Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.0e-215 751.5 361 100.0
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.2e-141 506.1 500 57.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.2e-141 506.1 500 57.8
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.4e-126 455.3 499 51.7
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 9.8e-126 454.1 497 51.9
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 6.3e-125 451.4 489 51.3
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 8.3e-125 451.1 499 50.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-124 450.7 373 62.2
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.4e-124 450.3 500 51.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 1.8e-124 449.9 499 50.7
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 2.4e-124 449.5 499 51.1
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-124 449.5 499 50.7
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-124 449.5 499 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 3.1e-124 449.1 499 51.1
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.1e-124 449.1 499 50.9
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 5.4e-124 448.4 499 50.5
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 7.0e-124 448.0 499 50.5
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 7.0e-124 448.0 499 50.5
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 7.0e-124 448.0 492 51.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 7.0e-124 448.0 499 50.5
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 9.2e-124 447.6 499 50.5
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 9.2e-124 447.6 499 50.5
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.2e-123 447.2 499 50.5
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.2e-123 447.2 499 50.1
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.2e-123 447.2 499 50.3
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.6e-123 446.8 499 50.5
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.6e-123 446.8 373 61.7
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 2.0e-123 446.4 499 50.3
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.0e-123 446.4 373 61.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 2.7e-123 446.0 499 50.3
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 2.7e-123 446.0 492 51.0
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.7e-123 446.0 499 49.9
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 3.5e-123 445.7 499 50.3
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.5e-123 445.7 499 50.3
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 4.5e-123 445.3 499 50.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 4.5e-123 445.3 499 50.1
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 5.9e-123 444.9 373 60.9
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 5.9e-123 444.9 373 61.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 5.9e-123 444.9 373 61.7
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 5.9e-123 444.9 499 50.5
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 7.7e-123 444.5 373 61.4
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.7e-123 444.5 499 50.1
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 7.7e-123 444.5 499 49.9
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 7.7e-123 444.5 499 50.1
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-123 444.5 364 61.8
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 7.7e-123 444.5 499 50.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 7.7e-123 444.5 499 50.1
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 1.0e-122 444.1 500 49.8
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.0e-122 444.1 499 50.1
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.0e-122 444.1 499 50.5
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.0e-122 444.1 373 61.4
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.0e-122 444.1 373 61.7
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.3e-122 443.7 499 49.7
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 1.3e-122 443.7 499 49.7
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.3e-122 443.7 499 49.7
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.3e-122 443.7 499 49.7
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 1.3e-122 443.7 499 49.7
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.3e-122 443.7 499 49.9
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.3e-122 443.7 373 61.4
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 1.7e-122 443.4 499 49.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 1.7e-122 443.4 499 49.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 2.3e-122 443.0 364 61.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.3e-122 443.0 499 50.1
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.3e-122 443.0 373 61.4
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.9e-122 442.6 373 61.1
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 3.8e-122 442.2 499 49.9
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 3.8e-122 442.2 499 50.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 3.8e-122 442.2 499 49.7
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 3.8e-122 442.2 499 49.5
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.8e-122 442.2 373 61.4
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 3.8e-122 442.2 499 49.5
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 5.0e-122 441.8 373 60.6
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 5.0e-122 441.8 499 49.9
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 5.0e-122 441.8 373 61.4
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.5
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.9
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.9
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.9
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 6.6e-122 441.4 373 61.4
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 6.6e-122 441.4 499 49.9
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 8.6e-122 441.0 373 61.7
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-121 440.7 499 49.7
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 1.1e-121 440.7 499 49.3
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.5e-121 440.3 499 49.3
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.5e-121 440.3 373 60.6
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 1.5e-121 440.3 373 60.9
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 7.3e-121 438.0 375 60.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 9.5e-121 437.6 373 60.3
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 9.5e-121 437.6 373 60.1
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.6e-120 436.8 499 49.5
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 3.6e-120 435.6 373 59.8
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 4.7e-120 435.3 373 60.3
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.1e-120 434.9 373 59.8
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 8.0e-120 434.5 273 76.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 4.0e-119 432.2 489 49.1
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.8e-118 427.6 531 46.5
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 6.4e-117 424.9 273 74.0
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.4e-116 423.7 535 46.7
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.8e-116 423.3 501 48.7
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.4e-116 422.9 273 76.2
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.0e-115 419.9 373 59.2
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.1e-113 414.1 483 50.1
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.3e-113 412.5 262 74.8
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.4e-110 402.5 251 76.5
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.4e-110 402.1 434 52.3
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.3e-109 400.6 434 52.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.7e-109 400.2 510 46.3
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-108 397.1 269 76.2
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.1e-108 395.6 375 56.0
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.3e-101 374.0 377 54.4
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 4.9e-101 372.1 467 46.9
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.0e-98 362.8 433 47.6
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 3.1e-95 352.8 462 45.9
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.9e-93 345.5 364 53.6
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.6e-86 321.6 215 77.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.6e-81 305.4 423 45.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-79 301.2 301 54.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 8.4e-77 291.6 259 58.7
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.6e-70 270.0 231 59.7
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.6e-70 270.0 231 59.7
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 6.0e-67 258.8 215 62.3
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 5.3e-63 245.7 291 49.1
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.4e-62 243.0 203 59.1
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.0e-61 241.5 353 41.6
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 4.2e-60 236.1 145 75.9
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 5.7e-57 225.7 156 71.2
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 2.8e-56 223.4 148 73.6
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.8e-56 222.6 369 40.9
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.3e-55 219.2 127 77.2
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 6.5e-53 212.2 246 47.6
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.5e-46 191.0 326 37.1
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 2.6e-41 173.7 98 77.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.4e-36 155.2 175 50.9
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.2e-28 130.2 163 46.6
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.7e-21 107.8 52 100.0
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.4e-15 88.2 83 57.8
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-14 84.0 46 82.6
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-14 84.0 46 82.6
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 6.8e-10 69.3 38 76.3
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.8e-07 61.2 88 45.5
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-07 60.1 32 84.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-07 60.1 32 84.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.5e-06 57.0 153 32.0
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.5e-06 57.0 32 81.2
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.5e-06 57.0 32 81.2


User provided reference genes

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