Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.7e-157 558.1 276 100.0
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.7e-141 505.0 253 98.0
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 8.5e-138 493.8 253 96.4
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.2e-94 350.5 237 70.0
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.6e-91 338.6 252 64.3
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 3.0e-90 335.9 238 65.1
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.5e-89 332.8 239 63.2
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.1e-88 329.7 239 62.8
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 2.4e-87 326.2 245 61.2
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 4.0e-87 325.5 240 62.5
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 6.8e-87 324.7 240 62.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 8.9e-87 324.3 243 62.6
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.2e-86 323.9 249 59.8
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 3.4e-86 322.4 244 61.9
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.7e-85 320.1 248 62.1
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 4.9e-85 318.5 242 62.0
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.1e-84 317.4 238 61.8
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.4e-84 317.0 241 61.4
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.9e-84 316.6 241 61.0
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.9e-84 316.6 241 61.0
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.2e-83 313.9 248 58.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.2e-83 313.9 249 59.0
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 3.5e-83 312.4 242 59.5
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 2.3e-82 309.7 243 60.1
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 3.0e-82 309.3 250 56.0
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.0e-82 309.3 254 57.9
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 3.0e-82 309.3 254 57.9
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 3.0e-82 309.3 240 59.2
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 3.0e-82 309.3 253 57.7
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.9e-82 308.9 254 57.9
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 3.9e-82 308.9 240 61.2
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 3.9e-82 308.9 248 56.0
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 6.6e-82 308.1 240 60.8
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 8.7e-82 307.8 240 58.3
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 8.7e-82 307.8 241 58.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.1e-81 307.4 253 58.5
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 1.9e-81 306.6 238 61.3
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.9e-81 306.6 250 58.8
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 5.6e-81 305.1 250 57.2
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 9.6e-81 304.3 241 60.6
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 9.6e-81 304.3 245 59.6
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.6e-80 303.5 240 60.8
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.6e-80 303.5 241 61.0
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.6e-80 303.5 243 60.9
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.1e-80 303.1 248 55.2
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.8e-80 302.8 240 61.2
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 3.6e-80 302.4 248 54.8
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 3.6e-80 302.4 244 56.1
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 4.7e-80 302.0 250 57.2
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 4.7e-80 302.0 252 55.2
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 4.7e-80 302.0 248 60.1
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 8.1e-80 301.2 259 55.6
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.1e-79 300.8 250 57.2
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 1.4e-79 300.4 241 60.2
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 1.4e-79 300.4 241 58.9
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 3.1e-79 299.3 241 58.5
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 3.1e-79 299.3 241 59.8
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 3.1e-79 299.3 241 57.7
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 4.0e-79 298.9 240 60.4
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 4.0e-79 298.9 248 56.0
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 5.2e-79 298.5 252 55.6
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 6.9e-79 298.1 240 58.8
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.2e-78 297.4 243 58.0
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.2e-78 297.4 238 59.7
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 2.0e-78 296.6 241 58.9
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 2.0e-78 296.6 241 58.5
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.0e-78 296.6 242 58.7
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 2.6e-78 296.2 243 59.3
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 4.4e-78 295.4 238 59.2
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 7.6e-78 294.7 241 59.8
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 9.9e-78 294.3 243 59.7
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 9.9e-78 294.3 257 54.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 9.9e-78 294.3 272 52.6
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 9.9e-78 294.3 246 57.7
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 1.3e-77 293.9 257 56.4
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.7e-77 293.5 252 56.7
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 2.9e-77 292.7 243 58.4
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 2.9e-77 292.7 243 58.4
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 2.9e-77 292.7 243 58.4
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 3.8e-77 292.4 257 56.4
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 6.4e-77 291.6 200 65.5
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.1e-76 290.8 257 55.3
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.1e-76 290.8 236 58.1
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.1e-76 290.8 236 58.1
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.1e-76 290.8 236 58.1
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.9e-76 290.0 240 57.5
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 1.9e-76 290.0 255 56.5
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.2e-76 289.3 249 56.6
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 7.1e-76 288.1 201 63.7
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 9.3e-76 287.7 252 55.6
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.6e-75 287.0 279 50.2
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 3.5e-75 285.8 220 60.0
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 4.6e-75 285.4 257 54.5
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 6.0e-75 285.0 242 56.6
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 7.8e-75 284.6 255 54.9
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.0e-74 284.3 255 54.1
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.0e-74 284.3 257 54.5
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.5e-73 280.4 220 61.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 5.6e-73 278.5 265 52.1
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 1.3e-72 277.3 226 58.0
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.3e-72 277.3 197 63.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.1e-72 276.6 202 63.9
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 4.8e-72 275.4 228 58.3
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 8.1e-72 274.6 296 49.0
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 9.0e-71 271.2 218 60.6
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.5e-70 270.4 249 53.4
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 2.7e-67 259.6 229 54.6
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 3.5e-67 259.2 228 55.7
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 4.6e-67 258.8 239 50.6
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 8.7e-66 254.6 212 55.7
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 6.9e-63 245.0 246 51.2
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 9.3e-60 234.6 195 58.5
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 8.7e-58 228.0 268 45.1
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.7e-56 222.6 267 46.4
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 6.5e-53 211.8 240 46.2
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 8.4e-53 211.5 183 54.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 9.3e-52 208.0 173 56.6
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 1.0e-50 204.5 167 57.5
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.7e-50 201.8 191 53.4
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 6.7e-50 201.8 160 55.6
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 2.6e-46 189.9 163 53.4
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.1e-41 174.5 191 50.3
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.4e-36 157.5 175 47.4
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.2e-35 154.5 108 61.1
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 3.9e-34 149.4 100 67.0
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.9e-30 135.6 176 41.5
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.5e-29 132.1 176 40.3
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.5e-28 130.2 177 40.1
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.1e-27 127.1 202 39.1
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.1e-27 127.1 176 39.2
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.8e-26 124.0 79 70.9
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 2.8e-24 116.7 141 45.4
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.0e-22 110.5 152 40.1
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 4.5e-22 109.4 95 57.9
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 7.7e-22 108.6 176 35.2
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 9.4e-20 101.7 137 44.5
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 4.7e-19 99.4 71 62.0
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-18 97.8 117 40.2
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.0e-18 96.3 176 31.2
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 2.6e-17 93.6 164 36.6
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 5.7e-17 92.4 70 62.9
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-16 90.9 112 37.5
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 3.7e-16 89.7 194 27.8
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.3e-16 89.0 176 29.0
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-13 81.6 176 30.1
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.3e-10 70.5 109 34.9
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 4.0e-10 69.7 67 46.3


User provided reference genes

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