Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO337G0040 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.6e-202 709.1 343 100.0
SMO336G0033 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.6e-91 339.7 247 72.9
SMO337G0094 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 3.2e-86 322.8 312 60.6
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.1e-83 314.3 423 51.5
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 1.2e-56 224.6 399 43.1
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 1.3e-55 221.1 420 40.0
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 2.5e-54 216.9 416 38.9
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 3.3e-54 216.5 416 39.7
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 3.3e-54 216.5 415 38.6
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 4.3e-54 216.1 430 36.3
Rhsim08G0216600 Rhododendron simsii HOM05D004669 ORTHO05D005767 5.6e-54 215.7 414 39.9
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 9.5e-54 214.9 420 38.8
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 2.8e-53 213.4 416 38.5
SMO336G0019 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 3.6e-53 213.0 125 89.6
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 6.1e-53 212.2 420 39.8
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 3.1e-52 209.9 419 37.7
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 1.2e-51 208.0 422 38.4
Manes.04G117100 Manihot esculenta HOM05D004669 ORTHO05D005767 2.6e-51 206.8 384 38.8
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 7.5e-51 205.3 425 35.8
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.7e-50 204.1 416 37.0
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 2.2e-50 203.8 419 37.7
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 2.2e-50 203.8 419 37.7
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 1.1e-49 201.4 416 37.0
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 1.1e-49 201.4 416 37.0
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 1.4e-49 201.1 416 37.3
TAR627G0296 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.9e-49 200.7 420 36.2
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.4e-49 200.3 423 37.1
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 9.2e-49 198.4 424 36.6
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.2e-48 198.0 423 36.9
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.2e-48 198.0 419 37.2
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 2.0e-48 197.2 423 36.6
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 6.0e-48 195.7 423 36.6
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 7.8e-48 195.3 423 36.4
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 5.0e-47 192.6 433 35.1
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 5.0e-47 192.6 433 35.1
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 8.6e-47 191.8 419 37.0
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 1.1e-46 191.4 415 35.9
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 1.5e-46 191.0 433 34.9
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 1.5e-46 191.0 420 37.6
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 1.9e-46 190.7 439 34.6
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 1.9e-46 190.7 439 34.6
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 3.3e-46 189.9 433 34.9
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 9.5e-46 188.3 433 34.6
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 9.5e-46 188.3 433 34.6
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 2.1e-45 187.2 433 34.4
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 2.1e-45 187.2 433 34.4
EL10Ac9g21952 Beta vulgaris HOM05D004669 ORTHO05D005767 8.0e-45 185.3 322 39.8
Sp1g13810 Schrenkiella parvula HOM05D004669 ORTHO05D005767 5.2e-44 182.6 332 38.9
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 1.2e-43 181.4 391 37.9
ECA247G1145 Erigeron canadensis HOM05D004669 ORTHO05D005767 2.6e-43 180.3 349 38.4
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 4.4e-43 179.5 420 35.7
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 9.8e-43 178.3 416 35.1
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 1.3e-42 177.9 420 35.2
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 3.7e-42 176.4 416 34.9
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 4.9e-42 176.0 420 35.2
GSVIVG01017243001 Vitis vinifera HOM05D004669 ORTHO05D005767 3.2e-41 173.3 416 35.6
MBI04_g45208_MAGBIO Magnolia biondii HOM05D004669 ORTHO05D005767 7.1e-41 172.2 420 36.0
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 9.2e-41 171.8 420 35.7
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 3.5e-40 169.9 419 36.3
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 4.6e-40 169.5 420 35.5
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 4.6e-40 169.5 419 35.3
Sabra01G0138300 Salix brachista HOM05D004669 ORTHO05D005767 7.8e-40 168.7 420 34.3
Sed0020458 Sechium edule HOM05D004669 ORTHO05D005767 7.8e-40 168.7 379 36.4
HanXRQChr04g0096711 Helianthus annuus HOM05D004669 ORTHO05D005767 1.0e-39 168.3 416 35.3
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 1.0e-39 168.3 416 35.3
TAR627G0037 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.3e-39 167.9 414 33.8
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.7e-39 167.5 420 35.0
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.7e-39 167.5 420 35.2
QL05p027590 Quercus lobata HOM05D004669 ORTHO05D005767 1.7e-39 167.5 420 35.2
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 1.7e-39 167.5 419 34.4
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 2.3e-39 167.2 419 34.1
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 3.0e-39 166.8 420 35.5
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 5.1e-39 166.0 338 37.3
Lsat_1_v5_gn_1_33541 Lactuca sativa HOM05D004669 ORTHO05D005767 5.1e-39 166.0 416 34.1
Lj5A68G59 Lonicera japonica HOM05D004669 ORTHO05D005767 5.1e-39 166.0 416 34.9
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 5.1e-39 166.0 419 34.1
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 4.3e-38 162.9 436 32.3
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 7.3e-38 162.2 420 34.0
PSO541G6522 Papaver somniferum HOM05D004669 ORTHO05D005767 7.3e-38 162.2 430 31.6
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 7.3e-38 162.2 419 33.7
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 1.6e-37 161.0 419 33.9
Actinidia01772 Actinidia chinensis HOM05D004669 ORTHO05D005767 2.1e-37 160.6 423 34.0
Peaxi162Scf00015g00456 Petunia axillaris HOM05D004669 ORTHO05D005767 2.8e-37 160.2 419 34.4
Sed0001284 Sechium edule HOM05D004669 ORTHO05D005767 2.8e-37 160.2 418 35.4
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 3.6e-37 159.8 419 33.4
Phvul.009G217600 Phaseolus vulgaris HOM05D004669 ORTHO05D005767 3.6e-37 159.8 416 33.4
CAN.G438.78 Capsicum annuum HOM05D004669 ORTHO05D005767 6.2e-37 159.1 428 33.9
CiPaw.02G154600 Carya illinoinensis HOM05D004669 ORTHO05D005767 6.2e-37 159.1 418 34.7
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 8.1e-37 158.7 419 34.1
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 1.1e-36 158.3 416 34.4
Medtr7g076230 Medicago truncatula HOM05D004669 ORTHO05D005767 1.8e-36 157.5 436 31.7
MSTRG.22725 Avicennia marina HOM05D004669 ORTHO05D005767 2.3e-36 157.1 433 31.6
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 2.3e-36 157.1 416 33.7
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 3.1e-36 156.8 439 33.3
ECA247G3964 Erigeron canadensis HOM05D004669 ORTHO05D005767 3.1e-36 156.8 375 34.7
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 4.0e-36 156.4 419 33.4
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 4.0e-36 156.4 420 34.0
Ca_02514_v3 Cicer arietinum L. HOM05D004669 ORTHO05D005767 2.0e-35 154.1 432 31.5
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 2.0e-35 154.1 423 32.9
Cfa002013 Carpinus fangiana HOM05D004669 ORTHO05D005767 2.6e-35 153.7 420 33.6
vmacro18956 Vaccinium macrocarpon HOM05D004669 ORTHO05D005767 3.4e-35 153.3 413 34.6
Sed0010016 Sechium edule HOM05D004669 ORTHO05D005767 4.4e-35 152.9 418 35.2
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 5.8e-35 152.5 420 32.9
Haze_16509 Corylus avellana HOM05D004669 ORTHO05D005767 9.9e-35 151.8 420 33.6
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 9.9e-35 151.8 428 30.6
Migut.I00803 Erythranthe guttata HOM05D004669 ORTHO05D005767 2.9e-34 150.2 416 32.0
Mapoly0001s0129 Marchantia polymorpha HOM05D004669 ORTHO05D005767 2.9e-34 150.2 421 32.5
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 2.9e-34 150.2 417 32.9
Oeu052287.2 Olea europaea HOM05D004669 ORTHO05D005767 6.4e-34 149.1 420 32.1
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 1.4e-33 147.9 436 31.2
Nn8g39375 Nelumbo nucifera HOM05D004669 ORTHO05D005767 2.4e-33 147.1 416 32.5
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 5.4e-33 146.0 427 31.6
THA.LOC104812492 Tarenaya hassleriana HOM05D004669 ORTHO05D005767 1.2e-32 144.8 422 31.0
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 6.0e-32 142.5 287 38.3
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 6.0e-32 142.5 414 31.9
VMungo1309G3168 Vigna mungo HOM05D004669 ORTHO05D005767 1.3e-31 141.4 420 31.0
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 3.0e-31 140.2 172 48.8
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 1.1e-30 138.3 419 31.3
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 1.4e-28 131.3 420 31.0
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 1.8e-28 131.0 416 30.8
ECA247G0606 Erigeron canadensis HOM05D004669 ORTHO05D005767 4.0e-28 129.8 164 45.7
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 1.5e-27 127.9 172 45.3
FAN26G1001 Fragaria x ananassa HOM05D004669 ORTHO05D005767 2.0e-27 127.5 81 74.1
MD06G1214300 Malus domestica HOM05D004669 ORTHO05D005767 7.1e-25 119.0 79 70.9
SMO174G0024 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.3e-23 114.8 79 78.5
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 2.1e-21 107.5 412 27.4
HPP92_024437 Vanilla planifolia HOM05D004669 ORTHO05D005767 6.4e-18 95.9 277 32.1
ECA247G2328 Erigeron canadensis HOM05D004669 ORTHO05D005767 4.2e-17 93.2 186 36.6
Actinidia15803 Actinidia chinensis HOM05D004669 ORTHO05D005767 8.7e-15 85.5 171 37.4
Psat3g100960 Pisum sativum HOM05D004669 ORTHO05D005767 1.1e-14 85.1 263 29.3
MD09G1221500 Malus domestica HOM05D004669 ORTHO05D005767 1.9e-14 84.3 81 53.1
Psat4g082440 Pisum sativum HOM05D004669 ORTHO05D005767 3.3e-14 83.6 79 55.7
PRCOL_00000917 Prasinoderma coloniale HOM05D004669 ORTHO05D005767 4.3e-14 83.2 409 26.7
PSO832G2238 Papaver somniferum HOM05D004669 ORTHO05D005767 9.6e-14 82.0 172 35.5
PSO832G4299 Papaver somniferum HOM05D004669 ORTHO05D005767 9.6e-14 82.0 172 35.5
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 6.2e-13 79.3 70 60.0
Actinidia15802 Actinidia chinensis HOM05D004669 ORTHO05D005767 8.1e-13 79.0 108 46.3
TAR627G0283 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.8e-12 77.8 108 46.3
unitig_0.g1124 Utricularia gibba HOM05D004669 ORTHO05D005767 2.0e-11 74.3 171 33.3
DCAR_000230 Daucus carota HOM05D004669 ORTHO05D005767 9.9e-11 72.0 100 47.0
HanXRQChr04g0097231 Helianthus annuus HOM05D004669 ORTHO05D005767 1.3e-10 71.6 135 40.7
CDE02G1289 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 1.6e-08 64.7 108 38.0


User provided reference genes

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