Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 0.0e+00 1451.0 771 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.4e-169 600.9 864 43.9
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 4.0e-161 572.8 866 43.0
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.0e-160 570.5 864 42.9
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 5.8e-160 568.9 851 43.0
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 1.3e-159 567.8 850 43.1
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 4.9e-159 565.8 845 43.4
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 7.1e-158 562.0 845 42.8
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 2.1e-157 560.5 848 42.5
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 5.6e-155 552.4 849 42.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.3e-154 551.2 841 41.5
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 3.7e-154 549.7 867 41.5
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.4e-153 547.0 847 42.7
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 5.3e-153 545.8 833 43.0
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 2.0e-152 543.9 838 42.6
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 2.6e-152 543.5 830 42.0
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 3.4e-152 543.1 862 40.7
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 1.3e-151 541.2 847 41.8
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 9.3e-150 535.0 862 41.4
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 9.3e-150 535.0 853 41.1
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 1.2e-149 534.6 844 41.9
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 1.6e-149 534.3 848 42.0
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 2.1e-149 533.9 848 42.6
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 2.7e-149 533.5 850 42.6
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 4.6e-149 532.7 842 41.4
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 7.9e-149 531.9 859 41.3
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.5e-147 527.7 857 41.9
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 1.9e-147 527.3 819 41.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.3e-147 526.2 857 41.8
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 1.3e-146 524.6 850 41.3
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 3.7e-146 523.1 857 41.7
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.8e-146 522.7 847 41.1
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 1.1e-145 521.5 853 40.8
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.1e-145 521.5 847 41.3
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.1e-145 521.5 855 39.4
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.1e-145 520.0 847 41.3
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.1e-145 520.0 847 41.3
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 3.1e-145 520.0 846 41.4
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.9e-145 518.8 843 41.3
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.5e-144 517.7 847 41.1
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.4e-144 516.5 847 41.0
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 5.8e-144 515.8 858 39.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 1.7e-143 514.2 857 41.9
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.7e-143 514.2 844 40.3
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 3.8e-143 513.1 825 41.9
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 3.8e-143 513.1 826 41.5
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 6.5e-143 512.3 853 42.2
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 6.5e-143 512.3 776 41.9
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.4e-142 511.1 855 39.6
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 2.7e-141 506.9 828 42.0
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 4.6e-141 506.1 860 40.0
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 7.9e-141 505.4 828 41.1
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 7.9e-141 505.4 848 40.2
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 1.8e-140 504.2 840 40.5
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.0e-140 503.4 851 40.8
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 5.1e-140 502.7 834 40.2
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 3.3e-139 500.0 829 40.9
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 3.3e-139 500.0 842 40.1
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 7.4e-139 498.8 872 38.4
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 7.4e-139 498.8 870 38.5
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.3e-138 498.0 834 40.8
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.2e-138 497.3 843 39.0
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.7e-138 496.5 889 39.1
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 3.7e-138 496.5 851 40.7
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 4.1e-137 493.0 826 39.7
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 4.1e-137 493.0 845 39.4
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 9.0e-137 491.9 820 40.2
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 9.0e-137 491.9 780 40.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 9.0e-137 491.9 852 40.4
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.2e-136 491.5 801 39.8
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.5e-136 491.1 851 40.4
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 5.9e-136 489.2 816 39.7
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 1.3e-135 488.0 821 39.5
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 2.9e-135 486.9 835 40.4
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 3.8e-135 486.5 818 39.5
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 3.8e-135 486.5 818 39.5
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.1e-134 485.0 955 36.3
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 2.5e-134 483.8 816 39.7
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.2e-134 483.4 911 38.1
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 4.2e-134 483.0 837 39.5
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 1.2e-133 481.5 778 41.1
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.7e-133 480.3 795 39.7
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 7.9e-133 478.8 838 39.6
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.9e-132 476.5 909 38.0
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 2.5e-131 473.8 841 38.3
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 3.3e-131 473.4 818 38.8
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.3e-130 471.5 828 39.1
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 3.7e-130 469.9 820 38.9
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.4e-129 468.0 836 39.8
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 3.1e-129 466.8 843 38.3
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 5.3e-129 466.1 824 39.6
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 4.5e-128 463.0 814 38.7
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.2e-126 456.4 870 37.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 9.4e-126 455.3 858 38.8
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 9.4e-126 455.3 744 40.5
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.1e-125 454.1 890 37.8
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.7e-125 453.8 840 38.3
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 3.0e-124 450.3 864 36.6
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 1.5e-123 448.0 831 37.8
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.8e-121 441.0 815 37.3
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 9.1e-121 438.7 811 39.2
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.5e-120 438.0 856 36.6
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 4.5e-120 436.4 812 38.4
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 6.5e-119 432.6 579 43.4
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 3.2e-118 430.3 815 36.7
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 2.1e-117 427.6 835 37.2
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.8e-116 424.5 818 36.6
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 3.0e-116 423.7 835 37.7
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 2.6e-115 420.6 831 36.8
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 7.4e-115 419.1 841 36.6
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.3e-106 391.7 630 40.3
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 1.6e-101 374.8 894 32.9
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.7e-98 364.8 480 44.0
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 5.5e-94 349.7 475 43.6
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.3e-90 338.6 474 42.6
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.4e-76 292.0 514 38.3
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 1.7e-71 275.0 631 31.9
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 4.0e-60 237.3 957 26.8
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 2.2e-58 231.5 414 37.2
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 2.2e-58 231.5 429 37.8
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.7e-55 221.9 483 35.4
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 9.6e-54 216.1 305 39.7
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 4.4e-51 207.2 380 37.4
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 3.8e-50 204.1 298 43.6
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.2e-40 172.6 249 41.0
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.5e-35 155.6 348 35.6
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.7e-34 152.1 157 49.7
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.8e-31 142.1 353 34.8
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.8e-31 142.1 370 33.5
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 2.3e-31 141.7 368 35.3
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.5e-27 127.5 169 40.2
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.8e-15 89.0 321 30.5
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 9.7e-14 83.2 139 36.0
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.8e-13 80.9 153 43.1
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.2e-13 80.1 74 51.4
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.4e-12 79.3 153 43.1
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.2e-11 76.3 126 38.9
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.0e-11 75.5 182 32.4
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 4.5e-11 74.3 317 32.8
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.5e-09 68.6 88 45.5
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 5.5e-09 67.4 93 41.9
SMO115G0354 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 1.2e-08 66.2 95 51.6
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 1.0e-07 63.2 75 44.0


User provided reference genes

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