Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 0.0e+00 1139.8 558 100.0
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 0.0e+00 1138.6 558 99.8
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 7.6e-303 1043.1 552 90.4
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 8.7e-299 1029.6 554 89.0
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.7e-297 1024.2 553 88.6
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.1e-296 1022.7 553 88.4
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.1e-296 1022.7 553 88.4
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 3.1e-296 1021.1 553 88.2
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 4.0e-296 1020.8 557 87.8
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.3e-296 1020.4 553 88.1
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.0e-295 1018.5 554 88.1
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.0e-295 1018.5 557 86.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.6e-295 1018.1 553 87.3
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 2.6e-295 1018.1 552 88.9
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.4e-295 1017.7 557 87.3
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 3.4e-295 1017.7 554 87.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 4.5e-295 1017.3 553 87.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 7.6e-295 1016.5 557 86.9
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.0e-294 1016.1 553 87.5
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 1.0e-294 1016.1 557 87.1
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.0e-294 1016.1 554 88.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.3e-294 1015.8 553 87.5
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 1.3e-294 1015.8 557 86.7
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 2.2e-294 1015.0 557 87.1
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 2.2e-294 1015.0 557 87.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 2.9e-294 1014.6 558 87.1
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-294 1014.6 554 87.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 553 87.5
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 557 87.3
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 557 87.1
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 558 86.9
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 557 86.2
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 553 87.2
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 3.8e-294 1014.2 554 88.3
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 4.9e-294 1013.8 553 87.3
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 6.5e-294 1013.4 557 87.1
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 6.5e-294 1013.4 557 86.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 8.4e-294 1013.1 557 86.9
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 8.4e-294 1013.1 553 87.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.4e-293 1012.3 553 87.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.4e-293 1012.3 548 87.8
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.9e-293 1011.9 557 86.4
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 1.9e-293 1011.9 557 86.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 1.9e-293 1011.9 558 86.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 2.5e-293 1011.5 557 86.7
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 4.2e-293 1010.7 553 86.3
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.5e-293 1010.4 548 88.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 7.1e-293 1010.0 548 87.4
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 7.1e-293 1010.0 557 86.0
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 9.3e-293 1009.6 553 87.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 9.3e-293 1009.6 559 86.2
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 9.3e-293 1009.6 553 86.8
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 9.3e-293 1009.6 558 86.6
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 9.3e-293 1009.6 553 87.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 548 87.4
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 2.1e-292 1008.4 553 86.4
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.7e-292 1008.1 538 89.2
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 2.7e-292 1008.1 553 86.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 3.5e-292 1007.7 548 88.0
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 3.5e-292 1007.7 553 86.1
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 6.0e-292 1006.9 548 87.4
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 6.0e-292 1006.9 558 86.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 7.9e-292 1006.5 548 87.2
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.0e-291 1006.1 548 87.6
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.3e-291 1005.7 553 86.1
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.8e-291 1005.4 553 86.8
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.8e-291 1005.4 553 85.7
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.3e-291 1005.0 557 86.5
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 2.3e-291 1005.0 553 85.7
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 3.0e-291 1004.6 554 85.6
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 3.0e-291 1004.6 548 86.5
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.0e-291 1004.6 548 87.2
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 3.0e-291 1004.6 556 86.9
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 3.9e-291 1004.2 553 85.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 5.1e-291 1003.8 553 85.5
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 5.1e-291 1003.8 574 84.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 8.7e-291 1003.0 553 85.5
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 8.7e-291 1003.0 553 85.5
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 8.7e-291 1003.0 548 87.2
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.9e-290 1001.9 553 85.5
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 4.3e-290 1000.7 557 84.9
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 4.3e-290 1000.7 553 85.4
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 4.3e-290 1000.7 553 85.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 7.4e-290 1000.0 553 85.7
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 6.3e-289 996.9 553 85.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 4.1e-288 994.2 556 86.3
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.4e-287 991.1 580 82.4
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.7e-286 988.8 589 81.3
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.2e-285 984.6 521 89.4
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.2e-284 982.6 557 84.2
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.6e-284 981.1 603 79.4
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 9.7e-282 973.0 587 80.6
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.3e-278 962.6 564 83.0
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.4e-272 941.8 521 85.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-271 939.5 557 82.0
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 3.2e-269 931.4 487 89.9
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 2.5e-261 905.2 540 80.2
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.1e-260 902.1 493 87.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.2e-253 877.1 506 86.8
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.6e-252 875.9 454 90.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.4e-251 872.8 542 78.8
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.3e-246 856.3 553 75.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.7e-225 785.0 553 71.2
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.1e-221 773.5 406 88.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.3e-219 765.8 555 70.6
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 7.5e-218 760.8 534 72.5
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 7.5e-218 760.8 420 86.9
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 8.3e-217 757.3 521 73.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.1e-215 752.7 521 73.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.6e-212 741.9 552 68.7
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.6e-210 734.2 553 67.8
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.6e-204 716.5 557 67.9
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 4.0e-203 711.8 557 65.4
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 8.7e-198 694.1 384 85.7
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.4e-186 655.6 502 67.1
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 2.4e-179 632.9 329 89.4
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 8.8e-166 587.8 312 89.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.2e-152 541.6 463 64.8
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 8.0e-151 538.1 502 58.4
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.5e-141 505.0 500 57.8
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.9e-137 493.0 547 51.6
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.8e-137 492.7 262 87.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.6e-122 442.6 295 74.2
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.0e-121 441.4 504 50.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 3.6e-119 433.0 293 72.0
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 6.8e-118 428.7 243 85.2
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-117 427.2 385 59.0
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.9e-115 420.6 325 66.8
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 3.9e-113 412.9 557 45.1
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 4.4e-109 399.4 351 60.1
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.0e-106 389.0 196 92.3
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-105 387.5 215 89.3
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.3e-104 382.9 222 84.2
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-98 364.4 179 96.1
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 7.6e-93 345.5 245 71.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.1e-91 339.0 267 64.8
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.1e-86 323.6 167 89.2
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-80 303.9 288 57.6
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 3.3e-80 303.5 154 89.0
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.6e-80 302.8 160 87.5
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.4e-78 297.4 156 89.1
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 9.3e-75 285.4 309 52.8
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.3e-68 265.0 152 85.5
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 5.9e-61 239.6 233 61.4
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.9e-60 237.3 148 77.7
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.4e-59 235.0 143 81.1
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.6e-50 204.9 133 76.7
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-50 204.1 122 82.0
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.5e-45 188.3 105 85.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.1e-42 176.4 138 63.8
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 3.3e-40 170.6 113 74.3
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 6.7e-33 146.4 98 76.5
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-26 124.4 75 81.3
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 8.8e-25 119.4 73 80.8
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 9.8e-24 115.9 134 51.5
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-21 107.8 55 92.7
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 5.9e-21 106.7 73 75.3
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.1e-18 98.2 58 81.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.2e-16 92.4 75 64.0
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 7.5e-16 89.7 63 66.7
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.8e-14 85.1 52 76.9
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 7.0e-14 83.2 44 81.8
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.6e-13 82.0 88 58.0
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 6.6e-12 76.6 59 64.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 7.3e-11 73.2 49 67.3


User provided reference genes

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