Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.7e-108 396.0 195 100.0
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.7e-84 316.2 195 77.9
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 8.5e-84 313.9 195 76.9
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 9.4e-83 310.5 195 76.4
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 2.7e-82 308.9 195 74.9
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 3.4e-80 302.0 195 70.8
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.7e-79 299.7 195 71.3
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 2.2e-79 299.3 195 71.3
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 4.8e-79 298.1 195 69.7
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 6.3e-79 297.7 195 70.8
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 8.3e-79 297.4 195 70.3
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 8.3e-79 297.4 195 69.7
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 1.4e-78 296.6 195 70.3
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 1.4e-78 296.6 195 71.8
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.8e-78 296.2 195 70.8
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 1.8e-78 296.2 194 69.6
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 1.8e-78 296.2 195 69.7
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.8e-78 296.2 195 70.3
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 2.4e-78 295.8 195 70.3
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 3.1e-78 295.4 195 68.7
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 5.4e-78 294.7 195 68.7
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 5.4e-78 294.7 195 69.2
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 7.0e-78 294.3 195 69.7
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 9.1e-78 293.9 195 69.7
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 9.1e-78 293.9 195 70.8
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 9.1e-78 293.9 195 70.8
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 1.2e-77 293.5 195 69.2
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 1.2e-77 293.5 195 71.8
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 1.2e-77 293.5 195 69.2
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 1.6e-77 293.1 195 70.3
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 1.6e-77 293.1 195 68.7
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.6e-77 293.1 195 70.8
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.0e-77 292.7 195 68.7
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 2.0e-77 292.7 195 68.7
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 2.0e-77 292.7 195 68.7
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 2.0e-77 292.7 195 68.7
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 2.0e-77 292.7 195 68.7
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 2.0e-77 292.7 195 69.7
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.0e-77 292.7 192 71.4
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 2.7e-77 292.4 195 68.7
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 3.5e-77 292.0 195 69.7
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.5e-77 292.0 195 68.2
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 3.5e-77 292.0 195 69.7
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 4.5e-77 291.6 195 68.7
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 4.5e-77 291.6 195 69.2
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 5.9e-77 291.2 195 68.2
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 5.9e-77 291.2 195 67.2
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 7.7e-77 290.8 195 67.7
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 7.7e-77 290.8 194 68.6
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 1.0e-76 290.4 195 69.7
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 1.0e-76 290.4 195 69.7
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 1.7e-76 289.7 195 69.2
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 1.7e-76 289.7 195 68.2
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 2.3e-76 289.3 195 68.7
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 2.3e-76 289.3 195 67.7
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 5.0e-76 288.1 195 68.7
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 5.0e-76 288.1 195 70.3
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 6.5e-76 287.7 195 68.2
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 8.6e-76 287.3 195 68.7
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 8.6e-76 287.3 195 68.7
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 8.6e-76 287.3 195 68.7
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 8.6e-76 287.3 195 68.7
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 8.6e-76 287.3 195 68.7
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.1e-75 287.0 195 68.2
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 1.5e-75 286.6 195 67.7
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 1.5e-75 286.6 195 67.7
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.5e-75 286.6 215 65.1
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 1.9e-75 286.2 195 67.7
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.9e-75 286.2 215 65.1
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.9e-75 286.2 195 67.7
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.9e-75 286.2 201 66.7
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.9e-75 286.2 195 66.7
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 1.9e-75 286.2 195 67.7
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.5e-75 285.8 195 66.7
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 3.2e-75 285.4 195 68.2
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 9.5e-75 283.9 195 66.7
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.2e-74 283.5 195 68.2
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 1.2e-74 283.5 195 65.6
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.1e-74 282.7 195 68.2
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 6.1e-74 281.2 195 67.7
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 1.0e-73 280.4 195 65.6
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 1.0e-73 280.4 191 66.5
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 2.3e-73 279.3 195 66.7
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 4.0e-73 278.5 179 73.2
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 6.8e-73 277.7 195 67.2
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 1.2e-72 276.9 195 65.1
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.0e-72 276.2 215 61.9
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 1.3e-71 273.5 189 66.7
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 4.9e-71 271.6 226 59.3
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 8.3e-71 270.8 194 66.5
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.4e-70 270.0 176 71.6
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.8e-70 269.6 195 67.7
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 3.1e-70 268.9 188 64.4
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 3.1e-70 268.9 195 66.7
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 7.0e-70 267.7 236 56.4
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.6e-69 266.5 211 59.7
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 7.8e-69 264.2 175 69.7
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 1.7e-68 263.1 173 74.0
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 5.6e-67 258.1 161 72.0
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.3e-65 252.7 160 71.9
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 3.0e-65 252.3 211 59.2
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.5e-64 250.0 195 59.5
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.8e-62 243.0 298 44.3
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 7.0e-62 241.1 166 66.9
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 3.0e-60 235.7 275 46.5
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 3.3e-59 232.3 284 45.8
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 1.3e-52 210.3 129 77.5
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 3.3e-51 205.7 179 56.4
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 2.1e-50 203.0 192 54.2
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 1.4e-49 200.3 120 75.0
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.4e-49 200.3 120 74.2
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 3.7e-47 192.2 133 67.7
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 8.3e-47 191.0 135 71.1
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.1e-46 190.7 120 70.8
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 2.8e-42 176.0 124 63.7
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.1e-41 174.1 124 63.7
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 6.8e-41 171.4 115 72.2
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 3.8e-39 165.6 174 51.7
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 6.4e-39 164.9 115 68.7
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 3.0e-36 156.0 113 64.6
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 1.4e-33 147.1 182 44.0
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 2.4e-33 146.4 93 69.9
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 5.2e-33 145.2 98 68.4
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 1.9e-30 136.7 89 70.8
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 9.0e-25 117.9 73 69.9
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 1.5e-24 117.1 71 71.8
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 3.4e-24 115.9 88 60.2
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 3.4e-24 115.9 88 60.2
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 7.6e-24 114.8 76 64.5
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 2.9e-23 112.8 73 65.8
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 2.9e-23 112.8 73 65.8
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 2.9e-23 112.8 73 65.8
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 3.9e-20 102.4 66 66.7
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 3.4e-16 89.4 97 47.4
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.7e-13 79.7 58 63.8
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.3e-11 72.4 55 65.5
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 9.6e-11 71.2 75 50.7
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 9.6e-11 71.2 75 50.7
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 3.7e-10 69.3 54 59.3
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 1.4e-09 67.4 100 43.0
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 4.9e-07 58.9 85 41.2
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 1.4e-06 57.4 56 50.0


User provided reference genes

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