Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI53714 Sapria himalayana HOM05D004044 ORTHO05D004841 1.0e-44 183.0 87 100.0
SHI51478 Sapria himalayana HOM05D004044 ORTHO05D004841 1.9e-30 135.6 74 87.8
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 8.9e-25 116.7 67 82.1
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 1.2e-24 116.3 67 80.6
BcaB05g22479 Brassica carinata HOM05D004044 ORTHO05D004841 1.2e-24 116.3 67 79.1
BcaC03g14038 Brassica carinata HOM05D004044 ORTHO05D004841 1.2e-24 116.3 67 79.1
A02p07330 Brassica napus HOM05D000115 ORTHO05D004841 1.2e-24 116.3 67 79.1
C02p12800 Brassica napus HOM05D004044 ORTHO05D004841 1.2e-24 116.3 67 79.1
BolC2t07375H Brassica oleracea HOM05D000115 ORTHO05D004841 1.2e-24 116.3 67 79.1
BraA02t05814Z Brassica rapa HOM05D004044 ORTHO05D004841 1.2e-24 116.3 67 79.1
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 1.2e-24 116.3 67 80.6
Aa31LG1G11990 Aethionema arabicum HOM05D004044 ORTHO05D004841 1.5e-24 115.9 67 79.1
Thhalv10014822m.g Eutrema salsugineum HOM05D004044 ORTHO05D004841 1.5e-24 115.9 67 79.1
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 1.5e-24 115.9 67 79.1
Potri.001G377200 Populus trichocarpa HOM05D004044 ORTHO05D004841 4.4e-24 114.4 67 77.6
AT5G59180 Arabidopsis thaliana HOM05D004044 ORTHO05D004841 5.8e-24 114.0 67 77.6
Manes.02G127300 Manihot esculenta HOM05D004044 ORTHO05D004841 5.8e-24 114.0 67 77.6
A10p16340 Brassica napus HOM05D000115 ORTHO05D004841 9.9e-24 113.2 67 76.1
BraA10t43718Z Brassica rapa HOM05D004044 ORTHO05D004841 9.9e-24 113.2 67 76.1
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 1.3e-23 112.8 67 77.6
Psat7g090040 Pisum sativum HOM05D004044 ORTHO05D004841 1.3e-23 112.8 67 74.6
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 1.3e-23 112.8 67 77.6
arahy.Tifrunner.gnm1.ann1.3AM9HW Arachis hypogaea HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
arahy.Tifrunner.gnm1.ann1.4J3X95 Arachis hypogaea HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
Cfa017837 Carpinus fangiana HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 77.6
Ca_18265_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
ClCG01G008130 Citrullus lanatus HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 77.6
COL.COLO4_35818 Corchorus olitorius HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 77.6
Haze_00336 Corylus avellana HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 77.6
CsaV3_5G020160 Cucumis sativus L. HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 77.6
Duzib150G0800 Durio zibethinus HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 77.6
Glyma.05G130300 Glycine max HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
Glyma.08G085100 Glycine max HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
Lalb_Chr03g0035651 Lupinus albus HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
Phvul.002G193600 Phaseolus vulgaris HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
TPR.G4935 Trifolium pratense HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
VMungo0251G1187 Vigna mungo HOM05D004044 ORTHO05D004841 1.7e-23 112.5 67 74.6
CiPaw.14G064200 Carya illinoinensis HOM05D004044 ORTHO05D004841 2.2e-23 112.1 67 76.1
Gohir.A08G001500 Gossypium hirsutum HOM05D004044 ORTHO05D004841 2.2e-23 112.1 67 76.1
Gorai.004G006200 Gossypium raimondii HOM05D004044 ORTHO05D004841 2.2e-23 112.1 67 76.1
Lalb_Chr19g0130021 Lupinus albus HOM05D004044 ORTHO05D004841 2.2e-23 112.1 67 73.1
Thecc.09G313400 Theobroma cacao HOM05D004044 ORTHO05D004841 2.2e-23 112.1 67 76.1
VMungo0647G0323 Vigna mungo HOM05D004044 ORTHO05D004841 2.2e-23 112.1 67 73.1
Ca_04445_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 2.9e-23 111.7 67 73.1
Medtr4g096810 Medicago truncatula HOM05D004044 ORTHO05D004841 2.9e-23 111.7 67 73.1
Cpa.g.sc81.63 Carica papaya HOM05D004044 ORTHO05D004841 3.7e-23 111.3 67 76.1
FAN02G2699 Fragaria x ananassa HOM05D004044 ORTHO05D004841 4.9e-23 110.9 67 76.1
FAN09G1115 Fragaria x ananassa HOM05D004044 ORTHO05D004841 4.9e-23 110.9 67 76.1
Sed0006109 Sechium edule HOM05D004044 ORTHO05D004841 4.9e-23 110.9 67 74.6
BolC9t57997H Brassica oleracea HOM05D004044 ORTHO05D004841 6.4e-23 110.5 67 74.6
Gohir.D08G012200 Gossypium hirsutum HOM05D004044 ORTHO05D004841 6.4e-23 110.5 67 74.6
MD14G1245600 Malus domestica HOM05D004044 ORTHO05D004841 6.4e-23 110.5 67 76.1
PGR102G0470 Punica granatum HOM05D004044 ORTHO05D004841 6.4e-23 110.5 67 76.1
Atru.chr13.1634 Acer truncatum HOM05D004044 ORTHO05D004841 8.3e-23 110.2 67 74.6
Atru.chr3.4016 Acer truncatum HOM05D004044 ORTHO05D004841 8.3e-23 110.2 67 74.6
BcaC04g19817 Brassica carinata HOM05D004044 ORTHO05D004841 8.3e-23 110.2 67 74.6
FvH4_6g26920 Fragaria vesca HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
FAN05G0006 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
FAN09G4540 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
FAN14G5530 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
Prupe.4G244700 Prunus persica HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
Prupe.5G243500 Prunus persica HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
RcHm_v2.0_Chr2g0128671 Rosa chinensis HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
Sed0005531 Sechium edule HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 73.1
TWI75G1574 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 1.1e-22 109.8 67 74.6
MD06G1239600 Malus domestica HOM05D004044 ORTHO05D004841 1.4e-22 109.4 67 74.6
QL12p009539 Quercus lobata HOM05D004044 ORTHO05D004841 1.4e-22 109.4 67 73.1
A03p60060 Brassica napus HOM05D004044 ORTHO05D004841 1.9e-22 109.0 67 74.6
CAN.G141.22 Capsicum annuum HOM05D004044 ORTHO05D004841 2.4e-22 108.6 67 73.1
Nitab4.5_0000839g0100 Nicotiana tabacum HOM05D004044 ORTHO05D004841 2.4e-22 108.6 67 73.1
Nitab4.5_0005607g0010 Nicotiana tabacum HOM05D004044 ORTHO05D004841 2.4e-22 108.6 67 73.1
Solyc06g005790.3 Solanum lycopersicum HOM05D004044 ORTHO05D004841 2.4e-22 108.6 67 73.1
Lsat_1_v5_gn_5_161301 Lactuca sativa HOM05D004044 ORTHO05D004841 3.2e-22 108.2 67 74.6
TWI31G1060 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 3.2e-22 108.2 67 71.6
A03p11890 Brassica napus HOM05D000115 ORTHO05D004841 4.1e-22 107.8 67 73.1
BraA03t10501Z Brassica rapa HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 73.1
CSS0028029 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 73.1
Cc01_g13450 Coffea canephora HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 73.1
Migut.K00397 Erythranthe guttata HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 71.6
Lj1A145T59 Lonicera japonica HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 73.1
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 73.1
Rhsim10G0155100 Rhododendron simsii HOM05D004044 ORTHO05D004841 4.1e-22 107.8 67 73.1
BolC3t13845H Brassica oleracea HOM05D004044 ORTHO05D004841 5.4e-22 107.5 67 71.6
Hma1.2p1_0274F.1_g110460 Hydrangea macrophylla HOM05D004044 ORTHO05D004841 7.1e-22 107.1 67 71.6
CANSAT25G0006 Cannabis sativa HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 71.6
CANSAT25G0085 Cannabis sativa HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 71.6
Ciclev10029380m.g Citrus clementina HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 70.1
Dinv17058 Davidia involucrata HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 71.6
Dinv43002 Davidia involucrata HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 71.6
Dinv43095 Davidia involucrata HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 71.6
vmacro14563 Vaccinium macrocarpon HOM05D004044 ORTHO05D004841 9.2e-22 106.7 67 71.6
MSTRG.16970 Avicennia marina HOM05D004044 ORTHO05D004841 1.2e-21 106.3 67 70.1
MSTRG.20492 Avicennia marina HOM05D004044 ORTHO05D004841 1.2e-21 106.3 67 70.1
C03p13980 Brassica napus HOM05D004044 ORTHO05D004841 1.2e-21 106.3 64 76.6
GSVIVG01024869001 Vitis vinifera HOM05D004044 ORTHO05D004841 1.2e-21 106.3 67 70.1
Actinidia23914 Actinidia chinensis HOM05D004044 ORTHO05D004841 2.1e-21 105.5 67 70.1
Ah.08g220220 Amaranthus hybridus HOM05D000115 ORTHO05D000464 2.1e-21 105.5 67 73.1
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 2.7e-21 105.1 67 70.1
Lj6g0006771 Lotus japonicus HOM05D004044 ORTHO05D004841 2.7e-21 105.1 67 70.1
Rhsim01G0232900 Rhododendron simsii HOM05D004044 ORTHO05D004841 2.7e-21 105.1 67 70.1
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 3.5e-21 104.8 67 71.6
AUR62001726 Chenopodium quinoa HOM05D000001 ORTHO05D000003 4.6e-21 104.4 67 71.6
EL10Ac7g16082 Beta vulgaris HOM05D004044 ORTHO05D004841 6.0e-21 104.0 67 70.1
Hund04913 Selenicereus undatus HOM05D004044 ORTHO05D004841 6.0e-21 104.0 67 71.6
Nn1g09527 Nelumbo nucifera HOM05D004044 ORTHO05D004841 7.8e-21 103.6 67 68.7
SGA_v2.0_scaffold183G39883 Striga asiatica HOM05D004044 ORTHO05D004841 7.8e-21 103.6 67 67.2
TAR369G0144 Trochodendron aralioides HOM05D004044 ORTHO05D004841 7.8e-21 103.6 67 68.7
TAR623G0707 Trochodendron aralioides HOM05D004044 ORTHO05D004841 7.8e-21 103.6 67 68.7
PSO541G5855 Papaver somniferum HOM05D004044 ORTHO05D004841 1.0e-20 103.2 67 67.2
PSO675G0394 Papaver somniferum HOM05D004044 ORTHO05D004841 1.0e-20 103.2 67 67.2
PSO675G2284 Papaver somniferum HOM05D004044 ORTHO05D004841 1.0e-20 103.2 67 67.2
PSO675G7761 Papaver somniferum HOM05D004044 ORTHO05D004841 1.0e-20 103.2 67 67.2
Gorai.009G096000 Gossypium raimondii HOM05D004044 ORTHO05D004841 1.3e-20 102.8 62 77.4
Nitab4.5_0000102g0420 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.3e-20 102.8 62 75.8
Nitab4.5_0009356g0020 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.3e-20 102.8 62 75.8
Sopen06g001770 Solanum pennellii HOM05D004044 ORTHO05D004841 1.3e-20 102.8 62 75.8
PGSC0003DMG400020826 Solanum tuberosum HOM05D004044 ORTHO05D004841 1.3e-20 102.8 62 75.8
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.3e-20 102.8 65 69.2
Gohir.A05G092600 Gossypium hirsutum HOM05D004044 ORTHO05D004841 2.3e-20 102.1 62 74.2
HanXRQChr09g0248471 Helianthus annuus HOM05D004044 ORTHO05D004841 2.3e-20 102.1 62 75.8
HanXRQChr09g0256561 Helianthus annuus HOM05D004044 ORTHO05D004841 2.3e-20 102.1 62 75.8
Zm00001eb287570 Zea mays HOM05D004044 ORTHO05D004841 2.3e-20 102.1 67 68.7
AUR62028438 Chenopodium quinoa HOM05D004044 ORTHO05D004841 3.0e-20 101.7 65 70.8
Os05g0400700 Oryza sativa ssp. japonica HOM05D004044 ORTHO05D004841 3.0e-20 101.7 67 67.2
CDE02G2400 Ceratophyllum demersum HOM05D004044 ORTHO05D004841 3.9e-20 101.3 67 65.7
ECA247G2777 Erigeron canadensis HOM05D004044 ORTHO05D004841 3.9e-20 101.3 62 74.2
MBI05_g02651_MAGBIO Magnolia biondii HOM05D004044 ORTHO05D004841 3.9e-20 101.3 67 67.2
Hund18882 Selenicereus undatus HOM05D004044 ORTHO05D004841 3.9e-20 101.3 67 68.7
BcaB01g04613 Brassica carinata HOM05D004044 ORTHO05D004841 5.1e-20 100.9 62 74.2
BcaB01g04614 Brassica carinata HOM05D004044 ORTHO05D004841 5.1e-20 100.9 62 75.8
SHI53421 Sapria himalayana HOM05D004044 ORTHO05D004841 8.6e-20 100.1 47 97.9
BcaB08g36284 Brassica carinata HOM05D004044 ORTHO05D004841 2.5e-19 98.6 69 66.7
Glyma.14G007900 Glycine max HOM05D004044 ORTHO05D004841 2.5e-19 98.6 67 67.2
AUR62020050 Chenopodium quinoa HOM05D004044 ORTHO05D004841 3.3e-19 98.2 62 72.6
Sabra16G0248500 Salix brachista HOM05D004044 ORTHO05D004841 3.3e-19 98.2 77 64.9
DCAR_007422 Daucus carota HOM05D004044 ORTHO05D004841 7.3e-19 97.1 62 69.4
unitig_0.g646 Utricularia gibba HOM05D004044 ORTHO05D004841 9.5e-19 96.7 62 67.7
ECA248G0832 Erigeron canadensis HOM05D004044 ORTHO05D004841 1.2e-18 96.3 62 71.0
ATR0697G111 Amborella trichopoda HOM05D004044 ORTHO05D004841 2.8e-18 95.1 66 63.6
SEGI_41420 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 2.8e-18 95.1 62 71.0
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 6.2e-18 94.0 67 59.7
SMO367G0145 Selaginella moellendorffii HOM05D004044 ORTHO05D004841 6.2e-18 94.0 66 62.1
SHI49599 Sapria himalayana HOM05D004044 ORTHO05D004841 8.1e-18 93.6 47 93.6
Mapoly0121s0023 Marchantia polymorpha HOM05D004044 ORTHO05D004841 1.1e-17 93.2 66 60.6
Pp3c6_9100 Physcomitrium patens HOM05D004044 ORTHO05D004841 2.4e-17 92.0 64 60.9
Duzib147G0502 Durio zibethinus HOM05D004044 ORTHO05D004841 3.1e-17 91.7 67 62.7
FAN24G0219 Fragaria x ananassa HOM05D004044 ORTHO05D000111 5.2e-17 90.9 68 64.7
AagrBONN_evm.TU.Sc2ySwM_344.2510 Anthoceros agrestis HOM05D004044 ORTHO05D004841 6.8e-17 90.5 67 56.7
FvH4_2g24550 Fragaria vesca HOM05D004044 ORTHO05D004841 8.9e-17 90.1 67 64.2
Oeu007669.1 Olea europaea HOM05D004044 ORTHO05D004841 8.9e-17 90.1 61 65.6
SEGI_11642 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 2.0e-16 89.0 62 66.1
FAN15G0434 Fragaria x ananassa HOM05D004044 ORTHO05D004841 3.4e-16 88.2 67 64.2
RcHm_v2.0_Chr6g0292371 Rosa chinensis HOM05D004044 ORTHO05D004841 1.3e-15 86.3 68 60.3
CSS0043288 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 8.7e-12 73.6 42 76.2
Lj2g0015661 Lotus japonicus HOM05D004044 ORTHO05D004841 1.1e-11 73.2 42 73.8
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 1.5e-11 72.8 66 48.5
SHI32325 Sapria himalayana HOM05D004044 ORTHO05D004841 3.6e-10 68.2 44 68.2
FAN27G1470 Fragaria x ananassa HOM05D004044 ORTHO05D000111 3.1e-09 65.1 50 64.0
Peaxi162Scf00481g00055 Petunia axillaris HOM05D004044 ORTHO05D004841 9.9e-08 60.1 46 60.9
MELO3C027194.2 Cucumis melo HOM05D004044 ORTHO05D004841 2.9e-07 58.5 33 78.8
Eucgr.J01999 Eucalyptus grandis HOM05D004044 ORTHO05D004841 2.9e-07 58.5 33 78.8
MCO11G406 Micromonas commoda HOM05D004044 ORTHO05D004841 4.9e-07 57.8 67 34.3
SHI51733 Sapria himalayana HOM05D004044 ORTHO05D004841 1.4e-06 56.2 27 96.3
Migut.K00396 Erythranthe guttata HOM05D004044 ORTHO05D004841 4.2e-06 54.7 31 74.2
Cre16.g667750 Chlamydomonas reinhardtii HOM05D004044 ORTHO05D004841 5.4e-06 54.3 65 33.8


User provided reference genes

Program Settings