Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 2400.2 1323 100.0
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 2046.2 1351 87.0
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1616.3 1488 68.1
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1527.7 1321 71.1
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1424.5 1371 64.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1308.1 1399 59.1
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1292.3 1403 60.7
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1278.1 1388 60.0
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1271.1 1390 60.1
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1259.6 1366 57.2
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1256.1 1365 58.8
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1249.2 1393 59.2
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1246.9 1397 58.1
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1225.3 1369 57.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1219.1 1447 56.5
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1217.6 1386 57.7
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1216.1 1367 57.8
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1211.8 1374 56.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1190.3 1302 58.5
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1189.1 1378 56.7
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1188.7 1389 56.7
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1187.9 1383 56.5
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1186.0 1393 58.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1161.7 1362 57.6
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1157.1 1369 56.0
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1154.8 1383 55.7
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1152.5 1370 55.9
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1151.0 1353 55.1
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1150.6 1384 56.4
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1147.9 1395 56.5
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1143.6 1354 55.5
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1142.5 1350 56.1
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1139.8 1381 55.7
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1135.9 1388 55.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1129.8 1455 53.3
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1127.5 1406 55.1
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1125.5 1389 56.5
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1125.5 1406 56.1
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1119.4 1422 54.6
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1106.7 1366 54.2
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1104.4 1391 53.1
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1104.0 1360 54.6
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1103.6 1389 53.1
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1101.3 1370 54.3
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1100.5 1366 54.5
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1098.6 1388 53.3
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1096.6 1364 53.6
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1092.8 1372 54.0
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1083.9 1356 54.4
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 9.1e-312 1074.7 1368 53.1
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 2.7e-311 1072.4 1364 52.3
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 6.3e-311 1071.2 1363 52.9
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.4e-309 1065.1 1372 53.7
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 1.1e-307 1060.4 1380 55.1
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.1e-304 1050.4 1384 52.2
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 6.2e-303 1044.6 1375 51.2
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 3.4e-301 1038.9 1226 58.8
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 5.4e-299 1031.6 1408 53.0
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 1.7e-297 1026.5 1371 51.6
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 2.3e-297 1026.2 1360 51.4
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 1.9e-296 1023.1 1399 51.5
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.0e-293 1013.1 1215 53.3
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 6.0e-290 1001.5 1358 51.3
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.3e-289 999.6 1370 50.5
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 8.1e-287 991.1 1037 55.4
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.4e-286 990.3 1357 50.9
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 5.3e-286 988.4 1371 48.0
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 3.5e-282 975.7 1221 55.3
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 7.9e-282 974.5 1227 51.5
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 7.4e-280 968.0 1362 50.0
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 3.7e-279 965.7 1412 52.8
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 4.3e-272 942.2 1159 52.6
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 2.8e-271 939.5 1427 46.0
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 8.5e-268 927.9 1386 47.1
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.1e-267 927.5 1389 49.2
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 2.5e-267 926.4 1405 46.5
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.6e-266 923.7 1385 48.9
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.6e-266 923.7 1392 46.7
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.0e-265 921.0 1189 48.5
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 3.0e-265 919.5 1406 45.7
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 3.3e-264 916.0 1408 47.5
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.4e-262 909.8 1503 46.5
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.8e-260 902.5 1213 48.1
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 6.5e-260 901.7 1486 46.4
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 7.4e-256 888.3 1414 45.2
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 3.7e-255 885.9 1240 48.5
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.2e-253 880.9 1414 45.0
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 4.5e-253 879.0 948 53.9
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 3.2e-251 872.8 1195 49.0
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 3.2e-251 872.8 901 54.7
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.6e-250 870.5 1371 44.8
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 3.3e-248 862.8 928 54.4
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 2.2e-247 860.1 1381 45.5
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 2.2e-247 860.1 1381 45.5
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 1.2e-245 854.4 1384 45.3
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 3.8e-244 849.4 1391 45.2
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 3.8e-244 849.4 1360 43.4
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 4.7e-242 842.4 1385 45.2
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 2.3e-241 840.1 1372 47.9
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 3.5e-237 826.2 1082 54.8
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 2.2e-236 823.5 1391 46.7
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 5.0e-236 822.4 785 60.5
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-233 814.3 1299 44.8
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 3.0e-233 813.1 1427 41.0
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 6.3e-231 805.4 1351 48.0
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 1.7e-220 770.8 1393 42.2
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.2e-213 748.0 1357 47.5
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.0e-212 743.4 1361 40.2
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.1e-209 734.9 1350 45.0
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 6.0e-205 719.2 1374 43.4
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.1e-201 708.4 1032 46.4
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.4e-201 708.0 927 49.3
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.1e-198 698.4 1137 43.2
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.3e-191 674.9 1017 47.9
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.2e-189 668.3 1372 41.9
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 7.8e-189 665.6 1026 44.6
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 4.9e-175 619.8 1201 38.8
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.1e-169 602.1 791 47.8
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.0e-167 595.5 537 62.8
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.1e-161 575.5 1343 40.7
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.1e-161 573.5 1283 38.0
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 5.0e-151 540.0 1233 40.5
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.6e-149 535.0 1257 37.3
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.5e-136 490.3 1377 34.6
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.6e-133 481.9 903 48.7
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 2.8e-109 401.4 317 65.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.8e-108 398.7 415 51.8
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 3.4e-107 394.4 1381 32.1
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.7e-103 382.1 1404 33.1
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 9.8e-99 366.3 1245 31.4
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.9e-97 362.1 1191 32.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 2.1e-85 322.0 338 51.5
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 2.8e-85 321.6 537 39.3
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 6.8e-84 317.0 1304 32.1
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 8.9e-76 290.0 442 45.9
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 2.3e-71 275.4 1003 29.5
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 2.6e-67 261.9 945 28.8
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.5e-67 261.2 1002 27.5
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 9.3e-65 253.4 206 65.0
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 1.8e-63 249.2 892 29.7
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.8e-61 241.1 1105 28.1
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 1.8e-55 222.6 211 60.7
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 8.7e-55 220.3 910 28.6
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 3.3e-54 218.4 327 42.2
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 3.3e-54 218.4 581 45.8
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 6.2e-53 214.2 1026 27.6
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 3.1e-52 211.8 909 26.4
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 1.2e-51 209.9 377 43.8
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 4.5e-51 208.0 247 46.2
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 6.0e-48 197.6 919 28.2
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 2.5e-46 192.2 233 49.4
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.1e-45 189.1 1024 26.2
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 4.8e-45 188.0 260 44.6
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 4.5e-43 181.4 1070 25.7
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.0e-42 180.3 194 50.5
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 2.9e-42 178.7 771 27.8
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 3.8e-42 178.3 1349 24.1
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.0e-39 170.2 1346 25.3
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 5.1e-39 167.9 698 26.8
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.8e-37 162.2 661 27.1
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 1.7e-29 136.3 207 57.5
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 4.8e-29 134.8 287 31.7
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.3e-29 134.4 377 36.9
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 6.3e-29 134.4 114 59.6
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.2e-27 130.2 147 47.6
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 2.6e-27 129.0 142 50.0
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 3.9e-23 115.2 218 45.4
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 2.0e-22 112.8 127 54.3
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 2.6e-22 112.5 161 34.8
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 7.4e-22 110.9 831 24.9
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.3e-18 100.1 88 54.5
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 1.1e-17 97.1 90 55.6
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 1.8e-12 79.7 444 26.8
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 2.4e-12 79.3 93 44.1
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 7.0e-12 77.8 264 29.9
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 5.5e-09 68.2 69 53.6
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 5.5e-09 68.2 256 33.6
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.7e-08 65.9 135 32.6
SHI29645 Sapria himalayana HOM05D001849 ORTHO05D000062 4.7e-08 65.1 97 43.3
BcaC02g11963 Brassica carinata HOM05D001675 ORTHO05D021664 2.3e-07 62.8 74 48.6
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 8.8e-07 60.8 52 51.9
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 3.4e-06 58.9 60 53.3


User provided reference genes

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