Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO112G0124 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.5e-109 398.3 201 100.0
SMO114G0139 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.7e-69 265.0 193 79.3
SMO144G0146 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 9.8e-59 230.7 180 69.4
SMO364G0671 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.4e-57 226.9 118 94.9
SMO201G0018 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.2e-50 203.0 208 59.6
SMO265G0024 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 6.6e-47 191.4 99 91.9
SMO004G0007 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.9e-44 181.0 103 88.3
SMO361G0623 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.2e-43 180.6 180 58.3
SMO146G0031 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 3.7e-42 175.6 99 86.9
Mapoly0187s0002 Marchantia polymorpha HOM05D003501 ORTHO05D004388 1.1e-41 174.1 192 52.6
Pp3c15_22440 Physcomitrium patens HOM05D003501 ORTHO05D004388 3.0e-39 166.0 189 50.3
SMO340G0317 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.1e-39 165.2 88 88.6
CBR_g11105 Chara braunii HOM05D003501 ORTHO05D004388 1.9e-38 163.3 192 49.5
Sabra16G0127400 Salix brachista HOM05D003501 ORTHO05D004388 1.4e-36 157.1 176 48.9
Zm00001eb316080 Zea mays HOM05D003501 ORTHO05D004388 4.0e-36 155.6 189 46.0
CSS0017931 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.2e-35 154.1 191 47.6
AagrBONN_evm.TU.Sc2ySwM_368.3338 Anthoceros agrestis HOM05D003501 ORTHO05D004388 1.5e-35 153.7 189 46.0
HPP92_001388 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.0e-35 153.3 191 47.6
Rhsim08G0066100 Rhododendron simsii HOM05D003501 ORTHO05D004388 2.6e-35 152.9 193 45.6
Oeu018673.1 Olea europaea HOM05D003501 ORTHO05D004388 4.4e-35 152.1 191 47.6
vmacro18212 Vaccinium macrocarpon HOM05D003501 ORTHO05D004388 4.4e-35 152.1 193 45.6
Hma1.2p1_0199F.1_g085800 Hydrangea macrophylla HOM05D003501 ORTHO05D004388 7.5e-35 151.4 191 46.6
Os03g0833700 Oryza sativa ssp. japonica HOM05D003501 ORTHO05D004388 7.5e-35 151.4 189 45.5
Actinidia38747 Actinidia chinensis HOM05D003501 ORTHO05D004388 1.7e-34 150.2 191 46.6
Dinv15534 Davidia involucrata HOM05D003501 ORTHO05D004388 1.7e-34 150.2 198 45.5
MBI14_g02806_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.7e-34 150.2 192 45.3
MBI14_g41488_MAGBIO Magnolia biondii HOM05D003501 ORTHO05D004388 1.7e-34 150.2 192 45.3
Manes.04G047600 Manihot esculenta HOM05D003501 ORTHO05D004388 2.9e-34 149.4 189 46.0
Potri.001G216400 Populus trichocarpa HOM05D003501 ORTHO05D004388 2.9e-34 149.4 189 45.5
Atru.chr3.3108 Acer truncatum HOM05D003501 ORTHO05D004388 3.7e-34 149.1 189 47.6
AUR62029643 Chenopodium quinoa HOM05D003501 ORTHO05D004388 3.7e-34 149.1 184 45.1
Prupe.4G110100 Prunus persica HOM05D003501 ORTHO05D004388 3.7e-34 149.1 190 45.8
PSO170G5263 Papaver somniferum HOM05D003501 ORTHO05D004388 4.9e-34 148.7 188 45.7
PSO170G6031 Papaver somniferum HOM05D003501 ORTHO05D004388 4.9e-34 148.7 188 45.7
MSTRG.12186 Avicennia marina HOM05D003501 ORTHO05D004388 6.4e-34 148.3 190 45.8
TAR481G0007 Trochodendron aralioides HOM05D003501 ORTHO05D004388 6.4e-34 148.3 191 46.1
Potri.009G016000 Populus trichocarpa HOM05D003501 ORTHO05D004388 1.1e-33 147.5 188 45.2
CSS0035358 Camellia sinensis var. sinensis HOM05D003501 ORTHO05D004388 1.9e-33 146.7 175 49.7
Actinidia26218 Actinidia chinensis HOM05D003501 ORTHO05D004388 2.4e-33 146.4 191 45.5
Lj2A610G28 Lonicera japonica HOM05D003501 ORTHO05D004388 2.4e-33 146.4 191 45.5
PSO063G0318 Papaver somniferum HOM05D003501 ORTHO05D004388 2.4e-33 146.4 188 45.7
SMO269G0020 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 2.4e-33 146.4 81 91.4
unitig_21.g20948 Utricularia gibba HOM05D003501 ORTHO05D004388 2.4e-33 146.4 187 47.1
Sc10g0003820 Simmondsia chinensis HOM05D003501 ORTHO05D004388 3.2e-33 146.0 191 45.0
Atru.chr9.1898 Acer truncatum HOM05D003501 ORTHO05D004388 4.1e-33 145.6 190 46.8
MD10G1234700 Malus domestica HOM05D003501 ORTHO05D004388 4.1e-33 145.6 190 45.3
SMO330G0055 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 4.1e-33 145.6 81 91.4
SGA_v2.0_scaffold135G34778 Striga asiatica HOM05D003501 ORTHO05D004388 4.1e-33 145.6 190 45.3
TWI79G0225 Tripterygium wilfordii HOM05D003501 ORTHO05D004388 4.1e-33 145.6 190 45.3
SHI25258 Sapria himalayana HOM05D003501 ORTHO05D004388 7.1e-33 144.8 189 45.5
SMO065G0004 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.1e-33 144.8 81 92.6
AUR62025912 Chenopodium quinoa HOM05D003501 ORTHO05D004388 9.2e-33 144.4 171 46.8
Ciclev10028663m.g Citrus clementina HOM05D003501 ORTHO05D004388 9.2e-33 144.4 189 45.0
Cpa.g.sc56.89 Carica papaya HOM05D003501 ORTHO05D004388 1.2e-32 144.1 190 43.7
Migut.H00888 Erythranthe guttata HOM05D003501 ORTHO05D004388 1.2e-32 144.1 190 43.7
PGR102G2752 Punica granatum HOM05D003501 ORTHO05D004388 1.2e-32 144.1 189 44.4
Hund15639 Selenicereus undatus HOM05D003501 ORTHO05D004388 1.6e-32 143.7 191 42.9
arahy.Tifrunner.gnm1.ann1.57UCU4 Arachis hypogaea HOM05D003501 ORTHO05D004388 2.1e-32 143.3 190 44.7
RcHm_v2.0_Chr5g0019871 Rosa chinensis HOM05D003501 ORTHO05D004388 2.1e-32 143.3 189 45.5
Eucgr.B03813 Eucalyptus grandis HOM05D003501 ORTHO05D004388 2.7e-32 142.9 189 46.6
arahy.Tifrunner.gnm1.ann1.FG3FW1 Arachis hypogaea HOM05D003501 ORTHO05D004388 4.6e-32 142.1 190 44.7
CiPaw.08G137600 Carya illinoinensis HOM05D003501 ORTHO05D004388 4.6e-32 142.1 190 43.2
FvH4_3g12140 Fragaria vesca HOM05D003501 ORTHO05D004388 4.6e-32 142.1 189 45.5
FAN16G1741 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.6e-32 142.1 189 45.5
FAN25G1502 Fragaria x ananassa HOM05D003501 ORTHO05D004388 4.6e-32 142.1 189 45.5
CiPaw.14G095200 Carya illinoinensis HOM05D003501 ORTHO05D004388 6.0e-32 141.7 190 43.2
Aqoxy3G03267 Aquilegia oxysepala HOM05D003501 ORTHO05D004388 7.8e-32 141.4 190 43.7
BraA08t32548Z Brassica rapa HOM05D003501 ORTHO05D004388 7.8e-32 141.4 189 46.6
Nn8g40776 Nelumbo nucifera HOM05D003501 ORTHO05D004388 7.8e-32 141.4 191 44.5
SalBow1G3035 Salvia bowleyana HOM05D003501 ORTHO05D004388 7.8e-32 141.4 188 45.7
Aa31LG2G15030 Aethionema arabicum HOM05D003501 ORTHO05D004388 1.7e-31 140.2 189 45.5
Sed0017179 Sechium edule HOM05D003501 ORTHO05D004388 1.7e-31 140.2 189 43.9
BolC8t47419H Brassica oleracea HOM05D003501 ORTHO05D004388 2.3e-31 139.8 189 46.0
HanXRQChr11g0321781 Helianthus annuus HOM05D003501 ORTHO05D004388 2.3e-31 139.8 189 42.3
VMungo0720G0165 Vigna mungo HOM05D003501 ORTHO05D004388 2.3e-31 139.8 190 44.2
FAN21G1855 Fragaria x ananassa HOM05D003501 ORTHO05D004388 3.0e-31 139.4 189 45.0
Lsat_1_v5_gn_4_134160 Lactuca sativa HOM05D003501 ORTHO05D004388 3.0e-31 139.4 192 42.7
BcaC07g37193 Brassica carinata HOM05D003501 ORTHO05D004388 3.9e-31 139.0 189 46.0
Thhalv10013826m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 5.1e-31 138.7 189 46.0
EL10As4g23426 Beta vulgaris HOM05D003501 ORTHO05D004388 6.6e-31 138.3 190 42.1
VMungo0251G0431 Vigna mungo HOM05D003501 ORTHO05D004388 6.6e-31 138.3 190 43.2
ECA232G0193 Erigeron canadensis HOM05D003501 ORTHO05D004388 8.6e-31 137.9 189 43.9
SMO163G0016 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 8.6e-31 137.9 84 81.0
BcaB07g33815 Brassica carinata HOM05D003501 ORTHO05D004388 1.1e-30 137.5 189 45.5
Thhalv10028736m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 1.1e-30 137.5 189 44.4
Sp6g23090 Schrenkiella parvula HOM05D003501 ORTHO05D004388 1.1e-30 137.5 189 45.5
Ah.11g044900 Amaranthus hybridus HOM05D003501 ORTHO05D004388 1.5e-30 137.1 190 42.6
BcaB04g17480 Brassica carinata HOM05D003501 ORTHO05D004388 1.5e-30 137.1 189 46.6
SMO112G0083 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 1.5e-30 137.1 81 87.7
CDE01G0277 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 1.9e-30 136.7 130 53.8
Lj2g0019396 Lotus japonicus HOM05D003501 ORTHO05D004388 1.9e-30 136.7 190 45.3
Lalb_Chr09g0327341 Lupinus albus HOM05D003501 ORTHO05D004388 1.9e-30 136.7 190 43.2
Phvul.002G221600 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 2.5e-30 136.3 190 43.2
Sopen02g018490 Solanum pennellii HOM05D003501 ORTHO05D004388 2.5e-30 136.3 190 44.2
Solyc02g069340.4 Solanum lycopersicum HOM05D003501 ORTHO05D004388 3.3e-30 136.0 190 44.2
BcaC08g42972 Brassica carinata HOM05D003501 ORTHO05D004388 4.3e-30 135.6 189 45.0
A10p06220 Brassica napus HOM05D003501 ORTHO05D004388 4.3e-30 135.6 189 45.0
C06p02140 Brassica napus HOM05D003501 ORTHO05D004388 4.3e-30 135.6 189 45.0
BolC6t35344H Brassica oleracea HOM05D003501 ORTHO05D004388 4.3e-30 135.6 189 45.0
BraA10t42890Z Brassica rapa HOM05D003501 ORTHO05D004388 4.3e-30 135.6 189 45.0
Cc07_g02990 Coffea canephora HOM05D003501 ORTHO05D004388 4.3e-30 135.6 191 44.0
Gohir.A09G099800 Gossypium hirsutum HOM05D003501 ORTHO05D004388 5.6e-30 135.2 190 43.7
SMO194G0041 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 5.6e-30 135.2 76 86.8
PGSC0003DMG400021209 Solanum tuberosum HOM05D003501 ORTHO05D004388 5.6e-30 135.2 190 43.7
AL6G33080 Arabidopsis lyrata HOM05D003501 ORTHO05D004388 7.3e-30 134.8 189 44.4
Haze_23560 Corylus avellana HOM05D003501 ORTHO05D004388 7.3e-30 134.8 190 41.6
Glyma.13G179100 Glycine max HOM05D003501 ORTHO05D004388 7.3e-30 134.8 190 43.7
CsaV3_1G043830 Cucumis sativus L. HOM05D003501 ORTHO05D004388 9.5e-30 134.4 189 42.9
Peaxi162Scf00683g00345 Petunia axillaris HOM05D003501 ORTHO05D004388 9.5e-30 134.4 190 43.2
THA.LOC104809596 Tarenaya hassleriana HOM05D003501 ORTHO05D004388 9.5e-30 134.4 189 43.9
MELO3C015060.2 Cucumis melo HOM05D003501 ORTHO05D004388 1.6e-29 133.7 189 42.3
COL.COLO4_25421 Corchorus olitorius HOM05D003501 ORTHO05D004388 2.1e-29 133.3 188 44.7
Cfa010173 Carpinus fangiana HOM05D003501 ORTHO05D004388 3.6e-29 132.5 190 41.1
Glyma.01G143200 Glycine max HOM05D003501 ORTHO05D004388 3.6e-29 132.5 190 42.1
AT5G22100 Arabidopsis thaliana HOM05D003501 ORTHO05D004388 4.7e-29 132.1 189 42.9
GSVIVG01032606001 Vitis vinifera HOM05D003501 ORTHO05D004388 4.7e-29 132.1 191 43.5
Actinidia15653 Actinidia chinensis HOM05D003501 ORTHO05D004388 8.1e-29 131.3 115 60.0
A08p05420 Brassica napus HOM05D003501 ORTHO05D004388 8.1e-29 131.3 215 40.9
ClCG03G012190 Citrullus lanatus HOM05D003501 ORTHO05D004388 8.1e-29 131.3 189 41.8
Duzib168G1975 Durio zibethinus HOM05D003501 ORTHO05D004388 8.1e-29 131.3 190 43.7
Gohir.D09G099200 Gossypium hirsutum HOM05D003501 ORTHO05D004388 1.1e-28 131.0 190 43.2
Gorai.006G116200 Gossypium raimondii HOM05D003501 ORTHO05D004388 1.1e-28 131.0 190 43.2
Thecc.09G271900 Theobroma cacao HOM05D003501 ORTHO05D004388 1.4e-28 130.6 189 43.4
Psat7g031640 Pisum sativum HOM05D003501 ORTHO05D004388 3.1e-28 129.4 190 41.1
Carub.0006s1974 Capsella rubella HOM05D003501 ORTHO05D004388 4.0e-28 129.0 189 42.9
Lj2g0023176 Lotus japonicus HOM05D003501 ORTHO05D004388 5.2e-28 128.6 190 41.1
DCAR_025365 Daucus carota HOM05D003501 ORTHO05D004388 1.5e-27 127.1 116 59.5
CAN.G953.11 Capsicum annuum HOM05D003501 ORTHO05D004388 2.0e-27 126.7 190 41.6
Ca_12888_v3 Cicer arietinum L. HOM05D003501 ORTHO05D004388 2.0e-27 126.7 190 42.1
Medtr8g098715 Medicago truncatula HOM05D003501 ORTHO05D004388 2.6e-27 126.3 190 41.6
SHI03441 Sapria himalayana HOM05D003501 ORTHO05D004388 3.4e-27 125.9 190 38.9
TPR.G12888 Trifolium pratense HOM05D003501 ORTHO05D004388 4.4e-27 125.6 190 41.1
C08p05880 Brassica napus HOM05D003501 ORTHO05D004388 9.9e-27 124.4 114 58.8
SalBow8G4485 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.2e-26 123.2 187 41.2
Cre09.g400367 Chlamydomonas reinhardtii HOM05D003501 ORTHO05D004388 8.4e-26 121.3 177 41.2
PGSC0003DMG400006605 Solanum tuberosum HOM05D003501 ORTHO05D004388 3.2e-25 119.4 114 55.3
MD05G1254500 Malus domestica HOM05D003501 ORTHO05D004388 6.0e-24 115.2 178 40.4
CARHR072400 Cardamine hirsuta HOM05D003501 ORTHO05D004388 1.7e-23 113.6 103 57.3
QL05p062772 Quercus lobata HOM05D003501 ORTHO05D004388 3.6e-21 105.9 171 38.6
Haze_27241 Corylus avellana HOM05D003501 ORTHO05D004388 2.6e-19 99.8 119 41.2
EL10Ac6g13118 Beta vulgaris HOM05D003501 ORTHO05D004388 1.4e-17 94.0 179 35.8
Nitab4.5_0010866g0010 Nicotiana tabacum HOM05D003501 ORTHO05D004388 4.6e-16 89.0 180 34.4
PRCOL_00006339 Prasinoderma coloniale HOM05D003501 ORTHO05D004388 4.6e-16 89.0 136 40.4
SMO169G0251 Selaginella moellendorffii HOM05D003501 ORTHO05D004388 7.8e-16 88.2 54 85.2
Thhalv10029476m.g Eutrema salsugineum HOM05D003501 ORTHO05D004388 2.3e-15 86.7 134 40.3
SalBow1G0615 Salvia bowleyana HOM05D003501 ORTHO05D004388 2.3e-15 86.7 187 35.3
Prupe.6G112100 Prunus persica HOM05D003501 ORTHO05D004388 1.9e-14 83.6 101 51.5
HPP92_000050 Vanilla planifolia HOM05D003501 ORTHO05D004388 7.3e-14 81.6 119 42.0
Prupe.6G111200 Prunus persica HOM05D003501 ORTHO05D004388 1.6e-13 80.5 173 35.8
CDE12G0385 Ceratophyllum demersum HOM05D003501 ORTHO05D004388 4.8e-13 79.0 95 48.4
Phvul.002G299004 Phaseolus vulgaris HOM05D003501 ORTHO05D004388 1.8e-12 77.0 126 36.5
MCO16G220 Micromonas commoda HOM05D003501 ORTHO05D004388 1.5e-11 73.9 74 48.6
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 9.9e-11 71.2 50 74.0
HPP92_000031 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.4e-09 66.6 87 43.7
Cfa022309 Carpinus fangiana HOM05D003501 ORTHO05D004388 6.0e-08 62.0 114 33.3
Glyma.07G212600 Glycine max HOM05D003501 ORTHO05D004388 1.0e-07 61.2 46 65.2
MD11G1147100 Malus domestica HOM05D003501 ORTHO05D004388 1.0e-07 61.2 55 47.3
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 3.3e-06 56.2 143 33.6
HPP92_028228 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.3e-06 56.2 35 80.0


User provided reference genes

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