Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO164G0021 Selaginella moellendorffii HOM05D003562 ORTHO05D004074 2.3e-122 442.2 216 100.0
ATR0763G113 Amborella trichopoda HOM05D003562 ORTHO05D004074 1.6e-35 153.7 219 36.5
Cfa010886 Carpinus fangiana HOM05D003562 ORTHO05D004074 2.2e-32 143.3 208 38.5
HanXRQChr12g0359541 Helianthus annuus HOM05D003562 ORTHO05D004074 2.9e-32 142.9 221 39.4
RhsimUnG0111400 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.1e-31 141.0 218 35.8
DCAR_022850 Daucus carota HOM05D003562 ORTHO05D004074 1.4e-31 140.6 203 38.4
Duzib128G0310 Durio zibethinus HOM05D003562 ORTHO05D004074 1.4e-31 140.6 226 38.9
Rhsim07G0066600 Rhododendron simsii HOM05D003562 ORTHO05D004074 1.4e-31 140.6 218 35.8
arahy.Tifrunner.gnm1.ann1.T72YSL Arachis hypogaea HOM05D003562 ORTHO05D004074 1.9e-31 140.2 197 37.1
Duzib114G0768 Durio zibethinus HOM05D003562 ORTHO05D004074 1.9e-31 140.2 226 37.6
Dinv09273 Davidia involucrata HOM05D003562 ORTHO05D004074 2.4e-31 139.8 206 37.9
Haze_03073 Corylus avellana HOM05D003562 ORTHO05D004074 3.2e-31 139.4 218 37.2
Mapoly0008s0158 Marchantia polymorpha HOM05D003562 ORTHO05D004074 4.2e-31 139.0 160 45.0
Gohir.D10G190700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 5.4e-31 138.7 226 37.6
Gorai.011G213800 Gossypium raimondii HOM05D003562 ORTHO05D004074 5.4e-31 138.7 226 37.6
Lalb_Chr03g0032801 Lupinus albus HOM05D003562 ORTHO05D004074 5.4e-31 138.7 201 39.8
CiPaw.13G012700 Carya illinoinensis HOM05D003562 ORTHO05D004074 7.1e-31 138.3 209 38.8
CSS0045780 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 2.1e-30 136.7 221 34.8
CSS0041933 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 4.6e-30 135.6 218 34.9
Thhalv10014282m.g Eutrema salsugineum HOM05D003562 ORTHO05D004074 4.6e-30 135.6 218 37.6
CSS0019906 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 6.0e-30 135.2 221 35.7
Manes.04G160200 Manihot esculenta HOM05D003562 ORTHO05D004074 7.9e-30 134.8 207 36.7
Pp3c12_13390 Physcomitrium patens HOM05D003562 ORTHO05D004074 7.9e-30 134.8 165 44.8
THA.LOC104807160 Tarenaya hassleriana HOM05D003562 ORTHO05D004074 7.9e-30 134.8 221 36.2
CiPaw.14G007100 Carya illinoinensis HOM05D003562 ORTHO05D004074 1.0e-29 134.4 208 36.1
COL.COLO4_07204 Corchorus olitorius HOM05D003562 ORTHO05D004074 1.0e-29 134.4 226 36.7
vmacro13748 Vaccinium macrocarpon HOM05D003562 ORTHO05D004074 1.0e-29 134.4 218 35.3
Migut.N01839 Erythranthe guttata HOM05D003562 ORTHO05D004074 1.8e-29 133.7 221 38.0
Pp3c25_14670 Physcomitrium patens HOM05D003562 ORTHO05D004074 1.8e-29 133.7 166 45.8
Glyma.06G083300 Glycine max HOM05D003562 ORTHO05D004074 2.3e-29 133.3 198 39.9
Aqoxy1G00347 Aquilegia oxysepala HOM05D003562 ORTHO05D004074 3.0e-29 132.9 218 35.8
Prupe.7G009600 Prunus persica HOM05D003562 ORTHO05D004074 3.0e-29 132.9 218 35.8
Atru.chr12.1362 Acer truncatum HOM05D003562 ORTHO05D004074 3.9e-29 132.5 207 36.2
Glyma.11G154000 Glycine max HOM05D003562 ORTHO05D004074 3.9e-29 132.5 198 39.4
Lsat_1_v5_gn_6_15520 Lactuca sativa HOM05D003562 ORTHO05D004074 3.9e-29 132.5 218 35.8
Thecc.10G162500 Theobroma cacao HOM05D003562 ORTHO05D004074 3.9e-29 132.5 226 36.3
MD02G1270100 Malus domestica HOM05D003562 ORTHO05D004074 5.1e-29 132.1 218 35.3
Carub.0008s2023 Capsella rubella HOM05D003562 ORTHO05D004074 6.7e-29 131.7 218 37.2
Hma1.2p1_1396F.1_g280630 Hydrangea macrophylla HOM05D003562 ORTHO05D004074 6.7e-29 131.7 212 35.4
Gohir.D10G190150 Gossypium hirsutum HOM05D003562 ORTHO05D004074 8.7e-29 131.3 226 36.3
Gohir.D10G190200 Gossypium hirsutum HOM05D003562 ORTHO05D004074 8.7e-29 131.3 226 36.3
MD06G1045900 Malus domestica HOM05D003562 ORTHO05D004074 8.7e-29 131.3 208 36.5
PSO384G3387 Papaver somniferum HOM05D003562 ORTHO05D004074 8.7e-29 131.3 219 36.1
AL8G36050 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 1.1e-28 131.0 218 37.6
Nn2g14890 Nelumbo nucifera HOM05D003562 ORTHO05D004074 1.1e-28 131.0 218 37.6
CARHR273020 Cardamine hirsuta HOM05D003562 ORTHO05D004074 1.5e-28 130.6 219 37.4
Cpa.g.sc30.42 Carica papaya HOM05D003562 ORTHO05D004074 1.5e-28 130.6 221 36.7
GSVIVG01037424001 Vitis vinifera HOM05D003562 ORTHO05D004074 1.5e-28 130.6 215 37.7
PGR142G2845 Punica granatum HOM05D003562 ORTHO05D004074 1.9e-28 130.2 221 38.5
Sp6g21260 Schrenkiella parvula HOM05D003562 ORTHO05D004074 1.9e-28 130.2 218 35.8
Cc01_g07880 Coffea canephora HOM05D003562 ORTHO05D004074 2.5e-28 129.8 218 34.9
TWI32G0119 Tripterygium wilfordii HOM05D003562 ORTHO05D004074 2.5e-28 129.8 198 38.4
TAR636G2713 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.3e-28 129.4 217 35.5
VMungo1080G1790 Vigna mungo HOM05D003562 ORTHO05D004074 3.3e-28 129.4 198 38.4
Phvul.005G028600 Phaseolus vulgaris HOM05D003562 ORTHO05D004074 4.3e-28 129.0 198 37.9
BcaB05g22520 Brassica carinata HOM05D003562 ORTHO05D004074 5.6e-28 128.6 218 35.8
C02p12410 Brassica napus HOM05D003562 ORTHO05D004074 5.6e-28 128.6 218 35.8
TPR.G17800 Trifolium pratense HOM05D003562 ORTHO05D004074 7.4e-28 128.3 202 37.6
Cc00_g22970 Coffea canephora HOM05D003562 ORTHO05D004074 9.6e-28 127.9 218 34.4
BcaC04g19758 Brassica carinata HOM05D003562 ORTHO05D004074 1.3e-27 127.5 218 35.3
C09p51940 Brassica napus HOM05D003562 ORTHO05D004074 1.3e-27 127.5 218 35.3
BolC9t58057H Brassica oleracea HOM05D003562 ORTHO05D004074 1.3e-27 127.5 218 35.3
Potri.001G026700 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.3e-27 127.5 219 36.5
SGA_v2.0_scaffold71G23983 Striga asiatica HOM05D003562 ORTHO05D004074 1.3e-27 127.5 217 36.9
Ca_27897_v3 Cicer arietinum L. HOM05D003562 ORTHO05D004074 1.6e-27 127.1 198 36.4
QL04p014579 Quercus lobata HOM05D003562 ORTHO05D004074 1.6e-27 127.1 208 37.0
QL04p014940 Quercus lobata HOM05D003562 ORTHO05D004074 1.6e-27 127.1 208 37.0
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.1e-27 126.7 218 35.3
CAN.G1074.6 Capsicum annuum HOM05D003562 ORTHO05D004074 2.1e-27 126.7 218 34.4
AT5G59560 Arabidopsis thaliana HOM05D003562 ORTHO05D004074 2.8e-27 126.3 218 35.8
TAR636G0244 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.6e-27 125.9 218 36.2
Nitab4.5_0000320g0220 Nicotiana tabacum HOM05D003562 ORTHO05D004074 4.8e-27 125.6 218 34.4
Psat5g217800 Pisum sativum HOM05D003562 ORTHO05D004074 6.2e-27 125.2 207 35.3
Sc10g0004400 Simmondsia chinensis HOM05D003562 ORTHO05D004074 6.2e-27 125.2 214 36.0
BcaC03g14002 Brassica carinata HOM05D003562 ORTHO05D004074 8.1e-27 124.8 218 35.3
BolC2t07341H Brassica oleracea HOM05D003562 ORTHO05D004074 8.1e-27 124.8 218 35.3
Peaxi162Scf00025g00152 Petunia axillaris HOM05D003562 ORTHO05D004074 8.1e-27 124.8 221 35.3
SHI01272 Sapria himalayana HOM05D003562 ORTHO05D004074 8.1e-27 124.8 219 35.2
A10p16750 Brassica napus HOM05D003562 ORTHO05D004074 1.1e-26 124.4 218 34.4
Ah.04g155210 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.8e-26 123.6 218 37.6
Lj3g0004154 Lotus japonicus HOM05D003562 ORTHO05D004074 1.8e-26 123.6 202 36.6
BcaB08g36248 Brassica carinata HOM05D003562 ORTHO05D004074 2.4e-26 123.2 218 33.9
Gohir.A10G183700 Gossypium hirsutum HOM05D003562 ORTHO05D004074 2.4e-26 123.2 170 41.2
Potri.003G198000 Populus trichocarpa HOM05D003562 ORTHO05D004074 2.4e-26 123.2 211 37.0
TAR636G2742 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.4e-26 123.2 218 35.3
Nitab4.5_0010864g0010 Nicotiana tabacum HOM05D003562 ORTHO05D004074 3.1e-26 122.9 197 35.0
TAR636G1695 Trochodendron aralioides HOM05D003562 ORTHO05D004074 3.1e-26 122.9 218 35.8
Ah.04g155220 Amaranthus hybridus HOM05D003562 ORTHO05D004074 4.0e-26 122.5 218 36.7
BraA10t43756Z Brassica rapa HOM05D003562 ORTHO05D004074 4.0e-26 122.5 223 33.6
MSTRG.16988 Avicennia marina HOM05D003562 ORTHO05D004074 5.3e-26 122.1 219 32.4
ClCG01G007760 Citrullus lanatus HOM05D003562 ORTHO05D004074 5.3e-26 122.1 219 32.9
CANSAT35G1715 Cannabis sativa HOM05D003562 ORTHO05D004074 6.9e-26 121.7 198 35.9
Sed0007359 Sechium edule HOM05D003562 ORTHO05D004074 9.0e-26 121.3 208 33.7
A02p07060 Brassica napus HOM05D003562 ORTHO05D004074 1.2e-25 120.9 218 33.9
BraA02t05786Z Brassica rapa HOM05D003562 ORTHO05D004074 1.2e-25 120.9 218 33.9
CDE12G0865 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 1.2e-25 120.9 210 37.1
HPP92_000641 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.2e-25 120.9 209 35.9
PSO339G2283 Papaver somniferum HOM05D003562 ORTHO05D004074 1.5e-25 120.6 219 35.2
Potri.T125306 Populus trichocarpa HOM05D003562 ORTHO05D004074 1.5e-25 120.6 211 36.0
MELO3C005120.2 Cucumis melo HOM05D003562 ORTHO05D004074 2.0e-25 120.2 219 33.3
CsaV3_5G024840 Cucumis sativus L. HOM05D003562 ORTHO05D004074 2.0e-25 120.2 219 33.3
Eucgr.G03239 Eucalyptus grandis HOM05D003562 ORTHO05D004074 2.6e-25 119.8 218 35.3
Solyc11g005260.2 Solanum lycopersicum HOM05D003562 ORTHO05D004074 2.6e-25 119.8 236 33.5
Sopen11g001270 Solanum pennellii HOM05D003562 ORTHO05D004074 2.6e-25 119.8 236 33.5
TAR636G1892 Trochodendron aralioides HOM05D003562 ORTHO05D004074 2.6e-25 119.8 197 37.6
BcaB07g34157 Brassica carinata HOM05D003562 ORTHO05D004074 3.4e-25 119.4 223 35.4
ECA233G2618 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-25 119.4 211 36.5
SalBow7G2199 Salvia bowleyana HOM05D003562 ORTHO05D004074 3.4e-25 119.4 218 33.9
Medtr3g017470 Medicago truncatula HOM05D003562 ORTHO05D004074 4.5e-25 119.0 207 35.3
Sabra03G0147400 Salix brachista HOM05D003562 ORTHO05D004074 4.5e-25 119.0 211 35.1
Ciclev10029023m.g Citrus clementina HOM05D003562 ORTHO05D004074 9.9e-25 117.9 213 35.2
Oeu015695.4 Olea europaea HOM05D003562 ORTHO05D004074 1.3e-24 117.5 192 35.4
FAN18G1494 Fragaria x ananassa HOM05D003562 ORTHO05D004074 2.2e-24 116.7 218 33.5
Lj8P275T68 Lonicera japonica HOM05D003562 ORTHO05D004074 2.2e-24 116.7 217 32.7
AUR62037195 Chenopodium quinoa HOM05D003562 ORTHO05D004074 2.9e-24 116.3 218 37.2
Os05g0118000 Oryza sativa ssp. japonica HOM05D003562 ORTHO05D004074 3.8e-24 115.9 222 36.0
FvH4_5g25300 Fragaria vesca HOM05D003562 ORTHO05D004074 4.9e-24 115.5 218 33.0
FAN13G2751 Fragaria x ananassa HOM05D003562 ORTHO05D004074 6.4e-24 115.2 218 33.0
Zm00001eb188200 Zea mays HOM05D003562 ORTHO05D004074 6.4e-24 115.2 199 37.2
Actinidia06246 Actinidia chinensis HOM05D003562 ORTHO05D004074 8.4e-24 114.8 177 35.6
Peaxi162Scf00128g00115 Petunia axillaris HOM05D003562 ORTHO05D004074 5.5e-23 112.1 214 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1627 Anthoceros agrestis HOM05D003562 ORTHO05D004074 4.6e-22 109.0 164 42.1
unitig_747.g21707 Utricularia gibba HOM05D003562 ORTHO05D004074 6.0e-22 108.6 213 32.9
CDE01G0515 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 1.3e-21 107.5 158 39.2
unitig_26.g9509 Utricularia gibba HOM05D003562 ORTHO05D004074 1.3e-21 107.5 169 35.5
CSS0043492 Camellia sinensis var. sinensis HOM05D003562 ORTHO05D004074 1.1e-20 104.4 195 32.8
FAN04G2150 Fragaria x ananassa HOM05D003562 ORTHO05D004074 1.9e-20 103.6 212 32.1
HPP92_000706 Vanilla planifolia HOM05D003562 ORTHO05D004074 1.9e-20 103.6 168 35.1
CDE01G0328 Ceratophyllum demersum HOM05D003562 ORTHO05D004074 9.6e-20 101.3 217 34.6
HanXRQChr06g0173441 Helianthus annuus HOM05D003562 ORTHO05D004074 1.6e-19 100.5 140 41.4
CANSAT11G2219 Cannabis sativa HOM05D003562 ORTHO05D004074 2.1e-19 100.1 218 33.9
PGSC0003DMG400006036 Solanum tuberosum HOM05D003562 ORTHO05D004074 8.1e-19 98.2 174 33.9
Dinv02658 Davidia involucrata HOM05D003562 ORTHO05D004074 1.4e-18 97.4 205 29.3
Actinidia10167 Actinidia chinensis HOM05D003562 ORTHO05D004074 4.0e-18 95.9 112 42.0
TAR636G1190 Trochodendron aralioides HOM05D003562 ORTHO05D004074 5.3e-18 95.5 215 30.7
vmacro18374 Vaccinium macrocarpon HOM05D000884 ORTHO05D002127 9.0e-18 94.7 212 28.8
Rhsim08G0039700 Rhododendron simsii HOM05D000884 ORTHO05D002127 1.5e-17 94.0 215 27.9
ECA247G0148 Erigeron canadensis HOM05D003562 ORTHO05D004074 2.6e-17 93.2 151 34.4
CANSAT01G2732 Cannabis sativa HOM05D003562 ORTHO05D004074 3.4e-17 92.8 196 31.1
PRCOL_00000242 Prasinoderma coloniale HOM05D003562 ORTHO05D004074 3.4e-17 92.8 185 37.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 5.8e-17 92.0 124 45.2
CANSAT11G2347 Cannabis sativa HOM05D003562 ORTHO05D004074 1.0e-16 91.3 170 34.1
Cre10.g423700 Chlamydomonas reinhardtii HOM05D003562 ORTHO05D004074 3.8e-16 89.4 265 29.4
Sopen11g001180 Solanum pennellii HOM05D003562 ORTHO05D004074 2.5e-15 86.7 222 28.8
Thecc.07G145100 Theobroma cacao HOM05D003562 ORTHO05D004074 4.6e-14 82.4 116 37.9
Thecc.07G145200 Theobroma cacao HOM05D003562 ORTHO05D004074 1.3e-13 80.9 166 31.3
PGSC0003DMG400039163 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.8e-13 80.5 161 31.7
MCO01G099 Micromonas commoda HOM05D003562 ORTHO05D004074 3.9e-13 79.3 214 28.5
MCO01G583 Micromonas commoda HOM05D003562 ORTHO05D004074 3.9e-13 79.3 214 28.5
MBI18_g45417_MAGBIO Magnolia biondii HOM05D003562 ORTHO05D004074 8.7e-13 78.2 166 33.1
Solyc11g005180.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 8.7e-13 78.2 165 32.1
Solyc11g005240.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.1e-12 77.8 165 30.3
Sopen11g001250 Solanum pennellii HOM05D003562 ORTHO05D004074 1.1e-12 77.8 216 27.3
CANSAT11G1241 Cannabis sativa HOM05D003562 ORTHO05D004074 1.9e-12 77.0 150 35.3
QL06p011807 Quercus lobata HOM05D003562 ORTHO05D004074 1.9e-12 77.0 149 31.5
SEGI_35747 Sequoiadendron giganteum HOM05D003562 ORTHO05D004074 2.5e-12 76.6 167 28.1
Solyc11g005230.1 Solanum lycopersicum HOM05D003562 ORTHO05D004074 1.6e-11 73.9 165 31.5
Sopen11g001240 Solanum pennellii HOM05D003562 ORTHO05D004074 1.6e-11 73.9 165 31.5
Peaxi162Scf00125g00231 Petunia axillaris HOM05D003562 ORTHO05D004074 2.1e-11 73.6 195 28.7
PGSC0003DMG400006062 Solanum tuberosum HOM05D003562 ORTHO05D004074 2.1e-11 73.6 167 29.3
HPP92_020694 Vanilla planifolia HOM05D003562 ORTHO05D004074 4.8e-11 72.4 95 37.9
HPP92_020796 Vanilla planifolia HOM05D003562 ORTHO05D004074 4.8e-11 72.4 95 37.9
PGSC0003DMG400042505 Solanum tuberosum HOM05D003562 ORTHO05D004074 1.4e-10 70.9 167 29.3
Ah.10g030580 Amaranthus hybridus HOM05D003562 ORTHO05D004074 1.8e-10 70.5 218 28.9
Nitab4.5_0002396g0040 Nicotiana tabacum HOM05D003562 ORTHO05D004074 2.4e-10 70.1 166 32.5
BolC2t11811H Brassica oleracea HOM05D003562 ORTHO05D004074 3.1e-10 69.7 135 33.3
Lsat_1_v5_gn_3_4941 Lactuca sativa HOM05D003562 ORTHO05D004074 6.9e-10 68.6 134 29.9
CARHR266600 Cardamine hirsuta HOM05D003562 ORTHO05D004074 1.7e-08 63.9 134 29.9
Lsat_1_v5_gn_4_44700 Lactuca sativa HOM05D003562 ORTHO05D004074 2.9e-08 63.2 131 30.5
CDE12G0883 Ceratophyllum demersum HOM05D000824 ORTHO05D002221 1.4e-07 60.8 124 32.3
Solyc06g005930.3 Solanum lycopersicum HOM05D003562 ORTHO05D004074 5.5e-07 58.9 97 32.0
BraA02t08793Z Brassica rapa HOM05D003562 ORTHO05D004074 7.2e-07 58.5 132 32.6
AL6G10650 Arabidopsis lyrata HOM05D003562 ORTHO05D004074 2.7e-06 56.6 50 50.0
BolC2t11816H Brassica oleracea HOM05D003562 ORTHO05D004074 2.7e-06 56.6 129 27.9


User provided reference genes

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