Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-55 217.2 102 100.0
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.2e-40 167.5 88 88.6
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-39 165.6 88 87.5
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-38 162.5 88 87.5
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-37 159.5 89 89.9
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.2e-34 148.3 88 80.7
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.1e-33 144.1 88 79.5
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-29 132.9 84 77.4
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-26 122.9 81 75.3
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.9e-26 122.5 73 79.5
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.1e-25 119.0 88 68.2
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.2e-24 114.4 67 86.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.0e-19 100.1 100 53.0
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.9e-18 95.9 115 47.0
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.3e-18 94.0 54 85.2
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 6.1e-17 90.9 97 49.5
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-16 89.7 51 82.4
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-16 89.7 51 84.3
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.4e-15 85.1 51 82.4
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.8e-15 84.3 51 80.4
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 7.5e-15 84.0 99 44.4
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 2.2e-14 82.4 97 42.3
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 2.9e-14 82.0 81 49.4
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 6.4e-14 80.9 85 45.9
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 8.3e-14 80.5 86 50.0
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 8.3e-14 80.5 99 41.4
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 8.3e-14 80.5 84 46.4
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.1e-13 80.1 85 47.1
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 1.1e-13 80.1 85 45.9
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.4e-13 79.7 85 48.2
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.4e-13 79.7 85 48.2
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 1.4e-13 79.7 85 51.8
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 1.8e-13 79.3 82 46.3
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.8e-13 79.3 83 45.8
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 2.4e-13 79.0 84 45.2
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.4e-13 79.0 83 47.0
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 2.4e-13 79.0 84 46.4
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 3.2e-13 78.6 85 45.9
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 3.2e-13 78.6 86 43.0
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 4.1e-13 78.2 85 45.9
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 4.1e-13 78.2 91 39.6
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 4.1e-13 78.2 85 44.7
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 4.1e-13 78.2 85 47.1
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 4.1e-13 78.2 82 45.1
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 4.1e-13 78.2 84 46.4
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 5.4e-13 77.8 86 46.5
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 5.4e-13 77.8 86 46.5
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 5.4e-13 77.8 82 46.3
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 7.0e-13 77.4 84 45.2
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 7.0e-13 77.4 85 47.1
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 7.0e-13 77.4 85 44.7
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.0e-13 77.4 85 45.9
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.2e-12 76.6 85 44.7
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.2e-12 76.6 85 44.7
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.2e-12 76.6 86 45.3
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.2e-12 76.6 85 43.5
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 1.6e-12 76.3 84 45.2
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.6e-12 76.3 83 47.0
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.6e-12 76.3 85 42.4
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 2.0e-12 75.9 85 44.7
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 2.7e-12 75.5 85 48.2
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 2.7e-12 75.5 83 44.6
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.7e-12 75.5 83 44.6
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.7e-12 75.5 82 46.3
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 3.5e-12 75.1 86 43.0
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 3.5e-12 75.1 88 43.2
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 4.6e-12 74.7 84 41.7
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 4.6e-12 74.7 85 41.2
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 6.0e-12 74.3 85 47.1
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 6.0e-12 74.3 83 42.2
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 7.8e-12 73.9 87 41.4
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 7.8e-12 73.9 86 44.2
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 7.8e-12 73.9 88 42.0
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 7.8e-12 73.9 84 42.9
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 7.8e-12 73.9 88 39.8
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 7.8e-12 73.9 88 40.9
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 1.0e-11 73.6 86 44.2
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.0e-11 73.6 85 43.5
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.3e-11 73.2 87 40.2
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 1.3e-11 73.2 85 43.5
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.3e-11 73.2 88 44.3
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.7e-11 72.8 87 41.4
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.7e-11 72.8 87 43.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.0e-11 72.0 84 41.7
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.0e-11 72.0 74 44.6
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 3.0e-11 72.0 88 40.9
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 3.9e-11 71.6 84 45.2
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 3.9e-11 71.6 88 43.2
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 6.6e-11 70.9 87 39.1
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 6.6e-11 70.9 84 42.9
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 6.6e-11 70.9 84 42.9
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 6.6e-11 70.9 84 42.9
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 6.6e-11 70.9 88 38.6
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 6.6e-11 70.9 84 42.9
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 8.6e-11 70.5 84 40.5
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 8.6e-11 70.5 84 41.7
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 8.6e-11 70.5 88 40.9
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 8.6e-11 70.5 84 42.9
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.1e-10 70.1 84 42.9
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.1e-10 70.1 85 44.7
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 1.5e-10 69.7 84 41.7
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.9e-10 69.3 84 41.7
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 1.9e-10 69.3 84 41.7
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.9e-10 69.3 84 41.7
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 2.5e-10 68.9 84 40.5
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 2.5e-10 68.9 84 44.0
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 2.5e-10 68.9 84 44.0
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 2.5e-10 68.9 84 42.9
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 2.5e-10 68.9 85 41.2
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 3.3e-10 68.6 85 43.5
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 3.3e-10 68.6 85 43.5
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 3.3e-10 68.6 84 41.7
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 3.3e-10 68.6 84 42.9
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.3e-10 68.6 84 41.7
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 3.3e-10 68.6 89 41.6
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 4.3e-10 68.2 84 40.5
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.3e-10 68.2 84 41.7
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 4.3e-10 68.2 84 40.5
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.3e-10 68.2 84 41.7
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 5.6e-10 67.8 85 43.5
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 7.3e-10 67.4 88 36.4
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 9.5e-10 67.0 84 42.9
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 9.5e-10 67.0 84 40.5
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 9.5e-10 67.0 42 66.7
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 9.5e-10 67.0 84 40.5
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 1.2e-09 66.6 84 39.3
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.2e-09 66.6 108 37.0
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.2e-09 66.6 88 42.0
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-09 66.6 85 41.2
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 2.1e-09 65.9 43 62.8
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.8e-09 65.5 84 40.5
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.8e-09 65.5 85 40.0
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 3.6e-09 65.1 85 41.2
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 4.7e-09 64.7 84 39.3
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 4.7e-09 64.7 84 39.3
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 4.7e-09 64.7 84 39.3
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.7e-09 64.7 84 40.5
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 4.7e-09 64.7 85 41.2
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 6.2e-09 64.3 84 39.3
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 6.2e-09 64.3 84 39.3
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 6.2e-09 64.3 84 38.1
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 6.2e-09 64.3 85 43.5
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 8.0e-09 63.9 83 41.0
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 1.1e-08 63.5 49 53.1
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.1e-08 63.5 84 40.5
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 8.9e-08 60.5 55 50.9
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 8.9e-08 60.5 55 50.9
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.5e-07 59.7 51 47.1
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 7.5e-07 57.4 50 48.0


User provided reference genes

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