Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 3.0e-201 704.9 341 100.0
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 9.6e-123 444.1 342 63.5
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 8.1e-122 441.0 341 63.0
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 4.4e-120 435.3 342 61.7
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 4.4e-120 435.3 342 62.9
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 5.8e-120 434.9 340 61.5
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 7.6e-120 434.5 342 62.6
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 7.6e-120 434.5 346 61.3
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 1.7e-119 433.3 346 61.3
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 2.2e-119 433.0 342 63.5
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.9e-119 432.6 342 62.9
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 3.8e-119 432.2 342 63.2
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 6.4e-119 431.4 346 61.6
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 8.4e-119 431.0 346 62.1
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 1.4e-118 430.3 343 61.8
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.4e-118 430.3 342 61.1
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.9e-118 429.9 346 60.7
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 1.9e-118 429.9 343 61.5
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 1.9e-118 429.9 346 61.0
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.9e-118 429.9 342 62.9
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.4e-118 429.5 344 60.8
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.4e-118 429.5 341 62.8
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 3.2e-118 429.1 346 61.3
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.2e-118 429.1 346 61.0
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 4.2e-118 428.7 343 61.2
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 7.1e-118 427.9 342 59.9
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 7.1e-118 427.9 342 62.3
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 9.3e-118 427.6 343 61.2
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 9.3e-118 427.6 342 60.2
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 9.3e-118 427.6 342 61.1
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.5e-117 425.6 342 60.8
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 3.5e-117 425.6 343 60.3
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 3.5e-117 425.6 343 60.1
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 3.5e-117 425.6 346 60.7
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 3.5e-117 425.6 341 60.7
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 4.6e-117 425.2 342 61.1
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 4.6e-117 425.2 359 59.1
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 6.0e-117 424.9 342 61.1
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 6.0e-117 424.9 342 60.5
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 7.8e-117 424.5 346 60.1
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.3e-116 423.7 342 60.5
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 1.7e-116 423.3 342 60.5
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 3.9e-116 422.2 342 60.2
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 3.9e-116 422.2 342 59.9
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 3.9e-116 422.2 342 59.6
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 5.1e-116 421.8 342 60.5
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 6.6e-116 421.4 342 59.6
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 8.7e-116 421.0 343 60.1
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.1e-115 420.6 342 60.2
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.1e-115 420.6 346 59.2
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.1e-115 420.6 342 60.8
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.5e-115 420.2 342 60.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 2.5e-115 419.5 342 60.8
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.5e-115 419.5 343 60.9
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 3.3e-115 419.1 346 59.2
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 3.3e-115 419.1 342 59.9
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.3e-115 419.1 342 59.4
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 3.3e-115 419.1 342 59.9
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 3.3e-115 419.1 342 59.4
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 4.3e-115 418.7 342 60.5
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 5.6e-115 418.3 346 59.0
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 5.6e-115 418.3 341 59.5
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 5.6e-115 418.3 371 56.9
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 7.3e-115 417.9 346 59.8
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 9.6e-115 417.5 346 59.0
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.6e-114 416.8 346 59.0
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.6e-114 416.8 346 59.0
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.6e-114 416.8 343 59.2
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.1e-114 416.4 343 59.5
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 3.6e-114 415.6 342 59.4
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 3.6e-114 415.6 345 59.7
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 4.8e-114 415.2 344 59.9
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.1e-113 414.1 343 59.5
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.8e-113 413.3 346 59.0
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.8e-113 413.3 346 59.0
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 5.3e-113 411.8 376 54.0
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 1.2e-112 410.6 343 58.6
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 1.5e-112 410.2 368 55.4
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 1.5e-112 410.2 346 59.0
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.5e-112 410.2 346 59.0
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 2.6e-112 409.5 322 61.8
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 4.2e-110 402.1 342 57.9
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.2e-109 400.6 343 59.2
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 6.0e-109 398.3 325 58.5
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 3.3e-107 392.5 329 59.0
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 4.3e-107 392.1 296 63.2
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 7.4e-107 391.3 340 57.9
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 4.8e-106 388.7 438 48.2
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 1.3e-103 380.6 342 57.3
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 4.9e-103 378.6 287 61.7
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 6.0e-101 371.7 273 65.2
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.5e-99 367.1 340 54.1
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 1.3e-98 364.0 278 61.5
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.7e-98 362.5 296 59.5
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 6.9e-97 358.2 342 54.7
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.4e-96 355.9 315 55.9
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.3e-95 354.0 379 49.1
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 6.5e-95 351.7 296 58.1
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 3.9e-92 342.4 284 59.5
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 6.3e-90 335.1 342 52.3
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 3.1e-89 332.8 257 60.3
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 4.1e-89 332.4 280 57.1
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.1e-86 324.3 341 49.9
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.5e-83 313.9 341 48.7
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.6e-82 310.5 343 49.3
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.4e-78 297.4 247 59.9
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 6.1e-77 292.0 227 59.0
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.5e-75 287.3 336 43.5
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.4e-73 280.8 343 44.0
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 9.7e-67 258.1 209 59.8
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 4.8e-66 255.8 321 41.1
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.1e-61 240.4 278 42.1
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.1e-61 240.4 275 47.6
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.5e-59 234.2 296 43.2
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 8.2e-58 228.4 173 60.7
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.1e-57 226.1 174 60.9
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 7.0e-57 225.3 329 38.9
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.0e-55 221.5 191 60.2
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.1e-54 218.0 189 57.7
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.1e-53 213.8 177 56.5
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 6.1e-53 212.2 150 66.0
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.1e-49 201.4 159 59.1
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.2e-48 198.0 150 60.0
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 2.2e-42 177.2 374 29.9
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.0e-40 170.6 141 54.6
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.3e-38 162.2 367 31.9
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 1.4e-33 147.9 384 29.2
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 1.2e-32 144.8 115 62.6
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.2e-26 124.0 96 59.4
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 9.2e-25 118.6 144 44.4
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 2.0e-24 117.5 83 62.7
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.8e-20 104.4 67 68.7
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 3.5e-16 90.1 70 57.1
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 7.8e-16 89.0 62 61.3
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.3e-15 88.2 68 60.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 6.6e-15 85.9 99 45.5
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 2.5e-14 84.0 67 58.2
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.8e-13 80.5 72 54.2
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 1.4e-12 78.2 179 31.8
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.8e-10 70.1 55 56.4
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.9e-07 60.1 56 48.2


User provided reference genes

Program Settings