Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 5.7e-197 690.6 334 100.0
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 5.7e-80 302.0 344 43.3
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 7.5e-80 301.6 345 43.2
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 9.8e-80 301.2 361 44.3
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.3e-79 300.8 343 43.1
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.7e-79 300.4 361 42.7
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 1.7e-79 300.4 345 42.6
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 1.1e-78 297.7 355 43.4
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 1.4e-78 297.4 341 43.1
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.4e-78 297.4 343 43.7
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.4e-78 296.6 342 43.9
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 4.1e-78 295.8 354 44.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 5.4e-78 295.4 366 43.4
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 5.4e-78 295.4 368 41.6
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 9.2e-78 294.7 352 42.6
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 9.2e-78 294.7 352 42.0
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.6e-77 293.9 340 41.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.6e-77 293.9 339 43.1
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.6e-77 293.9 355 42.3
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 2.0e-77 293.5 359 42.1
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 2.7e-77 293.1 440 37.0
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 2.7e-77 293.1 352 42.0
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 3.5e-77 292.7 354 42.9
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 3.5e-77 292.7 345 42.3
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 4.6e-77 292.4 343 42.6
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.6e-77 292.4 354 42.9
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 5.9e-77 292.0 350 42.3
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 5.9e-77 292.0 360 42.5
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 5.9e-77 292.0 354 43.5
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.9e-77 292.0 368 42.1
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 7.8e-77 291.6 368 41.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 7.8e-77 291.6 360 40.0
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.8e-77 291.6 362 42.5
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.8e-77 291.6 360 41.9
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 1.0e-76 291.2 339 42.5
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 1.0e-76 291.2 339 42.5
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.3e-76 290.8 341 43.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.3e-76 290.8 339 42.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 1.7e-76 290.4 347 42.7
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.3e-76 290.0 333 40.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.0e-76 289.7 340 42.4
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 5.0e-76 288.9 339 42.5
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 6.6e-76 288.5 367 43.1
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 6.6e-76 288.5 359 39.3
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.1e-75 287.7 370 40.3
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.9e-75 287.0 345 42.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 2.5e-75 286.6 341 42.5
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.3e-75 286.2 364 40.4
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 3.3e-75 286.2 369 40.1
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.3e-75 286.2 360 41.4
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.3e-75 286.2 365 40.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 4.3e-75 285.8 346 40.8
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 5.6e-75 285.4 337 42.1
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 5.6e-75 285.4 339 41.6
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 5.6e-75 285.4 363 40.5
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 5.6e-75 285.4 364 40.7
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 7.3e-75 285.0 364 40.4
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 9.5e-75 284.6 363 41.9
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 9.5e-75 284.6 350 42.6
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 9.5e-75 284.6 347 40.9
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 1.2e-74 284.3 369 40.4
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.2e-74 284.3 363 39.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 1.6e-74 283.9 376 40.7
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 2.1e-74 283.5 350 40.6
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.1e-74 283.5 364 40.1
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.1e-74 283.5 362 40.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 4.7e-74 282.3 362 39.5
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 6.2e-74 282.0 364 39.3
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 8.0e-74 281.6 352 40.1
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 8.0e-74 281.6 345 38.6
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.8e-73 280.4 353 39.4
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.8e-73 280.4 358 39.1
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.8e-73 280.4 358 39.1
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.3e-73 280.0 359 40.4
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 4.0e-73 279.3 368 40.5
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 5.2e-73 278.9 374 40.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 5.2e-73 278.9 365 40.3
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 5.2e-73 278.9 358 41.3
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 8.9e-73 278.1 364 39.3
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.2e-72 277.7 361 39.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.2e-72 277.7 345 40.3
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 1.5e-72 277.3 397 39.0
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 9.8e-72 274.6 416 38.5
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.3e-71 274.2 361 38.5
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.3e-71 274.2 362 41.2
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.3e-71 274.2 389 40.6
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.7e-71 272.7 364 40.1
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.9e-70 270.4 357 39.5
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 9.2e-70 268.1 379 39.6
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 9.2e-70 268.1 355 39.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.0e-69 266.9 347 41.2
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 4.6e-69 265.8 412 35.4
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.3e-68 264.2 384 37.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.9e-67 260.4 364 38.2
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.3e-67 259.6 318 41.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 4.3e-67 259.2 274 46.7
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 8.1e-66 255.0 435 34.9
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 8.1e-66 255.0 327 41.9
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.2e-64 251.1 445 33.5
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 9.8e-64 248.1 376 37.5
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 1.9e-62 243.8 352 38.6
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 3.0e-60 236.5 292 40.1
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 8.6e-60 235.0 361 34.6
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.6e-58 230.7 250 44.0
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.0e-56 223.8 499 29.9
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.4e-56 222.6 363 36.4
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 6.4e-55 218.8 297 39.7
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.7e-53 213.4 215 47.4
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.7e-52 210.7 167 56.9
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.7e-52 210.7 358 34.1
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 2.3e-52 210.3 327 35.5
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 3.9e-52 209.5 256 41.0
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.2e-50 204.5 280 39.6
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 4.7e-50 202.6 164 54.3
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 1.7e-47 194.1 363 34.2
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.1e-43 181.4 140 57.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.8e-40 169.1 134 55.2
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.4e-33 147.1 132 47.7
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.8e-31 139.8 238 33.2
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.8e-31 139.8 238 33.2
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 5.5e-30 136.0 350 27.7
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 3.5e-29 133.3 212 34.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 4.0e-25 119.8 80 63.8
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 8.7e-20 102.1 185 34.1
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 6.9e-17 92.4 150 34.7
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.0e-15 88.6 144 30.6
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.0e-15 88.6 144 30.6
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 6.5e-15 85.9 82 47.6
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 1.9e-14 84.3 149 30.9
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 9.1e-09 65.5 81 42.0
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.2e-08 65.1 113 32.7
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 7.2e-06 55.8 80 33.8


User provided reference genes

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