.1 105 69.5
HPP92_027407 Vanilla planifolia HOM05D003404 ORTHO05D036552 4.5e-22 109.0 60 81.7
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 7.4e-17 91.7 170 34.7
PSO357G0006 Papaver somniferum HOM05D003404 ORTHO05D004052 4.5e-14 82.4 62 69.4
HPP92_027749 Vanilla planifolia HOM05D028814 ORTHO05D020285 9.3e-12 74.7 88 47.7
arahy.Tifrunner.gnm1.ann1.I4H71T Arachis hypogaea HOM05D003404 ORTHO05D004052 2.1e-11 73.6 39 87.2
MBI07_g25511_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D036552 2.5e-09 66.6 33 93.9
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 2.5e-09 66.6 38 84.2
AagrBONN_evm.TU.Sc2ySwM_117.1502 Anthoceros agrestis HOM05D003404 ORTHO05D016498 3.7e-08 62.8 47 68.1
HPP92_010313 Vanilla planifolia HOM05D003404 ORTHO05D020285 8.2e-08 61.6 42 76.2


User provided reference genes

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