Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.2e-274 948.3 475 100.0
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 9.6e-113 411.4 421 58.7
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.9e-60 237.7 421 42.3
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 3.0e-58 230.3 416 40.6
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.5e-57 228.0 423 38.8
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 5.7e-57 226.1 428 39.7
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 1.7e-56 224.6 413 41.4
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 2.8e-56 223.8 468 36.5
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 4.8e-56 223.0 423 40.4
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.3e-56 222.6 464 36.9
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 8.2e-56 222.2 424 39.4
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 8.2e-56 222.2 423 40.2
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 8.2e-56 222.2 419 40.3
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 1.4e-55 221.5 438 37.7
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 1.8e-55 221.1 423 38.8
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 1.8e-55 221.1 420 40.7
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.4e-55 220.7 429 38.5
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 2.4e-55 220.7 428 39.5
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 3.1e-55 220.3 428 37.4
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 3.1e-55 220.3 419 40.1
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 3.1e-55 220.3 417 39.1
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.1e-55 220.3 423 38.8
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 5.3e-55 219.5 429 37.5
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 5.3e-55 219.5 429 38.5
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 7.0e-55 219.2 428 37.1
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 7.0e-55 219.2 428 37.1
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 7.0e-55 219.2 428 37.1
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 7.0e-55 219.2 427 37.5
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 9.1e-55 218.8 418 37.8
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 2.0e-54 217.6 417 39.1
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 2.6e-54 217.2 439 39.4
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 2.6e-54 217.2 414 39.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 2.6e-54 217.2 419 40.3
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 3.5e-54 216.9 420 38.6
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.5e-54 216.9 413 38.7
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 3.5e-54 216.9 410 39.0
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 3.5e-54 216.9 419 37.7
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 4.5e-54 216.5 420 40.0
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 4.5e-54 216.5 414 39.6
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 5.9e-54 216.1 428 39.0
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 1.0e-53 215.3 421 38.5
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.0e-53 215.3 416 38.7
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.0e-53 215.3 420 39.3
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.7e-53 214.5 422 39.3
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 2.2e-53 214.2 430 38.6
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 2.2e-53 214.2 423 39.7
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 2.2e-53 214.2 421 41.1
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 5.0e-53 213.0 417 39.6
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 5.0e-53 213.0 420 39.3
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 5.0e-53 213.0 421 38.5
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.0e-53 213.0 423 40.4
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 6.5e-53 212.6 426 39.4
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.5e-53 212.2 425 38.1
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.1e-52 211.8 434 37.8
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 1.1e-52 211.8 427 38.6
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.5e-52 211.5 426 37.1
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 1.9e-52 211.1 437 39.1
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.9e-52 211.1 423 37.6
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 2.5e-52 210.7 420 39.0
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.5e-52 210.7 417 39.6
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.5e-52 210.7 440 38.0
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 2.5e-52 210.7 425 36.9
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.5e-52 210.7 429 39.2
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 3.2e-52 210.3 436 39.7
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 4.2e-52 209.9 416 39.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 7.2e-52 209.1 423 39.0
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 1.6e-51 208.0 456 36.0
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 1.6e-51 208.0 405 39.8
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-51 207.6 418 38.5
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.7e-51 207.2 422 39.1
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.6e-51 206.8 418 38.8
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.7e-51 206.5 426 37.1
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 4.7e-51 206.5 413 39.5
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 4.7e-51 206.5 426 38.5
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 6.1e-51 206.1 440 37.3
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.0e-51 205.7 425 37.6
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.0e-50 205.3 426 39.4
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 1.0e-50 205.3 424 39.4
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.0e-50 205.3 428 38.1
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.4e-50 204.9 205 57.6
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-50 204.9 425 37.4
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-50 204.9 425 37.4
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 1.4e-50 204.9 427 39.1
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.8e-50 204.5 481 35.3
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 3.0e-50 203.8 426 37.8
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 3.0e-50 203.8 423 38.5
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 5.2e-50 203.0 423 36.9
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 8.8e-50 202.2 420 38.1
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 1.2e-49 201.8 430 37.0
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.2e-49 201.8 420 36.9
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 1.2e-49 201.8 417 38.1
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.3e-49 200.3 408 37.0
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 3.3e-49 200.3 433 37.4
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 4.4e-49 199.9 410 37.6
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 1.3e-48 198.4 414 39.9
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 1.7e-48 198.0 400 40.5
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 4.8e-48 196.4 473 35.1
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 4.8e-48 196.4 282 46.8
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 4.8e-48 196.4 412 37.1
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 2.4e-47 194.1 425 36.5
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.7e-46 190.7 308 43.5
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 7.7e-46 189.1 474 34.0
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 2.5e-44 184.1 186 56.5
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.2e-44 183.3 431 36.2
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 7.2e-44 182.6 398 36.9
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 2.1e-43 181.0 405 34.8
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.2e-38 165.2 524 31.5
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.3e-37 161.8 345 38.6
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 3.8e-37 160.2 428 35.3
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 3.8e-37 160.2 336 36.9
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 1.9e-36 157.9 381 34.4
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 3.6e-35 153.7 575 28.5
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 4.7e-35 153.3 337 35.3
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 8.9e-34 149.1 384 33.1
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 2.2e-32 144.4 179 52.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 2.8e-32 144.1 407 32.7
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 7.0e-31 139.4 353 34.0
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 7.0e-31 139.4 353 34.0
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 7.0e-31 139.4 353 34.0
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 2.0e-30 137.9 317 36.3
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 5.9e-30 136.3 161 50.3
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 1.1e-28 132.1 235 40.0
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 3.0e-21 107.5 102 60.8
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 4.3e-20 103.6 92 57.6
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.3e-18 97.8 267 32.6
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 3.1e-18 97.4 308 30.2
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 3.3e-12 77.4 81 54.3
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.5e-09 68.6 95 46.3
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 1.5e-09 68.6 48 66.7
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 1.7e-08 65.1 123 38.2
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.2e-08 64.7 65 52.3
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.9e-08 64.3 65 50.8
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 6.4e-08 63.2 56 64.3
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 8.3e-08 62.8 70 51.4
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-07 61.6 147 34.7
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 1.9e-07 61.6 153 36.6
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.2e-06 58.9 54 59.3


User provided reference genes

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