Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.9e-51 204.1 100 100.0
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.1e-46 188.7 100 93.0
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-39 166.4 100 84.0
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 5.4e-34 147.5 112 67.9
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 3.3e-31 138.3 112 62.5
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.6e-31 137.5 84 81.0
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.3e-31 137.1 84 79.8
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.2e-30 134.0 84 79.8
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 5.3e-29 131.0 109 61.5
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.3e-29 131.0 84 77.4
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-27 125.9 69 88.4
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-26 123.2 69 87.0
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-26 123.2 84 75.0
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 4.2e-26 121.3 112 56.2
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 9.3e-26 120.2 109 54.1
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.3e-26 120.2 111 56.8
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 9.3e-26 120.2 109 56.0
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 3.5e-25 118.2 109 55.0
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.5e-25 118.2 100 65.0
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 6.0e-25 117.5 107 56.1
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.0e-24 116.7 111 53.2
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 2.3e-24 115.5 111 52.3
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 3.0e-24 115.2 111 54.1
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 3.0e-24 115.2 111 53.2
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 3.9e-24 114.8 110 53.6
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 3.9e-24 114.8 109 53.2
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 5.1e-24 114.4 110 51.8
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 5.1e-24 114.4 111 53.2
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 5.1e-24 114.4 108 52.8
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 1.1e-23 113.2 111 51.4
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 1.5e-23 112.8 110 52.7
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.5e-23 112.8 111 52.3
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 1.5e-23 112.8 108 51.9
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.5e-23 112.8 110 51.8
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 1.9e-23 112.5 111 52.3
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 1.9e-23 112.5 108 52.8
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 2.5e-23 112.1 110 51.8
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 3.3e-23 111.7 111 53.2
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 3.3e-23 111.7 110 53.6
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 4.3e-23 111.3 109 52.3
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 4.3e-23 111.3 112 50.9
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 4.3e-23 111.3 112 50.9
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 4.3e-23 111.3 109 52.3
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 4.3e-23 111.3 111 53.2
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 5.6e-23 110.9 108 54.6
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 7.3e-23 110.5 110 51.8
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 9.6e-23 110.2 110 51.8
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 9.6e-23 110.2 111 53.2
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 9.6e-23 110.2 112 50.9
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 9.6e-23 110.2 111 48.6
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 1.3e-22 109.8 108 52.8
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.3e-22 109.8 109 51.4
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 1.3e-22 109.8 111 51.4
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 1.3e-22 109.8 91 56.0
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 1.6e-22 109.4 109 50.5
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 1.6e-22 109.4 108 53.7
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 2.1e-22 109.0 111 50.5
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 2.8e-22 108.6 111 49.5
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 4.8e-22 107.8 92 56.5
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 4.8e-22 107.8 110 50.0
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 6.2e-22 107.5 92 56.5
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 8.1e-22 107.1 92 55.4
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 8.1e-22 107.1 100 53.0
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 8.1e-22 107.1 111 54.1
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 1.4e-21 106.3 92 55.4
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.8e-21 105.9 90 55.6
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 3.1e-21 105.1 110 49.1
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 3.1e-21 105.1 99 49.5
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 3.1e-21 105.1 110 50.9
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.1e-21 105.1 110 50.9
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.1e-21 105.1 110 50.9
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 3.1e-21 105.1 110 50.9
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.1e-21 105.1 92 54.3
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 4.0e-21 104.8 91 53.8
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.0e-21 104.8 91 57.1
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 4.0e-21 104.8 92 54.3
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 4.0e-21 104.8 108 50.0
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 5.3e-21 104.4 110 49.1
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 6.9e-21 104.0 108 47.2
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 9.0e-21 103.6 110 48.2
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 9.0e-21 103.6 110 50.0
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 9.0e-21 103.6 110 50.9
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 1.2e-20 103.2 91 52.7
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 1.2e-20 103.2 110 50.9
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.2e-20 103.2 107 48.6
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.5e-20 102.8 111 50.5
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 2.6e-20 102.1 110 45.5
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 2.6e-20 102.1 86 52.3
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 2.6e-20 102.1 108 46.3
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 3.4e-20 101.7 93 53.8
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.4e-20 101.7 75 61.3
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 3.4e-20 101.7 111 48.6
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 3.4e-20 101.7 107 51.4
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 4.5e-20 101.3 111 45.0
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 4.5e-20 101.3 111 45.9
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 5.8e-20 100.9 111 47.7
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 5.8e-20 100.9 110 48.2
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 7.6e-20 100.5 111 45.0
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 7.6e-20 100.5 118 48.3
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 1.3e-19 99.8 85 54.1
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.7e-19 99.4 100 50.0
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 1.7e-19 99.4 110 47.3
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 1.7e-19 99.4 111 49.5
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 2.2e-19 99.0 75 60.0
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.2e-19 99.0 87 52.9
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 2.9e-19 98.6 107 49.5
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.8e-19 98.2 111 44.1
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 4.9e-19 97.8 87 54.0
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 4.9e-19 97.8 87 54.0
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 4.9e-19 97.8 104 50.0
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 8.4e-19 97.1 107 48.6
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 8.4e-19 97.1 111 46.8
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 8.4e-19 97.1 110 46.4
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 8.4e-19 97.1 91 47.3
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.1e-18 96.7 75 58.7
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 3.2e-18 95.1 75 60.0
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.2e-18 94.7 75 58.7
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 5.4e-18 94.4 75 58.7
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 7.1e-18 94.0 85 55.3
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 7.1e-18 94.0 85 55.3
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 7.1e-18 94.0 111 45.9
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 9.3e-18 93.6 75 58.7
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 9.3e-18 93.6 75 58.7
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.2e-17 93.2 111 42.3
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.6e-17 92.8 75 60.0
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 1.6e-17 92.8 75 58.7
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-17 92.8 108 48.1
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 2.1e-17 92.4 75 57.3
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.7e-17 92.0 81 50.6
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 3.5e-17 91.7 85 51.8
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 4.6e-17 91.3 111 47.7
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 7.9e-17 90.5 75 56.0
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 7.9e-17 90.5 75 56.0
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 7.9e-17 90.5 75 56.0
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 7.9e-17 90.5 75 56.0
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 7.9e-17 90.5 75 56.0
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.0e-16 90.1 110 45.5
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.8e-16 89.4 107 45.8
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.3e-16 89.0 50 90.0
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.1e-15 86.7 46 91.3
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 1.5e-15 86.3 112 42.0
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 3.3e-15 85.1 106 42.5
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.6e-15 84.3 47 87.2
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.3e-14 83.2 87 51.7
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.1e-14 80.5 47 87.2
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.8e-13 79.3 47 85.1
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.1e-13 78.6 46 84.8
Nitab4.5_0005797g0050 Nicotiana tabacum HOM05D003501 ORTHO05D004388 4.5e-12 74.7 56 60.7
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 2.9e-11 72.0 108 38.0
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.2e-10 68.6 87 47.1
ATR0097G041 Amborella trichopoda HOM05D003501 ORTHO05D004388 5.5e-10 67.8 54 59.3
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 9.3e-10 67.0 63 47.6
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 9.3e-10 67.0 106 37.7
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 1.6e-09 66.2 87 46.0
arahy.Tifrunner.gnm1.ann1.3N5Q80 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.7e-07 57.8 54 50.0
CARHR191430 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.6e-06 56.2 46 54.3


User provided reference genes

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