Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.6e-127 458.8 237 100.0
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-67 260.4 193 79.3
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.0e-46 188.7 169 66.3
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-42 176.8 165 64.8
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-36 157.1 145 65.5
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.6e-36 156.0 84 96.4
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.0e-34 150.2 81 93.8
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.4e-34 149.4 81 93.8
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.3e-33 147.5 81 92.6
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.9e-33 145.6 84 89.3
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.4e-32 142.1 81 92.6
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 6.0e-31 138.7 179 49.2
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.3e-30 137.5 181 50.3
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.7e-30 137.1 178 47.2
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.9e-29 133.7 181 46.4
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 2.6e-26 123.2 182 44.0
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 3.4e-26 122.9 179 45.3
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 7.6e-26 121.7 179 44.7
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 1.3e-25 120.9 178 45.5
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 1.7e-25 120.6 179 43.6
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.2e-25 120.2 182 44.0
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 2.2e-25 120.2 182 44.0
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.2e-25 120.2 180 45.6
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.7e-25 119.4 65 93.8
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 3.7e-25 119.4 182 43.4
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 4.9e-25 119.0 179 43.0
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 6.4e-25 118.6 178 47.2
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 8.3e-25 118.2 180 44.4
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.1e-24 117.9 187 42.2
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 1.4e-24 117.5 181 42.0
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 1.4e-24 117.5 180 42.2
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 2.4e-24 116.7 177 44.1
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 4.1e-24 115.9 180 44.4
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 7.1e-24 115.2 178 42.1
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 9.2e-24 114.8 182 42.9
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 9.2e-24 114.8 180 43.3
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 9.2e-24 114.8 180 42.8
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.2e-24 114.8 65 92.3
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.6e-23 114.0 182 44.0
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.1e-23 113.6 180 42.8
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.1e-23 113.6 177 44.1
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 2.7e-23 113.2 180 40.6
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 3.5e-23 112.8 179 41.9
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.6e-23 112.5 177 43.5
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 6.0e-23 112.1 179 41.3
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 7.8e-23 111.7 178 41.0
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.0e-22 111.3 179 41.3
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.0e-22 111.3 179 42.5
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 1.0e-22 111.3 180 42.2
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 1.0e-22 111.3 178 41.0
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 1.3e-22 110.9 180 41.7
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.7e-22 110.5 177 41.2
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 2.3e-22 110.2 182 41.8
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.3e-22 110.2 179 40.8
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 3.0e-22 109.8 178 41.0
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.0e-22 109.8 178 41.0
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.0e-22 109.8 178 41.0
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.0e-22 109.8 179 41.9
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 3.9e-22 109.4 179 41.9
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 5.1e-22 109.0 179 40.8
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 5.1e-22 109.0 178 41.6
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 5.1e-22 109.0 179 42.5
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 6.6e-22 108.6 179 39.1
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 6.6e-22 108.6 179 40.2
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 6.6e-22 108.6 179 42.5
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 8.6e-22 108.2 182 42.3
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 8.6e-22 108.2 179 42.5
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 8.6e-22 108.2 181 39.8
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 1.1e-21 107.8 179 39.7
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.1e-21 107.8 165 42.4
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 1.5e-21 107.5 178 41.6
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 1.9e-21 107.1 173 41.0
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 1.9e-21 107.1 180 41.7
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 1.9e-21 107.1 181 38.7
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 2.5e-21 106.7 164 45.1
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 2.5e-21 106.7 178 40.4
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 2.5e-21 106.7 191 39.3
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 3.3e-21 106.3 181 39.2
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 3.3e-21 106.3 179 40.2
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 3.3e-21 106.3 179 40.2
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 3.3e-21 106.3 181 39.2
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 4.3e-21 105.9 179 40.8
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 4.3e-21 105.9 179 40.2
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 4.3e-21 105.9 178 41.6
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 5.6e-21 105.5 178 41.6
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 5.6e-21 105.5 181 42.0
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 5.6e-21 105.5 179 40.8
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 7.3e-21 105.1 179 39.7
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 7.3e-21 105.1 178 39.9
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 9.6e-21 104.8 178 41.0
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 9.6e-21 104.8 181 38.7
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 1.2e-20 104.4 180 41.7
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 1.6e-20 104.0 181 39.2
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.6e-20 104.0 178 40.4
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 2.1e-20 103.6 175 39.4
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 2.1e-20 103.6 181 39.8
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.6e-20 102.8 160 42.5
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 4.7e-20 102.4 178 41.0
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 4.7e-20 102.4 178 40.4
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 8.1e-20 101.7 180 40.0
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.4e-19 100.9 95 58.9
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 1.4e-19 100.9 179 42.5
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 1.4e-19 100.9 180 39.4
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 1.8e-19 100.5 182 41.2
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.8e-19 100.5 180 41.1
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 1.8e-19 100.5 180 40.6
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.4e-19 100.1 177 40.1
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 2.4e-19 100.1 179 41.3
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 4.0e-19 99.4 179 42.5
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 4.0e-19 99.4 180 40.0
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 5.2e-19 99.0 179 40.2
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 8.9e-19 98.2 182 41.2
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.9e-19 98.2 56 91.1
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.2e-18 97.8 179 37.4
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 2.6e-18 96.7 178 39.9
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 2.6e-18 96.7 93 59.1
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.6e-18 96.7 178 41.0
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 2.6e-18 96.7 178 39.9
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 2.6e-18 96.7 178 37.6
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 3.4e-18 96.3 178 39.9
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 3.4e-18 96.3 179 37.4
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 4.4e-18 95.9 93 59.1
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 7.6e-18 95.1 178 36.0
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 1.3e-17 94.4 178 39.9
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-17 94.4 178 39.9
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 1.3e-17 94.4 178 39.9
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 1.3e-17 94.4 178 39.9
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 1.3e-17 94.4 178 39.9
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 1.7e-17 94.0 178 38.2
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 1.7e-17 94.0 178 39.3
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.7e-17 94.0 54 90.7
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 3.8e-17 92.8 137 46.0
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 6.4e-17 92.0 177 39.0
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 8.4e-17 91.7 179 36.3
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 8.4e-17 91.7 179 36.3
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.1e-16 91.3 84 58.3
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.9e-16 90.5 54 85.2
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 2.4e-16 90.1 111 49.5
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 7.1e-16 88.6 94 53.2
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.6e-15 87.4 50 90.0
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.0e-15 85.5 133 42.1
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 1.9e-13 80.5 172 33.7
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 4.8e-12 75.9 167 35.9
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.4e-11 74.3 91 48.4
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.2e-10 71.2 133 39.1
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 1.5e-10 70.9 159 34.0
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 7.6e-10 68.6 186 32.3
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 9.9e-10 68.2 174 35.6
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 4.9e-09 65.9 46 67.4
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 3.2e-08 63.2 141 36.9
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 4.2e-08 62.8 74 50.0
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.6e-07 60.8 35 82.9
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.7e-07 60.1 83 47.0
HPP92_028030 Vanilla planifolia HOM05D003501 ORTHO05D004388 6.0e-07 58.9 32 84.4
HPP92_000028 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.0e-06 56.6 35 77.1
SMO353G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.1e-06 55.8 30 93.3


User provided reference genes

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