Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 7.1e-171 604.0 335 100.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.4e-155 552.4 338 88.5
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 9.3e-155 550.4 335 91.6
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 3.1e-150 535.4 335 84.8
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 4.8e-143 511.5 337 85.5
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-142 510.4 337 85.5
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.1e-142 510.4 337 85.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 6.9e-142 507.7 337 84.0
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.2e-141 506.9 337 84.0
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.5e-141 506.5 338 84.6
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.4e-141 505.4 337 84.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 7.6e-141 504.2 337 82.2
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.7e-140 503.1 337 82.2
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.8e-140 501.9 339 83.2
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.5e-140 501.1 337 83.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 8.5e-140 500.7 337 82.8
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.4e-139 500.0 338 81.7
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.5e-139 499.2 339 83.2
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.5e-139 499.2 337 82.5
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.5e-139 499.2 339 82.0
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 4.2e-139 498.4 339 82.3
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 4.2e-139 498.4 337 81.3
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 5.5e-139 498.0 339 83.2
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.5e-139 498.0 337 82.8
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 7.2e-139 497.7 339 82.6
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 7.2e-139 497.7 337 82.2
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 9.3e-139 497.3 337 81.6
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 9.3e-139 497.3 337 82.8
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.7e-138 495.7 337 83.7
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.7e-138 495.7 339 82.6
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.7e-138 495.7 341 82.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.6e-138 495.4 337 82.5
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 4.6e-138 495.0 337 77.4
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-138 494.6 337 81.6
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 7.9e-138 494.2 337 81.3
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 7.9e-138 494.2 337 81.9
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.0e-137 493.8 340 81.2
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.3e-137 493.4 349 82.2
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.3e-137 493.4 335 81.8
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 1.3e-137 493.4 337 81.0
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.8e-137 493.0 337 81.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.3e-137 492.7 338 78.7
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.0e-137 492.3 337 75.1
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 3.0e-137 492.3 339 81.7
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 6.7e-137 491.1 338 78.7
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 8.7e-137 490.7 353 79.9
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.1e-136 490.3 337 80.7
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.5e-136 489.2 338 80.2
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 5.7e-136 488.0 337 80.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 7.4e-136 487.6 330 82.7
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 7.4e-136 487.6 338 79.0
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.4e-136 487.6 338 82.2
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.3e-135 486.9 337 82.2
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.3e-135 486.9 339 81.1
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 2.2e-135 486.1 336 80.1
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 2.2e-135 486.1 336 80.1
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 4.8e-135 485.0 338 77.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.8e-135 485.0 340 80.9
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 6.3e-135 484.6 365 76.7
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 8.2e-135 484.2 337 80.7
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.4e-134 482.6 337 81.0
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 2.4e-134 482.6 337 81.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 3.1e-134 482.3 337 80.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.1e-134 482.3 337 81.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.1e-134 482.3 337 81.0
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.1e-134 481.9 355 78.0
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.1e-134 481.9 355 78.0
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 5.3e-134 481.5 337 80.4
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.2e-133 480.3 340 79.7
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.5e-133 479.9 344 79.1
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.5e-133 478.4 339 80.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 5.9e-133 478.0 372 76.3
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.0e-132 477.2 337 78.9
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.7e-132 476.5 340 80.3
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.9e-132 475.7 359 76.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 5.0e-132 474.9 337 78.0
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 6.5e-132 474.6 338 78.1
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 6.5e-132 474.6 338 78.1
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 1.9e-131 473.0 339 79.6
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.5e-131 472.6 352 76.7
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.2e-131 472.2 337 78.3
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 4.2e-131 471.9 337 77.7
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.7e-130 469.2 348 77.6
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 6.1e-130 468.0 339 76.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.4e-129 466.8 321 80.7
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-129 466.5 347 76.4
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 1.8e-129 466.5 337 80.1
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.0e-129 465.7 337 79.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.1e-128 463.8 330 78.8
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.1e-128 463.8 347 76.1
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 1.7e-127 459.9 331 78.2
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 2.8e-127 459.1 349 76.5
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 3.7e-127 458.8 321 80.7
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 4.8e-127 458.4 375 72.3
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.1e-126 457.2 346 76.3
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.2e-124 449.5 337 75.4
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.2e-124 449.5 337 77.2
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 5.0e-124 448.4 321 78.5
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 6.5e-124 448.0 370 71.6
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 5.5e-123 444.9 325 78.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 5.5e-123 444.9 325 78.5
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.8e-121 437.6 365 71.0
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.8e-121 437.6 365 71.0
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.7e-116 423.3 337 72.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.0e-116 421.8 305 80.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 6.5e-116 421.4 338 72.8
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.1e-115 420.6 337 66.5
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.0e-113 414.1 276 85.9
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.3e-113 412.9 284 81.3
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 2.2e-111 406.4 332 73.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.0e-108 397.5 352 67.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 4.2e-107 392.1 516 51.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.6e-104 382.9 222 83.8
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.9e-100 369.4 337 67.7
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 4.2e-99 365.5 274 79.6
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.2e-94 347.8 335 64.8
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 2.7e-93 346.3 320 70.0
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.0e-92 344.4 321 68.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 8.3e-87 324.7 257 78.6
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.4e-86 323.9 381 49.6
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.2e-86 322.8 337 62.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 4.3e-83 312.4 330 53.6
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-78 297.4 164 87.2
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.1e-67 261.2 209 77.5
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.4e-62 244.2 331 47.1
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.2e-61 241.1 173 70.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.1e-54 218.0 116 90.5
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.4e-43 178.7 82 97.6
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 5.5e-38 162.5 166 59.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.6e-37 159.5 90 87.8
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 8.4e-31 138.7 90 81.1
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.1e-30 138.3 90 82.2
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.0e-20 103.6 54 92.6
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.1e-19 101.7 204 29.4
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-19 100.5 99 51.5
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.0e-16 90.9 269 29.4
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.5e-15 85.9 64 67.2
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 1.4e-12 78.2 39 87.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.7e-12 75.9 54 70.4
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-11 75.1 41 87.8
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 8.2e-10 68.9 45 71.1
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-09 68.6 87 65.5


User provided reference genes

Program Settings