Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 7.5e-183 643.7 311 100.0
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.2e-156 556.6 316 89.6
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 4.4e-82 308.9 312 52.2
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 2.4e-72 276.6 318 48.7
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.0e-71 273.5 260 53.8
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 9.8e-66 254.6 320 43.1
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 1.3e-65 254.2 314 42.7
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.1e-64 251.1 314 43.9
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.4e-64 250.8 315 43.2
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.4e-64 250.8 329 41.6
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.8e-64 250.4 311 43.1
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 2.4e-64 250.0 312 43.9
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 3.2e-64 249.6 314 43.6
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 4.1e-64 249.2 314 41.7
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 4.1e-64 249.2 314 41.1
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 4.1e-64 249.2 314 42.0
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 5.4e-64 248.8 312 43.3
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 9.2e-64 248.1 317 41.3
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 9.2e-64 248.1 314 42.4
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 9.2e-64 248.1 314 42.4
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 3.5e-63 246.1 312 42.9
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 3.5e-63 246.1 314 42.4
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 7.8e-63 245.0 315 42.2
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 7.8e-63 245.0 315 42.2
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 7.8e-63 245.0 307 42.7
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 1.3e-62 244.2 314 43.0
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 1.3e-62 244.2 312 42.3
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.7e-62 243.8 311 42.4
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 1.7e-62 243.8 312 41.7
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.7e-62 243.8 312 42.0
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 2.9e-62 243.0 314 40.8
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 2.9e-62 243.0 314 41.1
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 3.9e-62 242.7 312 42.3
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 3.9e-62 242.7 312 42.3
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 3.9e-62 242.7 314 40.8
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 3.9e-62 242.7 314 41.7
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 8.6e-62 241.5 314 41.4
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 8.6e-62 241.5 312 42.3
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.1e-61 241.1 312 42.3
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.1e-61 241.1 312 42.3
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.1e-61 241.1 314 42.4
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.1e-61 241.1 312 42.3
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 1.5e-61 240.7 314 43.0
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.5e-61 240.7 314 42.0
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.5e-61 240.7 325 41.2
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.5e-61 240.7 314 41.1
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 1.9e-61 240.4 312 41.3
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 1.9e-61 240.4 312 41.0
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.9e-61 240.4 311 42.4
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 2.5e-61 240.0 312 42.0
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 2.5e-61 240.0 313 40.9
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 3.3e-61 239.6 314 41.4
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 3.3e-61 239.6 312 42.0
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 3.3e-61 239.6 314 41.1
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 4.3e-61 239.2 314 40.8
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 4.3e-61 239.2 314 40.8
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 4.3e-61 239.2 314 41.4
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 4.3e-61 239.2 313 41.5
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 5.6e-61 238.8 312 42.3
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 7.3e-61 238.4 325 40.9
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 7.3e-61 238.4 312 41.0
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 9.5e-61 238.0 314 41.4
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 9.5e-61 238.0 312 41.0
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 9.5e-61 238.0 311 41.8
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.6e-60 237.3 314 40.8
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 2.1e-60 236.9 315 41.6
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.1e-60 236.9 314 41.7
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 2.1e-60 236.9 319 38.9
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 2.8e-60 236.5 312 40.7
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 2.8e-60 236.5 314 41.4
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 3.6e-60 236.1 313 41.9
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 4.7e-60 235.7 315 41.9
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 6.1e-60 235.3 312 40.4
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 8.0e-60 235.0 312 41.3
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 8.0e-60 235.0 312 40.7
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.0e-59 234.6 314 40.8
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 1.4e-59 234.2 314 41.1
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.4e-59 234.2 314 40.8
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.8e-59 233.8 314 40.8
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 1.8e-59 233.8 336 39.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 2.3e-59 233.4 313 41.5
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 4.0e-59 232.6 311 40.8
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 4.0e-59 232.6 312 40.4
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 2.0e-58 230.3 306 41.2
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 2.6e-58 229.9 306 41.5
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 5.8e-58 228.8 315 39.0
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 7.5e-58 228.4 301 41.9
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.3e-57 227.6 314 39.5
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 4.9e-57 225.7 314 39.5
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 6.4e-57 225.3 329 38.9
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 1.9e-56 223.8 308 39.3
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 1.9e-56 223.8 341 37.0
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.2e-55 221.1 294 42.2
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 8.6e-54 214.9 408 33.8
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 1.1e-53 214.5 313 39.9
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 2.8e-52 209.9 255 42.7
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 3.6e-52 209.5 262 43.1
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 2.3e-51 206.8 353 35.1
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 5.2e-51 205.7 277 39.7
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 6.8e-51 205.3 246 43.9
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 7.5e-50 201.8 270 42.2
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 2.9e-49 199.9 252 40.5
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 4.9e-49 199.1 271 41.7
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 4.6e-47 192.6 313 37.1
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 7.8e-47 191.8 293 37.5
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 6.6e-46 188.7 309 35.9
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.6e-44 184.1 309 36.6
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.1e-43 181.4 309 37.2
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.2e-43 179.1 307 34.9
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 5.8e-42 175.6 238 39.1
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.7e-41 174.1 236 39.4
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 6.4e-41 172.2 235 40.4
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 6.0e-39 165.6 338 32.8
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 3.0e-38 163.3 171 44.4
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 8.9e-35 151.8 264 36.0
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.5e-34 151.0 208 40.9
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 2.1e-31 140.6 360 30.6
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 4.3e-29 132.9 336 28.3
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 3.6e-28 129.8 177 41.8
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 8.1e-28 128.6 183 40.4
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 6.9e-27 125.6 110 52.7
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 1.2e-26 124.8 145 40.7
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 2.0e-26 124.0 145 42.1
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 7.6e-26 122.1 168 42.9
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.3e-25 121.3 126 46.0
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.1e-22 109.4 125 44.0
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 8.1e-20 102.1 137 38.7
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 2.4e-16 90.5 118 44.9
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 3.2e-16 90.1 104 45.2
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 4.0e-11 73.2 48 68.8
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 5.3e-11 72.8 83 42.2
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 2.1e-07 60.8 98 33.7
PRCOL_00003580 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 3.5e-07 60.1 169 28.4


User provided reference genes

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