Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 3979.9 2009 100.0
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 3928.3 2029 98.6
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 0.0e+00 1737.2 2247 45.7
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1704.5 2149 46.3
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1667.5 2191 45.2
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1638.2 2140 45.1
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1563.5 2164 43.5
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1538.5 2121 43.7
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 0.0e+00 1496.1 2155 42.2
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1351.3 2120 40.6
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1236.9 2133 37.6
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1221.1 2101 38.6
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1220.3 2092 37.4
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1218.8 2096 37.5
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1218.0 2087 37.9
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1216.1 2101 37.3
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1214.5 2123 37.5
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1205.3 2115 37.4
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1204.1 2101 37.0
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1204.1 2107 37.9
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1204.1 2078 37.0
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1201.4 2102 37.8
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1200.3 2053 38.4
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1196.0 2083 37.8
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1193.7 2116 37.4
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1189.9 2106 37.1
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1189.5 2121 37.9
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1185.2 2108 37.8
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1184.9 2081 37.7
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1183.7 2093 37.9
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1183.3 2079 37.7
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1181.4 2087 37.6
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1181.0 2117 37.2
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1180.6 2092 36.8
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1180.2 2090 37.3
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1179.9 2024 38.0
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1178.7 2088 37.6
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1176.4 2097 37.4
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1176.0 2100 37.3
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1176.0 2105 37.1
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1174.8 2107 37.0
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1174.5 2089 37.1
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1173.3 2121 37.5
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1171.0 2130 36.8
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1170.2 2066 37.6
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1168.7 2113 36.6
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1166.4 2104 37.5
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1166.4 2127 36.2
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1166.4 2086 36.8
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1165.6 2099 37.4
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1160.2 2089 36.8
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1159.8 2110 36.9
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1157.1 2128 37.7
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1156.7 2122 36.9
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1156.0 2127 37.6
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1155.6 2109 36.9
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1152.1 2104 37.0
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1149.4 2099 35.6
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1146.7 2099 36.6
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1142.5 2093 37.3
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1142.5 2106 37.4
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1140.2 2090 36.6
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1140.2 2055 37.5
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1139.4 2104 36.0
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1139.0 2111 36.7
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1138.3 2111 36.9
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2107 36.0
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2094 36.9
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2112 37.2
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1134.4 2084 36.5
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1133.6 2059 36.5
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1131.3 2100 35.6
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1130.5 2103 35.9
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1130.2 2088 36.1
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1129.4 2075 37.1
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1124.0 2075 36.8
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1123.2 2076 36.9
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1122.8 2085 37.5
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1120.1 2098 35.9
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1114.8 2086 36.1
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1112.8 2114 35.8
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1111.7 2090 36.2
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1109.0 2107 35.9
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1107.0 2112 36.4
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 0.0e+00 1103.2 2065 36.5
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1096.3 2256 35.4
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1090.1 2075 36.8
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1089.3 2093 34.7
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1089.3 2093 35.7
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1088.9 2121 35.7
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1085.9 2066 35.6
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 0.0e+00 1082.0 2077 36.7
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1081.6 2108 36.1
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1081.2 2100 35.0
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1081.2 2107 35.9
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 0.0e+00 1079.3 2072 36.5
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 0.0e+00 1078.9 2072 36.5
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1077.8 2113 35.2
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1076.2 2113 35.1
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1076.2 2204 34.9
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 1.4e-311 1074.7 2074 35.8
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 1.4e-311 1073.9 2064 35.0
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 2.7e-311 1072.8 2054 36.3
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 6.9e-311 1071.6 2074 35.9
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 9.6e-311 1071.2 2072 35.7
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 9.6e-311 1071.2 2141 34.6
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 1.2e-310 1070.8 2058 36.2
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 2.1e-310 1070.1 2070 36.1
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 1.4e-309 1067.4 2087 35.9
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 4.5e-305 1052.4 2077 35.5
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 1.7e-304 1050.4 2053 36.3
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 5.0e-304 1048.9 2053 36.3
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 8.5e-304 1048.1 2119 35.4
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 1.0e-301 1041.2 2058 35.5
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 2.3e-301 1040.0 2058 35.6
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.2e-300 1037.7 2058 35.5
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 3.5e-297 1026.2 2030 35.6
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 1.1e-287 994.6 2579 30.9
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 1.6e-270 937.6 2081 33.7
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 5.2e-253 879.4 2093 31.8
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 1.5e-236 824.7 1290 39.3
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 6.0e-233 812.8 1423 38.4
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.1e-231 808.5 1669 35.0
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 1.3e-224 785.0 1248 38.6
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.1e-213 746.9 2081 29.9
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 2.4e-205 721.1 1247 38.8
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 7.7e-204 716.1 1335 36.7
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 1.6e-201 708.4 1246 38.4
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 6.1e-193 679.9 1651 32.9
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 2.6e-191 674.5 1643 32.3
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.0e-188 664.8 1263 36.9
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 6.3e-182 643.3 1719 32.5
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.4e-173 614.8 1256 35.1
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 1.0e-163 582.8 1213 35.0
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 1.5e-151 542.3 838 38.7
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 4.1e-149 534.3 1341 32.2
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.9e-142 511.5 859 37.5
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.7e-140 505.0 840 36.8
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 3.5e-140 504.6 832 38.1
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 1.1e-138 499.6 1938 27.0
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 1.3e-134 486.1 1006 36.3
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 2.9e-118 431.8 2201 25.4
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 6.4e-118 430.6 819 35.5
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 1.2e-111 409.8 830 34.1
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 8.7e-107 393.7 884 34.8
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 3.1e-96 358.6 1216 28.9
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 7.9e-92 344.0 1789 24.7
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 2.2e-86 325.9 735 32.1
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 4.2e-85 321.6 375 47.2
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 7.4e-82 310.8 514 38.9
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 2.0e-79 302.8 304 49.7
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 2.6e-79 302.4 371 43.4
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 5.5e-77 294.7 2052 22.8
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 1.9e-69 269.6 283 50.5
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 7.5e-66 257.7 314 44.3
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 4.5e-63 248.4 234 50.4
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 4.7e-60 238.4 358 40.8
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 2.3e-59 236.1 2038 22.5
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.3e-54 220.3 2051 22.5
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-53 217.2 2077 22.1
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 3.3e-53 215.7 2055 21.2
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 2.4e-48 199.5 226 45.6
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 5.6e-45 188.3 1997 21.7
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 2.3e-43 183.0 307 35.8
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 1.9e-37 163.3 443 28.9
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 2.8e-36 159.5 190 40.5
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 4.4e-26 125.6 150 46.0
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 4.4e-26 125.6 137 43.1
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 4.4e-26 125.6 443 29.1
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 9.9e-26 124.4 395 28.6
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 9.6e-21 107.8 163 36.2
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 1.2e-18 100.9 147 38.1
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 1.2e-18 100.9 80 63.8
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 5.4e-16 92.0 120 41.7
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.1e-15 90.1 76 52.6
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 7.8e-15 88.2 145 33.1
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 1.3e-14 87.4 254 30.7
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 8.1e-12 78.2 547 23.2
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 5.3e-11 75.5 106 40.6
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 5.8e-10 72.0 50 60.0
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 7.9e-07 61.6 39 74.4


User provided reference genes

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