Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 3.3e-234 814.7 412 100.0
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 2.7e-164 582.4 399 70.9
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 8.7e-163 577.4 405 69.4
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 2.8e-153 545.8 399 66.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 3.4e-151 538.9 405 64.2
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.0e-150 537.3 405 63.7
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 4.2e-149 531.9 405 63.2
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 7.2e-149 531.2 405 63.0
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 9.4e-149 530.8 405 62.7
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 1.6e-148 530.0 407 62.9
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.7e-148 529.3 405 63.7
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 4.7e-148 528.5 403 62.0
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 6.1e-148 528.1 405 62.5
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 6.1e-148 528.1 405 62.7
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 6.1e-148 528.1 405 62.0
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 6.1e-148 528.1 405 62.0
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 7.9e-148 527.7 407 64.4
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 7.9e-148 527.7 405 62.7
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.0e-147 527.3 405 62.2
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.4e-147 526.9 405 62.5
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 2.3e-147 526.2 405 61.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.9e-147 525.4 405 62.7
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 3.9e-147 525.4 402 62.7
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 6.7e-147 524.6 403 62.5
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 6.7e-147 524.6 405 62.7
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 8.8e-147 524.2 405 62.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 8.8e-147 524.2 405 61.7
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.5e-146 523.5 401 62.6
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 2.6e-146 522.7 405 62.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.3e-146 522.3 405 61.2
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 3.3e-146 522.3 405 62.2
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 4.4e-146 521.9 405 61.0
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 3.7e-145 518.8 405 62.2
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.8e-145 518.5 405 60.7
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.8e-145 518.5 406 60.8
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 6.3e-145 518.1 405 63.0
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 6.3e-145 518.1 405 60.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 8.2e-145 517.7 399 62.4
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 1.1e-144 517.3 405 61.0
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 1.4e-144 516.9 405 60.7
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.1e-144 515.8 405 61.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.1e-144 515.8 405 61.5
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 4.1e-144 515.4 405 60.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 4.1e-144 515.4 405 60.5
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 4.1e-144 515.4 402 62.4
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 4.1e-144 515.4 436 58.3
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 5.3e-144 515.0 405 60.7
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.3e-144 515.0 405 61.0
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 7.0e-144 514.6 411 60.6
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 9.1e-144 514.2 405 60.5
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 9.1e-144 514.2 408 60.8
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.2e-143 513.8 405 60.0
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 1.2e-143 513.8 405 60.0
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 1.2e-143 513.8 403 60.3
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.6e-143 512.7 405 61.0
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.6e-143 512.7 405 60.0
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.5e-143 511.9 403 60.8
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 2.2e-142 509.6 405 60.5
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 5.0e-142 508.4 405 60.5
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 8.5e-142 507.7 405 59.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 8.5e-142 507.7 405 60.0
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 1.5e-141 506.9 405 60.5
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.5e-141 506.9 405 60.2
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 1.9e-141 506.5 405 61.2
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.5e-141 506.1 406 59.4
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 9.4e-141 504.2 405 58.8
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-140 503.8 405 59.5
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-140 503.4 405 59.8
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.6e-140 503.4 405 59.5
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.6e-140 503.4 405 59.8
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.7e-140 502.7 405 59.3
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 2.7e-140 502.7 405 59.3
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 3.6e-140 502.3 407 60.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 3.6e-140 502.3 412 58.3
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 4.7e-140 501.9 405 59.3
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 8.0e-140 501.1 405 59.5
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.4e-139 500.4 405 58.5
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.8e-139 500.0 432 58.1
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 1.8e-139 500.0 405 60.5
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 4.0e-139 498.8 400 60.8
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 5.2e-139 498.4 405 58.5
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 1.1e-138 497.3 405 59.0
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 2.0e-138 496.5 405 58.5
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 2.0e-138 496.5 400 60.2
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 1.1e-136 490.7 405 60.0
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 2.4e-136 489.6 405 57.8
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 5.3e-136 488.4 406 58.9
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 9.1e-136 487.6 417 57.1
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 9.1e-136 487.6 417 57.1
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-135 486.9 417 56.8
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 1.0e-134 484.2 426 55.2
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 3.2e-133 479.2 405 57.3
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 6.1e-132 474.9 404 58.4
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 2.3e-131 473.0 311 71.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 5.2e-131 471.9 405 58.5
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.2e-129 466.5 367 61.6
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.8e-129 466.1 366 61.5
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 4.1e-128 462.2 402 57.2
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 6.1e-124 448.4 407 54.1
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.3e-121 440.7 405 54.6
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 2.2e-121 439.9 367 59.4
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.7e-116 422.2 289 69.2
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 8.0e-116 421.4 405 53.1
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.0e-115 419.5 405 54.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 3.0e-115 419.5 289 68.9
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 2.7e-111 406.4 303 63.7
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.2e-108 397.5 409 49.1
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 3.4e-106 389.4 473 45.5
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 4.9e-105 385.6 254 72.0
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 4.3e-101 372.5 254 68.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 2.3e-99 366.7 401 48.1
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 4.1e-96 355.9 292 57.2
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.3e-93 345.9 314 56.1
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.7e-87 326.6 304 51.6
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 6.8e-83 312.0 283 57.6
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 7.6e-82 308.5 285 53.3
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.6e-78 295.4 314 47.1
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 1.6e-71 274.2 191 69.6
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.4e-69 265.4 235 55.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 2.2e-65 253.8 400 34.8
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 4.6e-63 246.1 198 60.6
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-61 240.4 195 60.0
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 1.1e-59 235.0 173 63.6
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 1.2e-58 231.5 327 37.6
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.6e-58 228.8 204 57.8
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 3.4e-50 203.4 334 33.8
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 3.0e-46 190.3 135 68.1
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 3.9e-46 189.9 181 50.8
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.5e-41 172.2 125 63.2
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.9e-38 163.3 120 63.3
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 6.3e-36 156.0 101 71.3
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 9.1e-35 152.1 172 43.0
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.1e-31 139.4 103 62.1
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.4e-30 138.3 83 77.1
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.7e-29 132.9 81 72.8
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.2e-28 131.0 193 38.9
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 5.5e-24 116.3 74 70.3
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 4.4e-21 106.7 115 53.0
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.8e-19 101.3 155 34.8
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-16 90.9 167 31.7
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.2e-16 90.5 115 44.3
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.6e-15 88.2 145 39.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.5e-13 81.6 148 37.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 9.8e-13 79.0 99 47.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.8e-12 76.6 46 73.9
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 9.1e-11 72.4 109 33.9
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 2.7e-10 70.9 54 57.4
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 3.5e-10 70.5 53 66.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 2.2e-09 67.8 55 60.0
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 3.8e-09 67.0 74 50.0
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 7.2e-08 62.8 46 65.2
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.0e-06 58.9 38 71.1


User provided reference genes

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