Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.4e-212 741.9 366 100.0
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.0e-183 645.2 364 85.7
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.7e-181 639.4 365 83.0
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 4.5e-179 631.3 365 82.5
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 8.5e-178 627.1 364 82.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 8.5e-178 627.1 367 82.3
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.1e-177 626.7 364 83.2
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 2.5e-177 625.5 365 82.2
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.5e-177 625.5 362 83.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 3.2e-177 625.2 363 83.5
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.2e-177 625.2 365 82.5
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 3.2e-177 625.2 365 81.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 4.2e-177 624.8 365 82.5
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 9.4e-177 623.6 365 82.5
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 1.6e-176 622.9 358 83.2
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.6e-176 622.9 357 83.8
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 1.6e-176 622.9 356 83.1
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.6e-176 622.9 357 82.6
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.7e-176 622.1 364 81.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 2.7e-176 622.1 365 81.4
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 2.7e-176 622.1 367 81.7
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 6.1e-176 620.9 364 82.1
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 6.1e-176 620.9 364 81.3
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 6.1e-176 620.9 368 82.1
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 8.0e-176 620.5 363 81.5
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 8.0e-176 620.5 364 81.0
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 8.0e-176 620.5 362 81.8
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.0e-176 620.5 365 81.4
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 8.0e-176 620.5 365 81.1
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.0e-175 620.2 356 83.4
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.0e-175 620.2 356 83.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.0e-175 620.2 367 81.5
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.0e-175 620.2 354 83.9
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.0e-175 620.2 365 81.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.4e-175 619.8 362 81.5
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.4e-175 619.8 367 81.5
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.4e-175 619.8 367 81.5
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.4e-175 619.8 365 81.9
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.3e-175 619.0 362 81.5
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.3e-175 619.0 368 81.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 3.0e-175 618.6 365 81.1
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.0e-175 618.6 357 82.4
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 3.0e-175 618.6 366 80.6
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 3.0e-175 618.6 366 81.1
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.0e-175 618.2 366 81.4
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 4.0e-175 618.2 365 81.1
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 5.2e-175 617.8 362 80.9
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 5.2e-175 617.8 364 80.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 5.2e-175 617.8 369 80.5
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.8e-175 617.5 369 80.8
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 6.8e-175 617.5 362 81.5
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-174 616.7 365 81.1
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.2e-174 616.7 370 80.8
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.0e-174 615.9 357 82.1
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.0e-174 615.9 357 82.1
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.0e-174 615.9 362 80.7
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.4e-174 615.1 370 80.5
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 3.4e-174 615.1 350 83.4
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 4.4e-174 614.8 364 81.0
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.4e-174 614.8 362 80.9
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 5.7e-174 614.4 353 83.3
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 5.7e-174 614.4 364 81.3
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 7.5e-174 614.0 357 81.8
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.5e-174 614.0 365 82.2
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 7.5e-174 614.0 364 81.0
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 7.5e-174 614.0 357 82.1
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 9.8e-174 613.6 357 82.1
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.3e-173 613.2 360 80.6
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 1.3e-173 613.2 364 80.2
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.3e-173 613.2 352 83.2
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 2.8e-173 612.1 357 81.5
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.8e-173 612.1 357 81.5
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 3.7e-173 611.7 356 81.5
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 3.7e-173 611.7 357 81.8
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 3.7e-173 611.7 352 83.2
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 4.9e-173 611.3 353 82.2
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 4.9e-173 611.3 365 80.0
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 6.3e-173 610.9 365 80.3
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 6.3e-173 610.9 357 81.5
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 8.3e-173 610.5 357 81.2
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 8.3e-173 610.5 357 81.2
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.3e-173 610.5 358 81.6
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.1e-172 610.1 357 81.2
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 1.1e-172 610.1 353 83.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.4e-172 609.8 357 81.2
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 1.4e-172 609.8 357 81.0
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.4e-172 609.8 364 79.7
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.4e-172 609.8 365 79.7
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 1.4e-172 609.8 364 79.4
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.8e-172 609.4 353 82.2
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.8e-172 609.4 357 81.2
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 3.1e-172 608.6 354 82.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 4.1e-172 608.2 351 82.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 5.4e-172 607.8 374 79.1
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 5.4e-172 607.8 368 84.8
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 7.0e-172 607.4 359 81.3
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 7.0e-172 607.4 376 79.0
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 9.1e-172 607.1 355 81.7
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.2e-171 606.7 362 80.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 3.5e-171 605.1 353 81.6
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 7.7e-171 604.0 357 81.0
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.0e-170 603.6 366 80.1
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 2.3e-170 602.4 352 81.8
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 6.6e-170 600.9 352 81.5
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.5e-169 599.7 352 81.5
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.5e-169 599.7 352 81.2
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.3e-169 598.2 354 80.8
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 7.2e-169 597.4 361 79.5
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 7.2e-169 597.4 348 81.9
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 2.1e-168 595.9 383 76.8
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 2.4e-164 582.4 364 75.3
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 7.8e-163 577.4 333 82.6
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 3.9e-162 575.1 324 84.0
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 2.3e-154 549.3 364 75.3
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 2.8e-152 542.3 357 72.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.4e-151 540.0 286 88.8
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 3.1e-151 538.9 357 73.9
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 3.7e-149 531.9 357 70.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.2e-144 514.6 280 88.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.8e-143 513.1 349 72.2
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 7.6e-142 507.7 350 71.7
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 2.9e-141 505.8 280 86.8
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 8.4e-141 504.2 278 86.0
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 2.4e-140 502.7 265 89.4
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 1.1e-137 493.8 268 88.1
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.0e-134 483.0 349 67.3
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.9e-125 451.8 362 64.1
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.3e-122 443.7 250 85.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 6.6e-122 441.4 242 87.2
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 6.0e-115 418.3 248 79.4
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.1e-112 407.9 239 81.6
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.7e-109 400.2 330 63.0
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.3e-101 374.0 239 74.5
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 1.5e-89 334.0 276 62.7
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 2.5e-52 210.3 363 38.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.2e-49 201.4 132 72.0
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.5e-49 201.1 132 71.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.9e-40 169.5 118 66.9
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.1e-39 168.3 118 66.9
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.5e-36 157.9 101 76.2
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 5.2e-34 149.4 104 69.2
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-33 147.1 103 68.9
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 2.6e-33 147.1 103 68.9
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-28 131.7 94 67.0
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.5e-25 121.3 117 57.3
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 5.8e-25 119.4 94 61.7
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 3.8e-24 116.7 71 73.2
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 8.4e-24 115.5 86 68.6
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.6e-22 111.3 58 89.7
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 6.2e-19 99.4 47 89.4
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 8.1e-19 99.0 58 84.5
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 8.1e-19 99.0 105 53.3
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.5e-12 78.2 42 90.5
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 4.3e-12 76.6 81 48.1
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 6.2e-11 72.8 39 87.2
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 3.4e-09 67.0 62 50.0
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.9e-08 63.2 53 62.3


User provided reference genes

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