Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.8e-44 182.2 89 100.0
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.7e-37 158.3 89 89.9
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.5e-32 141.0 76 89.5
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.7e-32 140.2 76 88.2
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.7e-32 140.2 76 89.5
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.8e-31 137.9 76 89.5
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-30 136.0 76 86.8
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-27 126.3 69 88.4
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-27 125.9 76 84.2
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.6e-27 125.2 76 82.9
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.4e-27 124.4 72 84.7
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.1e-25 117.9 67 89.6
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.2e-21 106.3 88 62.5
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.2e-20 100.9 56 91.1
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.5e-19 99.4 100 52.0
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-19 97.4 54 87.0
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.7e-19 97.4 54 88.9
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-17 92.8 54 87.0
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-17 92.0 54 85.2
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 5.9e-16 87.4 85 52.9
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 2.3e-15 85.5 83 49.4
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.9e-15 85.1 86 47.7
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.9e-14 82.4 88 48.9
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.9e-14 82.4 85 48.2
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 1.9e-14 82.4 85 48.2
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 2.5e-14 82.0 87 47.1
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 3.3e-14 81.6 87 47.1
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 4.2e-14 81.3 86 48.8
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 4.2e-14 81.3 87 47.1
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 5.5e-14 80.9 84 47.6
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 7.2e-14 80.5 87 47.1
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 7.2e-14 80.5 87 48.3
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 7.2e-14 80.5 85 44.7
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 7.2e-14 80.5 84 47.6
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 9.5e-14 80.1 86 46.5
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.5e-14 80.1 87 49.4
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 1.2e-13 79.7 87 48.3
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.6e-13 79.3 87 49.4
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.6e-13 79.3 87 49.4
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.6e-13 79.3 87 47.1
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 1.6e-13 79.3 83 51.8
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.1e-13 79.0 84 47.6
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 2.8e-13 78.6 87 46.0
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.8e-13 78.6 85 47.1
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 2.8e-13 78.6 86 46.5
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 3.6e-13 78.2 83 48.2
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 3.6e-13 78.2 87 43.7
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 4.7e-13 77.8 86 46.5
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 4.7e-13 77.8 83 48.2
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 4.7e-13 77.8 87 46.0
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 4.7e-13 77.8 87 46.0
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 6.1e-13 77.4 88 44.3
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 6.1e-13 77.4 88 44.3
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 6.1e-13 77.4 87 44.8
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.0e-13 77.0 87 48.3
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 8.0e-13 77.0 86 45.3
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 8.0e-13 77.0 87 49.4
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 1.0e-12 76.6 86 45.3
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.0e-12 76.6 84 47.6
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.0e-12 76.6 86 47.7
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.0e-12 76.6 85 45.9
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.4e-12 76.3 85 45.9
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.8e-12 75.9 77 45.5
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 2.3e-12 75.5 87 44.8
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.0e-12 75.1 87 42.5
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 3.0e-12 75.1 85 45.9
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 3.0e-12 75.1 87 44.8
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 4.0e-12 74.7 87 48.3
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 4.0e-12 74.7 88 44.3
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 5.2e-12 74.3 86 41.9
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 6.8e-12 73.9 86 46.5
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 6.8e-12 73.9 87 43.7
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 6.8e-12 73.9 85 43.5
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 8.9e-12 73.6 86 44.2
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.2e-11 73.2 76 46.1
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.2e-11 73.2 86 43.0
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.5e-11 72.8 86 44.2
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.5e-11 72.8 87 43.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.5e-11 72.8 86 43.0
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.5e-11 72.8 87 44.8
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 2.0e-11 72.4 84 40.5
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 2.6e-11 72.0 86 45.3
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 2.6e-11 72.0 86 45.3
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 2.6e-11 72.0 86 45.3
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 3.4e-11 71.6 86 43.0
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.4e-11 71.6 86 43.0
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.4e-11 71.6 86 43.0
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 3.4e-11 71.6 86 43.0
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 3.4e-11 71.6 86 45.3
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 4.4e-11 71.2 86 43.0
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 4.4e-11 71.2 86 44.2
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.4e-11 71.2 86 41.9
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 4.4e-11 71.2 86 44.2
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 5.7e-11 70.9 86 45.3
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 5.7e-11 70.9 86 45.3
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 5.7e-11 70.9 84 44.0
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 5.7e-11 70.9 86 45.3
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 7.5e-11 70.5 86 41.9
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 7.5e-11 70.5 84 41.7
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.5e-11 70.5 86 44.2
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 9.8e-11 70.1 86 45.3
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 9.8e-11 70.1 87 40.2
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 9.8e-11 70.1 84 40.5
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 9.8e-11 70.1 84 41.7
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-10 69.7 86 45.3
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.3e-10 69.7 86 46.5
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 1.3e-10 69.7 86 41.9
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.7e-10 69.3 86 41.9
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 1.7e-10 69.3 86 43.0
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 2.2e-10 68.9 86 41.9
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 2.2e-10 68.9 86 43.0
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.2e-10 68.9 86 41.9
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 2.2e-10 68.9 84 44.0
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 2.2e-10 68.9 84 44.0
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 2.8e-10 68.6 84 46.4
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 3.7e-10 68.2 86 44.2
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 3.7e-10 68.2 87 41.4
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 4.9e-10 67.8 84 42.9
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.9e-10 67.8 86 43.0
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 6.3e-10 67.4 86 40.7
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 8.3e-10 67.0 86 43.0
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 8.3e-10 67.0 86 43.0
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 8.3e-10 67.0 84 39.3
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.1e-09 66.6 86 43.0
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.1e-09 66.6 86 40.7
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.1e-09 66.6 86 43.0
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.1e-09 66.6 86 40.7
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.1e-09 66.6 86 40.7
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 1.1e-09 66.6 86 40.7
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.4e-09 66.2 84 45.2
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.4e-09 66.2 99 37.4
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 2.4e-09 65.5 87 40.2
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 3.1e-09 65.1 86 39.5
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 3.1e-09 65.1 85 41.2
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.1e-09 65.1 87 40.2
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.1e-09 65.1 87 42.5
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 3.1e-09 65.1 87 44.8
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 4.1e-09 64.7 84 40.5
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 5.4e-09 64.3 84 36.9
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 7.0e-09 63.9 44 61.4
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 7.0e-09 63.9 86 39.5
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 9.2e-09 63.5 94 41.5
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.2e-08 63.2 59 50.8
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.5e-08 61.6 87 39.1
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 3.5e-08 61.6 87 39.1
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 5.9e-08 60.8 44 56.8
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 1.0e-07 60.1 80 41.2
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 3.9e-07 58.2 50 48.0
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.5e-06 55.5 50 44.0
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 5.6e-06 54.3 69 44.9


User provided reference genes

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