Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 0.0e+00 1545.4 777 100.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 9.1e-153 545.0 859 40.7
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 5.9e-144 515.8 900 37.9
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 7.7e-144 515.4 821 41.4
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 9.4e-134 481.9 856 35.7
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.2e-133 481.5 838 36.5
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.0e-132 478.4 842 36.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 6.8e-132 475.7 832 36.2
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 3.4e-131 473.4 852 36.0
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 5.7e-131 472.6 857 36.2
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.3e-130 471.5 847 36.4
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.7e-130 471.1 811 35.9
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 3.7e-130 469.9 853 35.9
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.8e-129 467.6 842 37.3
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.8e-129 467.6 852 35.3
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 3.1e-129 466.8 830 36.4
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 9.1e-129 465.3 858 35.5
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 9.1e-129 465.3 851 35.4
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 1.6e-128 464.5 852 35.4
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 4.5e-128 463.0 852 35.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 5.9e-128 462.6 852 34.9
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.7e-128 462.2 851 35.7
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 2.9e-127 460.3 853 35.6
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 3.8e-127 459.9 852 35.4
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 3.8e-127 459.9 861 36.4
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 1.1e-126 458.4 871 34.9
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.9e-126 457.6 868 36.8
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 9.4e-126 455.3 850 35.1
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.6e-125 454.5 846 35.7
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 2.7e-125 453.8 858 35.8
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.6e-125 453.4 864 36.1
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 3.6e-125 453.4 815 35.6
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 8.0e-125 452.2 836 34.7
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 8.0e-125 452.2 872 34.3
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 8.0e-125 452.2 847 34.8
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.0e-124 451.8 867 33.9
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.0e-124 451.8 857 33.6
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 1.4e-124 451.4 823 36.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.8e-124 451.1 848 34.0
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 3.0e-124 450.3 845 35.7
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 5.2e-124 449.5 863 34.1
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 2.6e-123 447.2 850 34.7
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 2.6e-123 447.2 849 35.3
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.6e-123 447.2 841 33.7
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 3.4e-123 446.8 862 33.9
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 4.4e-123 446.4 859 33.9
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.7e-122 444.5 849 34.9
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 2.2e-122 444.1 823 36.5
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 2.8e-122 443.7 856 35.3
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.7e-122 443.4 823 34.6
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 3.7e-122 443.4 828 35.5
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 3.7e-122 443.4 826 35.4
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 3.7e-122 443.4 826 35.4
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 3.7e-122 443.4 856 34.0
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 6.3e-122 442.6 869 34.6
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.3e-122 442.2 864 34.5
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.1e-121 441.8 832 35.1
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.8e-121 441.0 857 33.8
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.8e-121 441.0 866 35.1
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.8e-121 441.0 850 35.3
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 2.4e-121 440.7 835 34.1
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 3.1e-121 440.3 867 34.7
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 2.0e-120 437.6 847 33.9
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 4.5e-120 436.4 842 34.1
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 7.7e-120 435.6 842 35.2
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.3e-119 434.9 864 34.0
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-119 434.9 883 33.9
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.3e-119 434.9 842 35.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.3e-119 434.1 850 34.1
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 2.9e-119 433.7 842 34.8
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 2.9e-119 433.7 851 34.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 6.6e-119 432.6 847 33.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.1e-118 431.8 850 34.0
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.1e-118 431.8 829 35.1
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 5.6e-118 429.5 839 35.2
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 9.5e-118 428.7 896 33.7
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 6.1e-117 426.0 828 35.3
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 8.0e-117 425.6 839 34.9
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 1.0e-116 425.2 838 34.8
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 1.4e-116 424.9 859 34.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.3e-116 424.1 839 33.4
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 3.0e-116 423.7 841 34.0
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-115 421.8 827 34.6
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 5.7e-115 419.5 844 34.2
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 1.7e-114 417.9 823 35.0
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.4e-113 414.1 927 32.9
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.4e-113 414.1 827 32.6
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 4.6e-112 409.8 854 32.8
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 1.0e-111 408.7 812 34.5
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 2.1e-109 401.0 845 34.2
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 4.7e-109 399.8 851 32.9
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 6.2e-109 399.4 904 32.5
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.0e-108 398.7 850 34.1
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 1.4e-108 398.3 832 34.1
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 8.9e-108 395.6 817 33.8
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 5.8e-107 392.9 840 33.6
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.9e-94 351.3 694 36.0
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 9.5e-94 349.0 700 34.0
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.4e-92 345.1 704 34.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.0e-92 343.6 586 37.4
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.0e-92 343.6 586 37.4
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 4.0e-92 343.6 773 32.9
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.6e-88 331.6 652 35.0
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 1.6e-77 295.0 806 30.4
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.1e-77 292.7 727 31.5
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.4e-73 281.2 662 31.9
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.3e-70 270.8 725 30.3
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.1e-65 255.8 1025 26.6
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.4e-65 255.4 368 41.0
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.1e-62 245.7 266 48.1
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.3e-62 244.2 651 31.3
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.1e-60 239.2 621 29.8
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 4.0e-60 237.3 263 47.1
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.2e-59 235.7 642 30.1
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 6.0e-56 223.4 547 31.4
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.0e-55 222.6 585 30.4
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 8.7e-55 219.5 595 29.1
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.1e-52 212.6 557 29.8
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.1e-52 212.6 556 30.9
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.0e-50 203.8 537 30.4
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 8.5e-50 203.0 473 32.6
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-48 199.1 574 29.4
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 6.1e-48 196.8 570 29.6
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 9.7e-46 189.5 186 51.1
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.6e-45 188.7 511 30.1
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.6e-43 181.4 233 41.6
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.5e-42 176.4 403 31.0
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.0e-39 167.9 388 29.4
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.8e-29 134.0 252 34.1
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 4.5e-27 127.5 161 41.6
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 2.2e-26 125.2 146 42.5
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.5e-25 122.5 485 27.8
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 1.5e-25 122.5 485 27.8
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 5.5e-25 120.6 278 31.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 6.7e-23 113.6 284 30.3
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 2.7e-19 101.7 139 40.3
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-17 95.5 235 28.5
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 4.2e-17 94.4 126 40.5
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 7.2e-17 93.6 96 46.9
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 7.2e-17 93.6 510 24.5
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.1e-16 92.0 239 28.9
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 1.8e-12 79.0 110 39.1
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 7.0e-12 77.0 78 50.0
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 2.0e-11 75.5 288 26.0
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.3e-10 72.8 63 57.1
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.7e-08 65.1 107 29.9


User provided reference genes

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