Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.8e-51 204.9 99 100.0
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-47 192.6 99 93.9
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.5e-47 190.7 99 91.9
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-43 179.5 99 88.9
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.5e-39 165.2 99 81.8
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.5e-39 163.3 88 87.5
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-36 156.4 84 91.7
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-33 146.0 99 74.7
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-32 142.9 92 79.3
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-31 139.4 76 89.5
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.3e-31 137.1 84 79.8
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 9.8e-28 126.7 111 61.3
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-25 119.8 65 93.8
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 3.0e-24 115.2 111 54.1
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-24 113.6 62 90.3
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-23 113.2 62 93.5
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-23 112.8 62 90.3
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 2.5e-23 112.1 108 54.6
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.2e-22 107.5 62 87.1
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 6.8e-21 104.0 108 48.1
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 2.0e-20 102.4 96 53.1
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.0e-20 102.4 95 52.6
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 2.6e-20 102.1 97 53.6
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 3.4e-20 101.7 96 55.2
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 3.4e-20 101.7 94 53.2
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 3.4e-20 101.7 96 53.1
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 3.4e-20 101.7 108 49.1
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 4.4e-20 101.3 96 53.1
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 4.4e-20 101.3 93 53.8
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 5.8e-20 100.9 96 54.2
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 5.8e-20 100.9 93 53.8
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 7.5e-20 100.5 95 54.7
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 9.8e-20 100.1 95 51.6
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-19 99.8 96 55.2
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-19 99.8 96 55.2
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.3e-19 99.8 96 53.1
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 1.7e-19 99.4 93 53.8
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.7e-19 99.4 96 52.1
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 2.9e-19 98.6 96 52.1
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.9e-19 98.6 97 51.5
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.9e-19 98.6 97 51.5
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.7e-19 98.2 95 52.6
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 3.7e-19 98.2 106 47.2
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 3.7e-19 98.2 96 52.1
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 3.7e-19 98.2 96 52.1
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 4.9e-19 97.8 108 45.4
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 4.9e-19 97.8 94 52.1
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 4.9e-19 97.8 96 50.0
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 4.9e-19 97.8 92 55.4
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 6.4e-19 97.4 96 54.2
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 6.4e-19 97.4 95 51.6
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 6.4e-19 97.4 96 52.1
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 8.3e-19 97.1 96 55.2
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 8.3e-19 97.1 95 51.6
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.1e-18 96.7 93 52.7
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.1e-18 96.7 110 48.2
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.9e-18 95.9 109 46.8
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.9e-18 95.9 96 51.0
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.4e-18 95.5 94 51.1
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 3.2e-18 95.1 96 51.0
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 4.1e-18 94.7 95 48.4
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.1e-18 94.7 96 51.0
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 4.1e-18 94.7 95 50.5
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.4e-18 94.4 96 51.0
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 5.4e-18 94.4 96 49.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 5.4e-18 94.4 96 52.1
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 7.0e-18 94.0 95 50.5
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.2e-17 93.2 95 53.7
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.2e-17 93.2 96 51.0
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.2e-17 93.2 95 49.5
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.6e-17 92.8 95 52.6
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.0e-17 92.4 85 52.9
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 2.0e-17 92.4 94 50.0
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 2.0e-17 92.4 94 47.9
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.0e-17 92.4 95 52.6
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.7e-17 92.0 92 53.3
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 2.7e-17 92.0 95 51.6
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 2.7e-17 92.0 95 48.4
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.5e-17 91.7 95 48.4
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 3.5e-17 91.7 97 47.4
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.6e-17 91.3 95 51.6
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 49.5
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 50.5
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 50.5
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 52.6
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 49.5
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 49.5
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 49.5
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 6.0e-17 90.9 96 50.0
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 6.0e-17 90.9 95 49.5
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 1.0e-16 90.1 95 48.4
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 1.0e-16 90.1 109 44.0
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.0e-16 90.1 54 87.0
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.3e-16 89.7 95 49.5
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-16 89.7 95 50.5
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.3e-16 89.7 95 50.5
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.3e-16 89.7 96 46.9
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.3e-16 89.7 95 49.5
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 1.3e-16 89.7 95 48.4
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.3e-16 89.7 95 46.3
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.7e-16 89.4 95 49.5
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 1.7e-16 89.4 96 46.9
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 1.7e-16 89.4 96 47.9
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 2.3e-16 89.0 95 50.5
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 2.3e-16 89.0 109 45.0
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 2.3e-16 89.0 96 47.9
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 3.0e-16 88.6 95 50.5
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 3.0e-16 88.6 96 50.0
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 3.0e-16 88.6 95 49.5
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 3.9e-16 88.2 95 49.5
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.9e-16 88.2 95 48.4
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 5.0e-16 87.8 95 47.4
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 5.0e-16 87.8 109 44.0
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 5.0e-16 87.8 95 49.5
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 8.6e-16 87.0 95 48.4
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 8.6e-16 87.0 96 49.0
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 1.1e-15 86.7 96 47.9
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 1.1e-15 86.7 96 52.1
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.5e-15 86.3 100 42.0
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.5e-15 86.3 96 45.8
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.9e-15 85.9 95 48.4
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.9e-15 85.9 95 48.4
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.9e-15 85.9 95 48.4
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.9e-15 85.9 95 48.4
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.9e-15 85.9 95 48.4
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.5e-15 85.5 95 46.3
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.5e-15 85.5 95 48.4
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 2.5e-15 85.5 95 46.3
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.5e-15 85.5 95 48.4
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 3.3e-15 85.1 96 49.0
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 4.3e-15 84.7 96 47.9
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.3e-15 84.7 95 48.4
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 5.6e-15 84.3 96 47.9
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 5.6e-15 84.3 96 46.9
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 7.3e-15 84.0 94 48.9
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 7.3e-15 84.0 96 44.8
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.2e-14 83.2 96 47.9
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.2e-14 83.2 96 47.9
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.2e-14 83.2 96 47.9
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.2e-14 83.2 96 50.0
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 6.2e-14 80.9 84 51.2
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 4.0e-13 78.2 95 45.3
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.2e-12 76.6 117 40.2
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.4e-12 75.1 105 42.9
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 4.4e-12 74.7 74 48.6
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.9e-10 69.3 77 49.4
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 7.1e-10 67.4 45 62.2
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.1e-09 65.9 87 41.4
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.3e-08 63.2 51 51.0
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 1.7e-08 62.8 55 47.3
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.1e-06 55.8 91 36.3


User provided reference genes

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