Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI53421 Sapria himalayana HOM05D004044 ORTHO05D004841 1.6e-39 165.6 81 100.0
SHI49599 Sapria himalayana HOM05D004044 ORTHO05D004841 1.5e-29 132.5 67 94.0
SHI51478 Sapria himalayana HOM05D004044 ORTHO05D004841 2.8e-28 128.3 72 86.1
Aa31LG1G11990 Aethionema arabicum HOM05D004044 ORTHO05D004841 2.0e-23 112.1 88 67.0
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 3.5e-23 111.3 88 67.0
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 3.5e-23 111.3 88 67.0
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 3.5e-23 111.3 88 67.0
BcaB05g22479 Brassica carinata HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
BcaC03g14038 Brassica carinata HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
A02p07330 Brassica napus HOM05D000115 ORTHO05D004841 4.6e-23 110.9 88 65.9
C02p12800 Brassica napus HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
Thhalv10014822m.g Eutrema salsugineum HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 4.6e-23 110.9 88 65.9
Potri.001G377200 Populus trichocarpa HOM05D004044 ORTHO05D004841 5.9e-23 110.5 88 65.9
Manes.02G127300 Manihot esculenta HOM05D004044 ORTHO05D004841 7.8e-23 110.2 88 65.9
Psat7g090040 Pisum sativum HOM05D004044 ORTHO05D004841 1.0e-22 109.8 88 64.8
AT5G59180 Arabidopsis thaliana HOM05D004044 ORTHO05D004841 1.7e-22 109.0 88 64.8
arahy.Tifrunner.gnm1.ann1.3AM9HW Arachis hypogaea HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
arahy.Tifrunner.gnm1.ann1.4J3X95 Arachis hypogaea HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
Cfa017837 Carpinus fangiana HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 65.9
Ca_04445_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
Ca_18265_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
ClCG01G008130 Citrullus lanatus HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 65.9
Haze_00336 Corylus avellana HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 65.9
CsaV3_5G020160 Cucumis sativus L. HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 65.9
Glyma.05G130300 Glycine max HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
Glyma.08G085100 Glycine max HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
Lalb_Chr03g0035651 Lupinus albus HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
Medtr4g096810 Medicago truncatula HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
Phvul.002G193600 Phaseolus vulgaris HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
TPR.G4935 Trifolium pratense HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
VMungo0251G1187 Vigna mungo HOM05D004044 ORTHO05D004841 2.3e-22 108.6 88 63.6
CiPaw.14G064200 Carya illinoinensis HOM05D004044 ORTHO05D004841 3.0e-22 108.2 88 64.8
Lalb_Chr19g0130021 Lupinus albus HOM05D004044 ORTHO05D004841 3.0e-22 108.2 88 62.5
Thecc.09G313400 Theobroma cacao HOM05D004044 ORTHO05D004841 3.9e-22 107.8 88 63.6
VMungo0647G0323 Vigna mungo HOM05D004044 ORTHO05D004841 3.9e-22 107.8 88 62.5
Cpa.g.sc81.63 Carica papaya HOM05D004044 ORTHO05D004841 5.0e-22 107.5 88 64.8
A10p16340 Brassica napus HOM05D000115 ORTHO05D004841 6.6e-22 107.1 88 63.6
Duzib150G0800 Durio zibethinus HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 64.8
FAN02G2699 Fragaria x ananassa HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 64.8
FAN09G1115 Fragaria x ananassa HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 64.8
Lj6g0006771 Lotus japonicus HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 62.5
MD06G1239600 Malus domestica HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 64.8
MD14G1245600 Malus domestica HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 64.8
Sed0006109 Sechium edule HOM05D004044 ORTHO05D004841 6.6e-22 107.1 88 63.6
Gohir.A08G001500 Gossypium hirsutum HOM05D004044 ORTHO05D004841 8.6e-22 106.7 88 63.6
Gorai.004G006200 Gossypium raimondii HOM05D004044 ORTHO05D004841 8.6e-22 106.7 88 63.6
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 8.6e-22 106.7 88 61.4
Atru.chr13.1634 Acer truncatum HOM05D004044 ORTHO05D004841 1.1e-21 106.3 88 63.6
PGR102G0470 Punica granatum HOM05D004044 ORTHO05D004841 1.1e-21 106.3 88 63.6
FvH4_6g26920 Fragaria vesca HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
FAN05G0006 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
FAN09G4540 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
FAN14G5530 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
Prupe.4G244700 Prunus persica HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
Prupe.5G243500 Prunus persica HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
RcHm_v2.0_Chr2g0128671 Rosa chinensis HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
Sed0005531 Sechium edule HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 62.5
TWI75G1574 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 1.5e-21 105.9 88 63.6
QL12p009539 Quercus lobata HOM05D004044 ORTHO05D004841 1.9e-21 105.5 88 62.5
Gohir.D08G012200 Gossypium hirsutum HOM05D004044 ORTHO05D004841 2.5e-21 105.1 88 62.5
Atru.chr3.4016 Acer truncatum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
CAN.G141.22 Capsicum annuum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
Nitab4.5_0000102g0420 Nicotiana tabacum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
Nitab4.5_0000839g0100 Nicotiana tabacum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
Nitab4.5_0005607g0010 Nicotiana tabacum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
Solyc06g005790.3 Solanum lycopersicum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
Sopen06g001770 Solanum pennellii HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
PGSC0003DMG400020826 Solanum tuberosum HOM05D004044 ORTHO05D004841 3.3e-21 104.8 88 62.5
TWI31G1060 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 4.3e-21 104.4 88 61.4
CSS0028029 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 5.6e-21 104.0 88 62.5
Cc01_g13450 Coffea canephora HOM05D004044 ORTHO05D004841 5.6e-21 104.0 88 62.5
Migut.K00397 Erythranthe guttata HOM05D004044 ORTHO05D004841 5.6e-21 104.0 88 61.4
Hma1.2p1_0274F.1_g110460 Hydrangea macrophylla HOM05D004044 ORTHO05D004841 5.6e-21 104.0 88 62.5
Lsat_1_v5_gn_5_161301 Lactuca sativa HOM05D004044 ORTHO05D004841 5.6e-21 104.0 88 62.5
Lj1A145T59 Lonicera japonica HOM05D004044 ORTHO05D004841 5.6e-21 104.0 88 62.5
ECA247G2777 Erigeron canadensis HOM05D004044 ORTHO05D004841 9.5e-21 103.2 88 61.4
BcaB08g36284 Brassica carinata HOM05D004044 ORTHO05D004841 1.2e-20 102.8 90 60.0
BraA02t05814Z Brassica rapa HOM05D004044 ORTHO05D004841 1.2e-20 102.8 85 63.5
Dinv17058 Davidia involucrata HOM05D004044 ORTHO05D004841 1.2e-20 102.8 88 61.4
Dinv43002 Davidia involucrata HOM05D004044 ORTHO05D004841 1.2e-20 102.8 88 61.4
Dinv43095 Davidia involucrata HOM05D004044 ORTHO05D004841 1.2e-20 102.8 88 61.4
vmacro14563 Vaccinium macrocarpon HOM05D004044 ORTHO05D004841 1.2e-20 102.8 88 61.4
MSTRG.16970 Avicennia marina HOM05D004044 ORTHO05D004841 1.6e-20 102.4 88 60.2
MSTRG.20492 Avicennia marina HOM05D004044 ORTHO05D004841 1.6e-20 102.4 88 60.2
BolC2t07375H Brassica oleracea HOM05D000115 ORTHO05D004841 1.6e-20 102.4 102 56.9
HanXRQChr09g0248471 Helianthus annuus HOM05D004044 ORTHO05D004841 1.6e-20 102.4 88 61.4
HanXRQChr09g0256561 Helianthus annuus HOM05D004044 ORTHO05D004841 1.6e-20 102.4 88 61.4
GSVIVG01024869001 Vitis vinifera HOM05D004044 ORTHO05D004841 1.6e-20 102.4 88 60.2
Actinidia23914 Actinidia chinensis HOM05D004044 ORTHO05D004841 2.8e-20 101.7 88 60.2
Ah.08g220220 Amaranthus hybridus HOM05D000115 ORTHO05D000464 3.6e-20 101.3 88 61.4
CANSAT25G0006 Cannabis sativa HOM05D004044 ORTHO05D004841 3.6e-20 101.3 88 60.2
CANSAT25G0085 Cannabis sativa HOM05D004044 ORTHO05D004841 3.6e-20 101.3 88 60.2
Ciclev10029380m.g Citrus clementina HOM05D004044 ORTHO05D004841 3.6e-20 101.3 88 59.1
Rhsim01G0232900 Rhododendron simsii HOM05D004044 ORTHO05D004841 3.6e-20 101.3 88 60.2
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 6.2e-20 100.5 88 61.4
AUR62001726 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.0e-20 100.1 88 60.2
AUR62020050 Chenopodium quinoa HOM05D004044 ORTHO05D004841 8.0e-20 100.1 88 60.2
Sabra16G0248500 Salix brachista HOM05D004044 ORTHO05D004841 8.0e-20 100.1 103 56.3
SHI53714 Sapria himalayana HOM05D004044 ORTHO05D004841 8.0e-20 100.1 47 97.9
unitig_0.g646 Utricularia gibba HOM05D004044 ORTHO05D004841 8.0e-20 100.1 88 58.0
EL10Ac7g16082 Beta vulgaris HOM05D004044 ORTHO05D004841 1.1e-19 99.8 88 59.1
Nn1g09527 Nelumbo nucifera HOM05D004044 ORTHO05D004841 1.1e-19 99.8 88 59.1
Hund04913 Selenicereus undatus HOM05D004044 ORTHO05D004841 1.1e-19 99.8 88 60.2
SGA_v2.0_scaffold183G39883 Striga asiatica HOM05D004044 ORTHO05D004841 1.1e-19 99.8 88 58.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.1e-19 99.8 88 58.0
TAR369G0144 Trochodendron aralioides HOM05D004044 ORTHO05D004841 1.1e-19 99.8 88 59.1
TAR623G0707 Trochodendron aralioides HOM05D004044 ORTHO05D004841 1.1e-19 99.8 88 59.1
BraA10t43718Z Brassica rapa HOM05D004044 ORTHO05D004841 1.8e-19 99.0 85 61.2
DCAR_007422 Daucus carota HOM05D004044 ORTHO05D004841 1.8e-19 99.0 88 58.0
COL.COLO4_35818 Corchorus olitorius HOM05D004044 ORTHO05D004841 2.3e-19 98.6 84 63.1
BcaC04g19817 Brassica carinata HOM05D004044 ORTHO05D004841 3.1e-19 98.2 98 55.1
ECA248G0832 Erigeron canadensis HOM05D004044 ORTHO05D004841 3.1e-19 98.2 88 59.1
Zm00001eb287570 Zea mays HOM05D004044 ORTHO05D004841 3.1e-19 98.2 88 59.1
Os05g0400700 Oryza sativa ssp. japonica HOM05D004044 ORTHO05D004841 4.0e-19 97.8 88 58.0
PSO675G7761 Papaver somniferum HOM05D004044 ORTHO05D004841 4.0e-19 97.8 88 56.8
CDE02G2400 Ceratophyllum demersum HOM05D004044 ORTHO05D004841 5.2e-19 97.4 88 56.8
Gohir.A05G092600 Gossypium hirsutum HOM05D004044 ORTHO05D004841 5.2e-19 97.4 84 60.7
MBI05_g02651_MAGBIO Magnolia biondii HOM05D004044 ORTHO05D004841 5.2e-19 97.4 88 58.0
Hund18882 Selenicereus undatus HOM05D004044 ORTHO05D004841 6.8e-19 97.1 88 58.0
Nitab4.5_0009356g0020 Nicotiana tabacum HOM05D004044 ORTHO05D004841 8.9e-19 96.7 85 60.0
PSO675G0394 Papaver somniferum HOM05D004044 ORTHO05D004841 1.2e-18 96.3 88 55.7
Rhsim10G0155100 Rhododendron simsii HOM05D004044 ORTHO05D004841 1.5e-18 95.9 85 60.0
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 2.0e-18 95.5 84 60.7
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 2.6e-18 95.1 88 55.7
SEGI_41420 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 3.4e-18 94.7 88 56.8
BolC9t57997H Brassica oleracea HOM05D004044 ORTHO05D004841 4.4e-18 94.4 84 59.5
A03p60060 Brassica napus HOM05D004044 ORTHO05D004841 7.5e-18 93.6 88 56.8
AUR62028438 Chenopodium quinoa HOM05D004044 ORTHO05D004841 9.8e-18 93.2 92 56.5
BcaB01g04613 Brassica carinata HOM05D004044 ORTHO05D004841 1.7e-17 92.4 88 55.7
FvH4_2g24550 Fragaria vesca HOM05D004044 ORTHO05D004841 1.7e-17 92.4 89 57.3
A03p11890 Brassica napus HOM05D000115 ORTHO05D004841 2.2e-17 92.0 88 55.7
BraA03t10501Z Brassica rapa HOM05D004044 ORTHO05D004841 2.2e-17 92.0 88 55.7
FAN24G0219 Fragaria x ananassa HOM05D004044 ORTHO05D000111 2.2e-17 92.0 89 58.4
Mapoly0121s0023 Marchantia polymorpha HOM05D004044 ORTHO05D004841 2.2e-17 92.0 88 53.4
SMO367G0145 Selaginella moellendorffii HOM05D004044 ORTHO05D004841 2.2e-17 92.0 88 53.4
PSO541G5855 Papaver somniferum HOM05D004044 ORTHO05D004841 2.9e-17 91.7 85 55.3
PSO675G2284 Papaver somniferum HOM05D004044 ORTHO05D004841 2.9e-17 91.7 85 55.3
FAN15G0434 Fragaria x ananassa HOM05D004044 ORTHO05D004841 8.3e-17 90.1 89 56.2
SHI51733 Sapria himalayana HOM05D004044 ORTHO05D004841 8.3e-17 90.1 44 97.7
C03p13980 Brassica napus HOM05D004044 ORTHO05D004841 1.1e-16 89.7 88 54.5
BolC3t13845H Brassica oleracea HOM05D004044 ORTHO05D004841 1.4e-16 89.4 88 53.4
Pp3c6_9100 Physcomitrium patens HOM05D004044 ORTHO05D004841 1.4e-16 89.4 88 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2510 Anthoceros agrestis HOM05D004044 ORTHO05D004841 4.1e-16 87.8 88 48.9
RcHm_v2.0_Chr6g0292371 Rosa chinensis HOM05D004044 ORTHO05D004841 1.2e-15 86.3 89 55.1
BcaB01g04614 Brassica carinata HOM05D004044 ORTHO05D004841 2.0e-15 85.5 82 56.1
Duzib147G0502 Durio zibethinus HOM05D004044 ORTHO05D004841 2.0e-15 85.5 91 51.6
SEGI_11642 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 1.7e-14 82.4 85 51.8
Gorai.009G096000 Gossypium raimondii HOM05D004044 ORTHO05D004841 5.0e-14 80.9 47 80.9
Glyma.14G007900 Glycine max HOM05D004044 ORTHO05D004841 8.6e-14 80.1 47 78.7
Lj2g0015661 Lotus japonicus HOM05D004044 ORTHO05D004841 2.8e-12 75.1 68 57.4
SHI32325 Sapria himalayana HOM05D004044 ORTHO05D004841 4.7e-12 74.3 70 57.1
ATR0697G111 Amborella trichopoda HOM05D004044 ORTHO05D004841 8.1e-12 73.6 47 68.1
FAN27G1470 Fragaria x ananassa HOM05D004044 ORTHO05D000111 3.1e-11 71.6 76 55.3
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 4.0e-11 71.2 91 40.7
Oeu007669.1 Olea europaea HOM05D004044 ORTHO05D004841 3.4e-10 68.2 46 65.2
CSS0043288 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 7.5e-10 67.0 65 55.4
MCO11G406 Micromonas commoda HOM05D004044 ORTHO05D004841 7.5e-10 67.0 87 36.8
Cre16.g667750 Chlamydomonas reinhardtii HOM05D004044 ORTHO05D004841 9.9e-10 66.6 101 34.7
SHI52156 Sapria himalayana HOM05D004044 ORTHO05D004841 4.9e-09 64.3 55 63.6
Peaxi162Scf00481g00055 Petunia axillaris HOM05D004044 ORTHO05D004841 3.2e-08 61.6 72 50.0
MELO3C027194.2 Cucumis melo HOM05D004044 ORTHO05D004841 9.2e-08 60.1 59 57.6
Eucgr.J01999 Eucalyptus grandis HOM05D004044 ORTHO05D004841 9.2e-08 60.1 59 57.6
Migut.K00396 Erythranthe guttata HOM05D004044 ORTHO05D004841 1.3e-06 56.2 57 54.4


User provided reference genes

Program Settings