Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 4.0e-240 834.3 412 100.0
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 3.2e-181 638.6 375 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 2.7e-180 635.6 401 74.1
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 7.9e-180 634.0 383 79.6
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 6.7e-179 630.9 380 78.9
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.3e-178 628.2 400 75.2
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 5.6e-178 627.9 397 76.8
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 5.6e-178 627.9 379 79.4
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 1.6e-177 626.3 404 75.7
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 2.1e-177 625.9 379 79.2
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.1e-177 625.9 404 75.5
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 2.8e-177 625.5 392 77.3
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 2.8e-177 625.5 379 79.4
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.7e-177 625.2 379 79.2
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 3.7e-177 625.2 379 79.2
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 4.8e-177 624.8 391 75.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 8.1e-177 624.0 394 74.9
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 8.1e-177 624.0 397 76.3
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 8.1e-177 624.0 397 76.3
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 1.1e-176 623.6 391 75.4
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 1.1e-176 623.6 389 76.9
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.1e-176 623.6 379 79.2
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.4e-176 623.2 392 77.3
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 1.4e-176 623.2 409 73.6
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 1.4e-176 623.2 378 78.8
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 1.8e-176 622.9 388 77.1
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.8e-176 622.9 399 76.7
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 2.4e-176 622.5 385 76.9
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 2.4e-176 622.5 379 78.6
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.1e-176 622.1 397 76.3
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 3.1e-176 622.1 401 75.8
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 4.0e-176 621.7 388 77.1
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 4.0e-176 621.7 379 78.4
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 4.0e-176 621.7 388 77.3
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 5.3e-176 621.3 391 75.2
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 5.3e-176 621.3 393 77.4
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 5.3e-176 621.3 392 76.3
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 5.3e-176 621.3 409 74.6
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.2e-175 620.2 385 76.6
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 1.2e-175 620.2 379 77.6
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 1.5e-175 619.8 388 77.1
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 2.0e-175 619.4 392 75.8
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 2.0e-175 619.4 392 75.5
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 2.6e-175 619.0 393 76.3
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 2.6e-175 619.0 392 75.8
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 2.6e-175 619.0 397 74.6
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 3.4e-175 618.6 396 74.7
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 3.4e-175 618.6 380 78.4
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 4.5e-175 618.2 379 77.8
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 4.5e-175 618.2 379 77.3
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 4.5e-175 618.2 388 76.0
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 4.5e-175 618.2 395 75.2
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 5.8e-175 617.8 392 75.5
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 5.8e-175 617.8 379 77.8
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 7.6e-175 617.5 379 77.8
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 7.6e-175 617.5 387 76.7
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.0e-174 617.1 379 76.5
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 1.0e-174 617.1 385 76.9
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 1.0e-174 617.1 392 75.3
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 1.3e-174 616.7 375 78.9
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.3e-174 616.7 385 76.6
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.3e-174 616.7 392 75.0
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 1.7e-174 616.3 379 77.8
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 1.7e-174 616.3 388 76.8
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 2.2e-174 615.9 398 75.4
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 2.2e-174 615.9 387 76.5
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 2.9e-174 615.5 391 74.7
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 2.9e-174 615.5 392 75.3
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 4.9e-174 614.8 392 74.7
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 6.5e-174 614.4 394 74.6
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 6.5e-174 614.4 388 75.8
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 8.4e-174 614.0 379 77.8
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 8.4e-174 614.0 385 75.6
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 8.4e-174 614.0 375 77.6
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 8.4e-174 614.0 379 77.0
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 1.1e-173 613.6 383 77.0
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 1.1e-173 613.6 415 72.5
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.4e-173 613.2 411 72.0
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.4e-173 613.2 396 74.0
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 1.9e-173 612.8 401 73.8
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 1.9e-173 612.8 383 76.5
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 1.9e-173 612.8 404 74.3
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 3.2e-173 612.1 394 74.1
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 4.2e-173 611.7 378 77.2
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 4.2e-173 611.7 379 77.3
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 4.2e-173 611.7 388 76.0
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 5.5e-173 611.3 407 73.7
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 7.1e-173 610.9 379 76.8
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 7.1e-173 610.9 379 76.8
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 9.3e-173 610.5 381 77.2
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 1.2e-172 610.1 381 77.4
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 1.6e-172 609.8 379 76.5
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.6e-172 609.8 379 76.5
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 2.1e-172 609.4 383 75.7
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 4.6e-172 608.2 396 74.2
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 4.6e-172 608.2 404 73.3
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 4.6e-172 608.2 381 74.8
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 6.0e-172 607.8 368 79.3
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 6.0e-172 607.8 387 77.0
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 7.9e-172 607.4 411 72.0
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 7.9e-172 607.4 379 76.3
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 1.0e-171 607.1 392 74.5
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 8.7e-171 604.0 378 77.0
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 1.5e-170 603.2 412 70.6
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 1.3e-169 600.1 368 78.3
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 5.8e-167 591.3 369 76.7
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 7.6e-167 590.9 377 74.5
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.7e-166 589.7 379 75.5
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 1.1e-165 587.0 460 65.0
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 2.3e-163 579.3 367 75.7
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 8.2e-161 570.9 380 72.9
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.0e-159 566.2 379 73.4
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 2.6e-159 565.8 379 73.4
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 3.2e-157 558.9 382 68.8
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 1.5e-154 550.1 366 71.0
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 5.3e-152 541.6 336 76.8
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 6.5e-150 534.6 345 75.1
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 1.6e-148 530.0 384 66.4
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 2.0e-143 513.1 379 67.0
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 4.2e-141 505.4 338 69.5
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.1e-133 480.7 340 69.1
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.9e-133 479.9 311 75.9
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 2.8e-129 466.1 288 76.4
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 1.0e-115 421.0 299 69.6
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 2.3e-115 419.9 396 55.8
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 1.1e-96 357.8 267 67.8
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 1.1e-91 341.3 277 63.5
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.7e-71 273.5 332 42.5
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 2.7e-71 273.5 332 42.5
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 9.6e-53 211.8 136 73.5
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 7.9e-47 192.2 118 78.0
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 1.1e-37 161.8 120 62.5
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 1.1e-27 128.6 84 71.4
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 5.9e-26 122.9 84 70.2
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 5.0e-25 119.8 84 67.9
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 4.2e-24 116.7 125 52.8
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 2.0e-21 107.8 57 84.2
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.7e-17 94.7 79 59.5
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.7e-17 94.7 220 31.4
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 1.7e-17 94.7 50 82.0
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 1.7e-12 78.2 46 78.3
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.6e-07 61.6 33 78.8
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 2.7e-07 60.8 154 29.2
BcaB04g18967 Brassica carinata HOM05D002170 ORTHO05D023792 6.8e-06 56.2 66 47.0


User provided reference genes

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