Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 5.9e-121 437.6 224 100.0
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 4.3e-79 298.5 208 67.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.3e-64 250.4 208 56.7
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 3.9e-64 248.8 210 53.8
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 5.6e-63 245.0 199 53.8
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 1.2e-62 243.8 210 53.3
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 6.2e-62 241.5 207 53.1
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.4e-61 240.4 210 52.9
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 1.8e-61 240.0 207 52.7
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 1.8e-61 240.0 210 52.9
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 2.3e-61 239.6 207 53.1
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 3.1e-61 239.2 210 52.9
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 4.0e-61 238.8 210 52.4
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 8.9e-61 237.7 210 51.9
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 1.2e-60 237.3 210 51.4
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 2.6e-60 236.1 210 51.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 2.6e-60 236.1 210 52.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 4.4e-60 235.3 210 51.4
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 4.4e-60 235.3 211 51.7
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.4e-60 235.3 207 51.7
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 4.4e-60 235.3 207 51.7
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 5.8e-60 235.0 210 51.0
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 7.6e-60 234.6 211 51.7
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 9.9e-60 234.2 207 50.7
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 6.4e-59 231.5 213 51.6
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 8.4e-59 231.1 211 51.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 8.4e-59 231.1 212 50.5
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 8.4e-59 231.1 210 51.0
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 1.9e-58 229.9 212 49.5
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 2.4e-58 229.6 210 50.5
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 2.4e-58 229.6 207 50.7
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 4.1e-58 228.8 190 58.4
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 4.1e-58 228.8 210 49.0
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 5.4e-58 228.4 212 48.6
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 7.1e-58 228.0 212 49.5
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 1.2e-57 227.3 210 48.6
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 1.2e-57 227.3 207 49.3
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-57 226.5 211 50.2
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 2.7e-57 226.1 211 51.7
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 2.7e-57 226.1 210 48.6
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 4.6e-57 225.3 210 48.6
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 4.6e-57 225.3 211 49.8
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 6.0e-57 224.9 247 44.9
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 6.0e-57 224.9 247 44.9
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 6.0e-57 224.9 211 49.8
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 7.8e-57 224.6 210 49.5
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 7.8e-57 224.6 211 51.7
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.0e-56 224.2 210 51.9
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 1.0e-56 224.2 210 49.0
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 1.0e-56 224.2 209 52.6
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 1.3e-56 223.8 211 47.4
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.3e-56 223.8 241 45.2
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 2.3e-56 223.0 209 52.2
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 3.0e-56 222.6 210 48.6
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 3.0e-56 222.6 210 48.6
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 3.9e-56 222.2 212 48.6
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 3.9e-56 222.2 210 47.6
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 5.1e-56 221.9 210 48.6
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 6.6e-56 221.5 212 48.1
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 6.6e-56 221.5 210 47.6
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 8.6e-56 221.1 210 46.2
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 8.6e-56 221.1 212 47.6
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-55 220.7 210 48.1
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.5e-55 220.3 210 46.7
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.5e-55 220.3 219 47.5
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.9e-55 219.9 210 45.7
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 1.9e-55 219.9 212 49.5
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 1.9e-55 219.9 210 47.1
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 1.9e-55 219.9 211 51.2
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 2.5e-55 219.5 229 48.0
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 5.6e-55 218.4 210 49.0
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 9.6e-55 217.6 210 46.7
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 9.6e-55 217.6 210 49.5
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.6e-54 216.9 211 48.3
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 2.1e-54 216.5 210 45.2
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 2.1e-54 216.5 210 49.0
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 4.7e-54 215.3 212 50.0
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 8.1e-54 214.5 210 47.1
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.1e-53 214.2 210 47.6
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.4e-53 213.8 210 46.2
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.8e-53 213.4 230 45.2
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 1.8e-53 213.4 202 48.0
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 4.0e-53 212.2 210 46.2
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 4.0e-53 212.2 211 44.5
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 5.2e-53 211.8 210 47.6
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.8e-53 211.5 198 47.0
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.9e-53 211.1 209 48.3
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 2.0e-52 209.9 209 49.3
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 2.0e-52 209.9 207 47.3
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 3.4e-52 209.1 211 46.0
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 4.4e-52 208.8 210 46.7
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.8e-52 208.4 212 43.4
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 7.6e-52 208.0 210 44.8
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 7.6e-52 208.0 210 44.8
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 7.6e-52 208.0 210 44.8
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 1.3e-51 207.2 239 46.0
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.9e-50 203.4 192 47.9
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 5.4e-50 201.8 209 45.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 3.5e-49 199.1 212 44.8
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 3.5e-49 199.1 210 41.9
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 7.8e-49 198.0 252 40.5
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 2.3e-48 196.4 198 44.4
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 3.3e-47 192.6 210 45.2
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 4.3e-47 192.2 210 44.3
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 1.6e-46 190.3 204 45.1
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.8e-46 188.7 171 49.7
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 3.1e-45 186.0 207 42.0
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 4.0e-45 185.7 212 43.4
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 5.3e-45 185.3 165 53.3
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 5.3e-45 185.3 159 53.5
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-42 176.4 213 41.3
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.4e-42 176.4 210 41.0
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.6e-41 173.7 162 51.2
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 1.6e-41 173.7 162 51.2
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 2.7e-41 172.9 154 51.9
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.0e-40 171.0 165 48.5
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 3.0e-40 169.5 210 40.0
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 7.4e-39 164.9 169 47.3
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 7.4e-39 164.9 200 40.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 7.4e-39 164.9 203 38.9
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.1e-37 159.5 181 43.1
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 4.0e-37 159.1 185 43.2
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 9.0e-37 157.9 170 45.3
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.2e-36 157.5 137 51.1
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-36 154.8 180 41.7
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.3e-35 154.1 143 52.4
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.2e-35 153.3 159 45.9
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 8.4e-35 151.4 136 50.0
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-34 150.2 163 44.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.1e-33 146.7 141 47.5
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.1e-33 146.7 210 36.7
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 2.3e-32 143.3 203 37.4
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.7e-32 141.7 216 35.2
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 4.3e-31 139.0 133 49.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.6e-30 137.1 121 53.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.8e-30 136.3 163 41.7
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-28 128.3 163 39.9
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 6.5e-27 125.2 138 42.8
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 7.1e-26 121.7 120 52.5
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.1e-25 120.2 123 46.3
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.0e-24 116.3 197 32.0
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.7e-24 114.8 136 41.9
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.5e-23 114.0 136 42.6
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 7.4e-23 111.7 123 43.9
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 2.1e-22 110.2 154 37.7
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.6e-20 101.7 112 42.9
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 3.6e-17 92.8 101 42.6
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-16 90.9 91 48.4
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 4.5e-12 75.9 73 45.2
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 6.5e-11 72.0 54 59.3
CAN.G1963.4 Capsicum annuum HOM05D001514 ORTHO05D005209 4.2e-10 69.3 66 45.5
Solyc10g055040.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-08 64.3 138 27.5
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 2.3e-08 63.5 73 38.4
BcaC07g40291 Brassica carinata HOM05D001514 ORTHO05D005209 3.0e-08 63.2 55 54.5
C08p34050 Brassica napus HOM05D001514 ORTHO05D005209 3.0e-08 63.2 55 54.5
BolC8t51003H Brassica oleracea HOM05D001514 ORTHO05D005209 1.1e-07 61.2 54 53.7
Cre11.g476900 Chlamydomonas reinhardtii HOM05D001514 ORTHO05D005209 9.7e-07 58.2 163 26.4


User provided reference genes

Program Settings