Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 6.6e-134 480.7 243 100.0
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 4.8e-44 182.2 249 43.8
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 7.0e-43 178.3 249 44.2
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 2.6e-42 176.4 250 44.0
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 3.5e-42 176.0 251 43.4
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 3.5e-42 176.0 250 44.0
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 4.5e-42 175.6 251 43.4
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 7.7e-42 174.9 256 43.8
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 7.7e-42 174.9 247 43.3
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.7e-41 173.7 251 43.4
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.7e-41 173.7 249 43.4
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.7e-41 173.7 251 44.2
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.2e-41 173.3 251 43.4
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 2.2e-41 173.3 251 42.6
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.9e-41 172.9 250 43.6
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 8.5e-41 171.4 254 43.3
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 8.5e-41 171.4 250 43.2
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.5e-40 170.6 253 42.7
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 1.9e-40 170.2 273 40.7
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.5e-40 169.9 250 44.0
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 3.2e-40 169.5 250 40.8
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 3.2e-40 169.5 251 41.4
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 3.2e-40 169.5 251 42.2
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 3.2e-40 169.5 253 42.3
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 4.2e-40 169.1 250 42.8
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 5.5e-40 168.7 249 43.0
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 5.5e-40 168.7 250 42.8
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 7.2e-40 168.3 257 42.4
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 7.2e-40 168.3 249 42.6
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 7.2e-40 168.3 275 42.2
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.4e-40 167.9 250 43.6
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 9.4e-40 167.9 250 43.6
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 9.4e-40 167.9 253 42.3
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 9.4e-40 167.9 253 41.5
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 9.4e-40 167.9 248 41.9
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.2e-39 167.5 250 43.2
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 1.2e-39 167.5 249 42.6
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.2e-39 167.5 256 42.2
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.6e-39 167.2 253 42.3
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.7e-39 166.4 253 41.9
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 2.7e-39 166.4 277 39.7
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 3.6e-39 166.0 253 42.3
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 3.6e-39 166.0 253 41.5
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 3.6e-39 166.0 255 40.0
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 4.7e-39 165.6 251 43.0
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 6.1e-39 165.2 253 41.5
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 6.1e-39 165.2 247 41.7
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 6.1e-39 165.2 251 41.4
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.0e-39 164.9 251 42.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 8.0e-39 164.9 254 41.7
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 8.0e-39 164.9 253 41.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 8.0e-39 164.9 254 41.7
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 8.0e-39 164.9 259 41.3
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-38 164.5 257 40.9
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.0e-38 164.5 249 42.6
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 1.4e-38 164.1 253 40.3
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 1.8e-38 163.7 250 42.4
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 4.0e-38 162.5 253 40.7
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 5.2e-38 162.2 252 41.3
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 6.8e-38 161.8 254 40.9
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.8e-38 161.8 240 42.5
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 8.8e-38 161.4 250 39.6
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 8.8e-38 161.4 252 41.3
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.2e-37 161.0 257 40.1
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.2e-37 161.0 252 40.9
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.5e-37 160.6 248 41.9
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 1.5e-37 160.6 252 40.9
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 2.0e-37 160.2 259 39.4
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.6e-37 159.8 255 40.8
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 4.4e-37 159.1 250 39.2
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.4e-37 159.1 253 39.1
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 5.7e-37 158.7 248 39.9
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 5.7e-37 158.7 248 39.9
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 5.7e-37 158.7 259 39.4
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 7.5e-37 158.3 253 39.5
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.3e-36 157.5 282 38.3
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 3.7e-36 156.0 301 38.2
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.7e-36 156.0 254 40.2
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 6.3e-36 155.2 246 41.9
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.3e-36 154.8 283 38.5
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 8.3e-36 154.8 276 37.0
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.0e-35 151.8 251 39.0
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.2e-34 151.0 244 42.6
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 2.7e-34 149.8 248 38.7
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 4.5e-34 149.1 217 43.3
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 1.7e-33 147.1 250 36.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 2.2e-33 146.7 244 41.4
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 5.0e-33 145.6 245 40.4
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 5.0e-33 145.6 244 40.6
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 5.0e-33 145.6 244 40.2
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 6.5e-33 145.2 233 39.9
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 8.5e-33 144.8 244 41.4
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 8.5e-33 144.8 244 41.0
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.1e-32 144.4 245 40.8
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.5e-32 144.1 254 39.0
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.9e-32 143.7 244 41.0
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 1.9e-32 143.7 244 40.2
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 2.5e-32 143.3 245 40.0
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 2.5e-32 143.3 261 40.2
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 3.2e-32 142.9 241 39.4
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.2e-31 141.0 245 39.2
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 2.1e-31 140.2 224 42.0
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 4.7e-31 139.0 248 38.3
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 8.0e-31 138.3 218 40.4
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.8e-30 137.1 248 39.1
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 8.8e-30 134.8 270 37.4
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.4e-27 126.7 258 35.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 9.1e-27 124.8 245 36.3
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 6.6e-25 118.6 273 34.8
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 8.6e-25 118.2 188 42.0
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 4.2e-24 115.9 207 38.6
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 1.8e-22 110.5 188 40.4
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.8e-19 100.5 104 51.9
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 3.5e-18 96.3 245 29.8
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.7e-17 94.0 202 34.2
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 3.9e-17 92.8 109 46.8
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.1e-16 91.3 108 45.4
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.8e-15 86.7 117 42.7
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 3.6e-15 86.3 142 38.0
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 4.4e-13 79.3 140 37.1
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.9e-12 76.6 77 53.2
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-11 74.3 99 44.4
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 1.4e-11 74.3 104 45.2
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.9e-11 73.9 153 36.6
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 4.1e-11 72.8 191 34.0
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 9.2e-11 71.6 158 35.4
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-10 71.2 85 48.2
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.0e-10 68.9 72 48.6
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.0e-10 68.9 72 48.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-09 68.2 80 47.5
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.0e-09 68.2 80 47.5
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.3e-09 67.8 82 45.1
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.3e-09 67.0 72 47.2
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.9e-09 66.2 72 45.8
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.5e-08 63.5 86 41.9
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 1.1e-06 58.2 65 44.6


User provided reference genes

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