Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 6.8e-231 803.5 375 100.0
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 4.7e-224 780.8 375 98.1
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 2.4e-135 486.1 370 60.5
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 2.7e-134 482.6 374 60.7
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.1e-132 477.2 370 59.2
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 3.3e-132 475.7 367 59.4
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 4.3e-132 475.3 368 59.2
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 2.8e-131 472.6 372 58.6
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 3.6e-131 472.2 368 58.7
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.4e-130 470.3 367 58.3
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.3e-130 469.5 372 58.6
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 2.3e-130 469.5 368 59.2
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.3e-130 469.5 371 59.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 8.9e-130 467.6 370 58.4
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.2e-129 467.2 373 58.2
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.5e-129 466.8 369 59.1
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.5e-129 466.8 370 58.1
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 3.4e-129 465.7 370 58.1
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 5.8e-129 464.9 369 58.5
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 7.5e-129 464.5 371 57.7
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 9.8e-129 464.2 371 59.0
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 1.3e-128 463.8 371 56.6
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.7e-128 463.4 375 58.4
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 2.9e-128 462.6 377 56.8
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.7e-128 462.2 372 58.1
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 4.9e-128 461.8 371 58.2
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 4.9e-128 461.8 371 58.2
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 6.4e-128 461.5 372 57.0
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 6.4e-128 461.5 368 57.6
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 8.3e-128 461.1 370 57.6
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.4e-127 460.3 368 57.6
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.4e-127 460.3 378 57.7
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.4e-127 460.3 368 58.4
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.9e-127 459.9 396 55.3
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 2.4e-127 459.5 371 57.7
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 2.4e-127 459.5 361 59.3
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 3.2e-127 459.1 371 58.0
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 7.0e-127 458.0 372 58.1
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 9.2e-127 457.6 375 58.9
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 1.2e-126 457.2 368 57.3
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 1.2e-126 457.2 371 58.2
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.6e-126 456.8 370 57.6
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 2.0e-126 456.4 368 57.3
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 2.7e-126 456.1 371 56.9
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 2.7e-126 456.1 371 58.2
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 3.5e-126 455.7 370 57.3
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 3.5e-126 455.7 417 53.2
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-126 455.3 368 58.2
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 4.6e-126 455.3 371 57.7
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 4.6e-126 455.3 374 58.0
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 6.0e-126 454.9 372 57.8
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 6.0e-126 454.9 372 57.5
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 6.0e-126 454.9 372 57.5
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 7.8e-126 454.5 370 56.8
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 7.8e-126 454.5 368 56.5
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.0e-125 454.1 370 57.3
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 2.3e-125 453.0 375 56.0
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.3e-125 453.0 371 57.4
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 3.0e-125 452.6 369 56.1
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 3.9e-125 452.2 379 56.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 5.0e-125 451.8 379 55.1
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 6.6e-125 451.4 372 56.7
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 8.6e-125 451.1 374 56.1
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 8.6e-125 451.1 415 53.5
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.1e-124 450.7 368 56.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 1.5e-124 450.3 368 57.6
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.9e-124 449.9 371 57.1
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 2.5e-124 449.5 370 55.1
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.5e-124 449.5 350 59.7
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 3.3e-124 449.1 372 57.8
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 4.3e-124 448.7 373 56.8
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 4.3e-124 448.7 407 54.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 5.6e-124 448.4 378 56.1
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 9.5e-124 447.6 374 55.9
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.6e-123 446.8 372 57.0
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 2.1e-123 446.4 371 56.9
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 4.7e-123 445.3 378 55.6
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 8.0e-123 444.5 371 55.5
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 1.4e-122 443.7 379 55.7
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 1.8e-122 443.4 375 56.0
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 8.9e-122 441.0 376 55.9
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 1.2e-121 440.7 370 54.9
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.5e-121 440.3 371 56.9
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 4.4e-121 438.7 356 58.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 7.5e-121 438.0 366 56.6
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 7.5e-121 438.0 346 59.5
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 2.2e-120 436.4 372 57.0
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.1e-119 434.1 371 53.4
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 5.4e-119 431.8 377 55.2
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.1e-118 429.9 377 54.9
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.7e-118 429.5 368 57.9
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.9e-117 425.6 361 56.5
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 4.3e-116 422.2 378 55.0
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 2.8e-115 419.5 294 64.3
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 2.8e-115 419.5 338 58.0
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.9e-108 396.7 357 53.2
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 8.1e-107 391.3 371 52.0
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 3.1e-106 389.4 327 54.4
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.0e-106 389.0 327 55.0
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.2e-105 387.5 327 55.0
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 2.4e-103 379.8 438 46.1
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 4.6e-102 375.6 282 58.9
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 1.3e-99 367.5 379 49.1
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-95 352.8 370 49.5
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.5e-94 349.4 411 44.5
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.0e-94 348.6 361 49.6
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.8e-94 348.2 254 62.2
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.8e-91 339.7 367 48.5
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.5e-89 334.0 316 53.2
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 4.5e-89 332.4 322 51.9
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 2.9e-88 329.7 411 42.8
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 3.8e-88 329.3 245 64.9
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 4.9e-88 328.9 316 52.8
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 8.4e-88 328.2 313 51.8
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 2.1e-86 323.6 285 54.0
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 3.0e-85 319.7 276 55.4
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.7e-85 318.5 199 70.4
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.8e-83 312.4 353 45.3
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.9e-80 303.1 272 52.9
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 2.7e-78 296.6 200 65.0
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.9e-78 295.0 384 43.0
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.4e-74 283.5 404 39.9
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.7e-69 265.0 198 62.1
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.7e-68 261.5 198 60.6
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-67 260.8 166 69.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-66 257.7 200 59.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-66 257.7 332 46.1
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 3.1e-66 256.5 295 42.0
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-63 247.7 274 48.9
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 2.0e-60 237.3 214 54.2
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.0e-60 237.3 222 50.9
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 7.2e-55 218.8 165 60.6
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.4e-47 191.8 140 62.9
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.4e-47 191.8 140 62.9
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.4e-47 191.8 140 62.9
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-45 188.3 140 62.1
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 4.8e-43 179.5 115 67.8
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.2e-43 178.7 194 49.0
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-40 169.5 152 55.3
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-36 157.5 95 68.4
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.2e-30 138.3 108 57.4
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 2.3e-29 134.0 85 67.1
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-28 131.3 190 40.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.5e-23 114.0 84 60.7
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 4.2e-23 113.2 100 54.0
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-18 98.6 71 64.8
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-13 81.3 66 57.6
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 1.5e-12 78.2 69 53.6
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.5e-07 61.6 54 51.9
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 1.2e-06 58.5 47 53.2


User provided reference genes

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