Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.8e-224 781.2 389 100.0
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.6e-110 402.5 361 64.5
SMO351G0667 Selaginella moellendorffii HOM05D020112 ORTHO05D377457 2.9e-83 313.2 347 59.4
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.5e-76 290.8 167 90.4
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.4e-24 118.2 201 41.8
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 1.7e-19 101.3 205 37.6
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 3.9e-19 100.1 188 39.4
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 5.0e-19 99.8 218 36.2
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 6.6e-19 99.4 216 36.6
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.1e-18 98.6 206 36.4
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.5e-18 98.2 205 36.6
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 1.5e-18 98.2 205 36.6
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 2.5e-18 97.4 205 36.6
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.6e-18 96.3 205 36.6
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 5.6e-18 96.3 205 36.6
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.2e-17 95.1 231 33.8
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 1.6e-17 94.7 205 36.6
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 1.6e-17 94.7 129 48.1
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 2.1e-17 94.4 205 35.1
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.8e-17 94.0 205 36.1
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 3.6e-17 93.6 210 36.2
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 3.6e-17 93.6 210 35.2
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 3.6e-17 93.6 210 35.2
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 4.7e-17 93.2 205 35.6
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 4.7e-17 93.2 213 36.6
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.7e-17 93.2 205 35.6
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 4.7e-17 93.2 205 37.1
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 6.2e-17 92.8 205 36.1
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 6.2e-17 92.8 194 36.6
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.2e-17 92.8 205 35.6
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 6.2e-17 92.8 205 35.1
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 8.1e-17 92.4 217 35.5
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 1.1e-16 92.0 205 35.1
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.1e-16 92.0 210 34.8
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.1e-16 92.0 205 36.6
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.1e-16 92.0 205 34.6
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.4e-16 91.7 204 35.8
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 1.4e-16 91.7 210 35.2
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.4e-16 91.7 178 37.6
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 1.8e-16 91.3 203 36.5
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 1.8e-16 91.3 204 34.8
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 1.8e-16 91.3 210 34.8
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 2.3e-16 90.9 135 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.1e-16 90.5 181 38.7
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 4.0e-16 90.1 218 33.5
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 4.0e-16 90.1 205 33.7
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 4.0e-16 90.1 203 36.0
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 5.2e-16 89.7 214 33.2
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 5.2e-16 89.7 217 35.0
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 5.2e-16 89.7 142 43.7
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 5.2e-16 89.7 211 33.2
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 6.8e-16 89.4 182 39.0
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 6.8e-16 89.4 182 39.0
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 6.8e-16 89.4 210 34.3
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 6.8e-16 89.4 201 35.8
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 8.9e-16 89.0 206 33.5
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 8.9e-16 89.0 182 36.8
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.2e-15 88.6 164 38.4
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 1.5e-15 88.2 169 37.3
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 1.5e-15 88.2 169 37.3
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 2.0e-15 87.8 182 39.0
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 2.0e-15 87.8 210 33.8
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 2.0e-15 87.8 221 33.0
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 2.0e-15 87.8 205 35.6
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.6e-15 87.4 222 33.8
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 2.6e-15 87.4 187 36.4
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 2.6e-15 87.4 223 33.6
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 2.6e-15 87.4 223 33.6
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 2.6e-15 87.4 179 35.2
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 3.4e-15 87.0 209 36.8
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 3.4e-15 87.0 179 36.9
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.4e-15 87.0 226 34.1
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 3.4e-15 87.0 156 39.1
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.4e-15 86.7 204 34.8
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 4.4e-15 86.7 217 34.6
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 5.8e-15 86.3 156 40.4
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 5.8e-15 86.3 222 32.4
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 5.8e-15 86.3 212 35.4
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 9.8e-15 85.5 132 43.2
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 9.8e-15 85.5 211 34.1
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.3e-14 85.1 147 40.1
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.3e-14 85.1 144 41.7
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.3e-14 85.1 144 41.7
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.3e-14 85.1 182 36.3
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.3e-14 85.1 231 31.6
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.7e-14 84.7 190 36.3
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 1.7e-14 84.7 182 38.5
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 2.2e-14 84.3 224 33.9
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.9e-14 84.0 145 40.0
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 2.9e-14 84.0 173 37.0
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-14 84.0 217 32.3
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 2.9e-14 84.0 217 32.3
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 3.7e-14 83.6 212 33.0
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 3.7e-14 83.6 149 38.9
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 3.7e-14 83.6 178 37.1
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 6.4e-14 82.8 231 31.2
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.1e-13 82.0 160 37.5
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.1e-13 82.0 128 42.2
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 1.4e-13 81.6 147 38.8
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 1.9e-13 81.3 181 35.4
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 2.4e-13 80.9 191 35.1
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 2.4e-13 80.9 205 33.2
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 3.2e-13 80.5 222 32.4
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 3.2e-13 80.5 221 32.6
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 4.1e-13 80.1 172 35.5
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 5.4e-13 79.7 209 32.1
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 5.4e-13 79.7 231 31.2
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 7.1e-13 79.3 209 32.1
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 9.2e-13 79.0 181 36.5
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 1.6e-12 78.2 192 33.3
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 1.6e-12 78.2 209 31.6
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 1.6e-12 78.2 209 31.6
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 2.1e-12 77.8 212 34.0
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 2.7e-12 77.4 158 36.7
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 3.5e-12 77.0 217 32.7
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 4.6e-12 76.6 125 39.2
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 7.8e-12 75.9 241 30.7
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.7e-11 74.7 158 36.1
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.7e-11 74.7 212 32.5
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.3e-11 74.3 217 32.3
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.9e-11 73.6 209 31.6
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 6.6e-11 72.8 122 43.4
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 8.6e-11 72.4 209 31.1
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 1.5e-10 71.6 209 31.1
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.9e-10 71.2 160 35.0
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 4.3e-10 70.1 248 29.4
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 4.3e-10 70.1 122 36.1
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 4.3e-10 70.1 209 31.1
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 7.3e-10 69.3 218 31.2
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.2e-09 68.6 159 37.7
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 1.6e-09 68.2 94 46.8
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.6e-09 68.2 124 39.5
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 2.1e-09 67.8 124 38.7
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 2.8e-09 67.4 130 39.2
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 4.7e-09 66.6 125 37.6
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 4.0e-08 63.5 147 34.7
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 5.2e-08 63.2 248 28.2
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 5.2e-08 63.2 128 33.6
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 8.9e-08 62.4 120 37.5
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 8.9e-08 62.4 140 35.0
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.2e-07 62.0 136 36.8
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 1.2e-07 62.0 95 42.1
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 1.2e-07 62.0 95 42.1
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.0e-07 61.2 120 37.5
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 7.6e-07 59.3 115 34.8
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 7.6e-07 59.3 118 37.3
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 9.9e-07 58.9 87 43.7
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.7e-06 58.2 145 32.4
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.7e-06 58.2 86 44.2
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 6.4e-06 56.2 99 41.4


User provided reference genes

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