Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-256 889.0 439 100.0
SMO199G0097 Selaginella moellendorffii HOM05D024098 ORTHO05D374896 3.1e-65 253.4 373 46.9
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.9e-63 246.1 244 58.6
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.6e-51 205.3 208 59.6
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-48 198.0 176 63.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.1e-43 181.8 240 48.3
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 5.3e-41 172.9 239 43.9
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 1.5e-40 171.4 253 42.7
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.4e-40 170.2 254 42.5
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 7.6e-40 169.1 254 42.5
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.3e-39 168.3 241 42.7
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.3e-39 168.3 255 42.0
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.7e-39 167.9 241 43.2
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-39 167.5 131 69.5
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.9e-39 167.2 253 41.9
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.1e-38 165.2 256 41.0
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.1e-38 165.2 255 40.8
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 1.4e-38 164.9 256 41.0
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.4e-38 164.9 255 41.6
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 5.5e-38 162.9 254 40.9
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 9.3e-38 162.2 239 42.3
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.2e-37 161.8 240 43.3
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-37 161.4 145 65.5
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.1e-37 161.0 238 42.0
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 2.7e-37 160.6 255 40.8
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 6.1e-37 159.5 255 40.0
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.1e-37 159.5 239 41.8
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 7.9e-37 159.1 263 39.2
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 7.9e-37 159.1 252 40.5
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 1.0e-36 158.7 256 40.2
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.3e-36 158.3 239 41.0
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.3e-36 158.3 246 41.5
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 1.3e-36 158.3 256 40.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 1.3e-36 158.3 238 41.6
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.3e-36 157.5 236 41.5
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.3e-36 157.5 240 40.8
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.9e-36 156.8 238 42.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 3.9e-36 156.8 240 42.5
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.1e-35 155.2 254 41.3
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.1e-35 155.2 231 42.0
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 1.1e-35 155.2 253 39.5
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.5e-35 154.8 253 39.1
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.5e-35 154.8 256 38.3
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 1.9e-35 154.5 254 39.8
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 2.5e-35 154.1 253 40.3
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.5e-35 154.1 253 40.3
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.5e-35 154.1 253 40.3
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.5e-35 154.1 256 39.1
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.5e-35 154.1 127 66.9
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 4.3e-35 153.3 238 40.3
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 5.7e-35 152.9 253 38.7
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 5.7e-35 152.9 253 39.9
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 7.4e-35 152.5 253 38.7
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.6e-34 151.4 254 39.8
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 1.6e-34 151.4 253 39.9
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 1.6e-34 151.4 253 39.9
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.2e-34 151.0 244 41.4
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 2.2e-34 151.0 253 39.9
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 2.8e-34 150.6 238 40.3
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.8e-34 150.6 220 43.2
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 3.7e-34 150.2 256 39.1
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 4.8e-34 149.8 253 37.9
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 4.8e-34 149.8 253 39.5
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 4.8e-34 149.8 236 40.7
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 6.3e-34 149.4 254 38.2
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.4e-33 148.3 238 40.3
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.8e-33 147.9 239 39.3
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.8e-33 147.9 239 38.9
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 1.8e-33 147.9 237 41.4
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 2.4e-33 147.5 239 39.3
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.4e-33 147.5 256 39.1
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.4e-33 147.5 256 39.1
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.4e-33 147.5 253 37.9
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 4.1e-33 146.7 254 37.4
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 5.3e-33 146.4 263 39.2
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 5.3e-33 146.4 255 38.4
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 9.0e-33 145.6 254 37.4
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 9.0e-33 145.6 238 39.1
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 9.0e-33 145.6 239 38.5
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 1.2e-32 145.2 255 37.6
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 2.0e-32 144.4 237 40.1
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 2.0e-32 144.4 240 39.6
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 2.0e-32 144.4 255 37.3
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 2.0e-32 144.4 256 39.1
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.6e-32 144.1 254 37.0
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.6e-32 144.1 237 39.7
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.6e-32 144.1 92 79.3
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 3.4e-32 143.7 308 35.7
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 4.5e-32 143.3 237 39.7
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 5.9e-32 142.9 255 36.1
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 7.7e-32 142.5 239 37.7
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.7e-31 141.4 237 39.2
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 2.2e-31 141.0 239 38.9
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 2.2e-31 141.0 239 38.1
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 2.2e-31 141.0 289 35.3
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 2.9e-31 140.6 238 38.2
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 2.9e-31 140.6 237 41.4
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.9e-31 140.6 81 88.9
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 5.0e-31 139.8 238 38.2
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 5.0e-31 139.8 238 39.5
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 6.5e-31 139.4 238 38.2
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 6.5e-31 139.4 238 38.2
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 8.5e-31 139.0 238 38.2
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 8.5e-31 139.0 238 38.2
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 8.5e-31 139.0 239 36.8
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-30 138.3 109 68.8
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 1.4e-30 138.3 242 37.2
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.5e-30 137.5 240 38.3
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 3.2e-30 137.1 238 38.7
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 4.2e-30 136.7 239 38.9
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 5.5e-30 136.3 239 38.9
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 5.5e-30 136.3 238 38.2
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 5.5e-30 136.3 255 36.5
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 5.5e-30 136.3 255 36.5
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 5.5e-30 136.3 238 38.7
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 2.1e-29 134.4 254 37.0
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 2.1e-29 134.4 238 38.2
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.6e-29 133.7 109 67.9
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 7.9e-29 132.5 238 38.2
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 7.9e-29 132.5 236 37.7
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 1.0e-28 132.1 239 37.2
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 1.0e-28 132.1 238 38.2
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.4e-28 131.7 221 41.6
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.4e-28 131.7 239 37.7
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.0e-28 130.6 109 67.0
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 3.9e-28 130.2 207 41.5
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 6.7e-28 129.4 239 36.8
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 3.3e-27 127.1 264 34.8
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 5.7e-27 126.3 220 39.5
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 7.4e-27 125.9 239 36.0
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.3e-26 125.2 196 38.3
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.8e-26 124.0 72 84.7
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.7e-26 123.6 66 90.9
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 4.8e-26 123.2 208 40.4
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-25 120.9 81 75.3
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 4.1e-25 120.2 271 34.3
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 6.9e-25 119.4 190 40.0
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-24 118.6 100 65.0
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 2.0e-24 117.9 217 36.4
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 2.1e-21 107.8 178 39.3
SMO143G0145 Selaginella moellendorffii HOM05D024098 ORTHO05D376391 1.5e-19 101.7 60 83.3
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 2.0e-19 101.3 168 39.9
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.6e-19 100.9 146 39.0
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 5.7e-19 99.8 106 54.7
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 9.7e-19 99.0 231 34.2
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 2.2e-18 97.8 263 30.4
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 8.2e-18 95.9 228 32.5
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.2e-18 95.9 54 90.7
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.0e-15 89.0 173 38.2
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 8.0e-13 79.3 123 39.8
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.0e-12 79.0 166 35.5
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 1.4e-12 78.6 197 32.5
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 5.2e-12 76.6 101 44.6
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.1e-11 75.5 78 52.6
ECA232G4075 Erigeron canadensis HOM05D003501 ORTHO05D004388 5.7e-11 73.2 59 59.3
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-11 73.2 161 36.6
HPP92_000027 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-10 71.6 75 49.3
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 2.4e-09 67.8 35 88.6
Actinidia06069 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.1e-09 67.4 92 43.5
SMO246G0003 Selaginella moellendorffii HOM05D024098 ORTHO05D378739 7.0e-09 66.2 46 76.1
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 2.7e-08 64.3 127 37.8
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 4.5e-08 63.5 86 43.0
EL10As8g23847 Beta vulgaris HOM05D003501 ORTHO05D004388 7.7e-08 62.8 78 46.2
Actinidia15652 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.0e-07 62.4 58 58.6
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.0e-07 62.4 93 39.8
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 3.8e-07 60.5 92 42.4
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.5e-07 59.3 78 46.2
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 3.2e-06 57.4 91 39.6


User provided reference genes

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