Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI51478 Sapria himalayana HOM05D004044 ORTHO05D004841 1.4e-72 276.2 134 100.0
Psat7g090040 Pisum sativum HOM05D004044 ORTHO05D004841 8.6e-43 177.2 136 66.9
Potri.001G377200 Populus trichocarpa HOM05D004044 ORTHO05D004841 1.1e-42 176.8 136 66.9
ClCG01G008130 Citrullus lanatus HOM05D004044 ORTHO05D004841 1.5e-42 176.4 136 67.6
CsaV3_5G020160 Cucumis sativus L. HOM05D004044 ORTHO05D004841 1.5e-42 176.4 136 67.6
arahy.Tifrunner.gnm1.ann1.3AM9HW Arachis hypogaea HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
arahy.Tifrunner.gnm1.ann1.4J3X95 Arachis hypogaea HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
Ca_04445_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
Ca_18265_v3 Cicer arietinum L. HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
Glyma.05G130300 Glycine max HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
Glyma.08G085100 Glycine max HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
Lalb_Chr03g0035651 Lupinus albus HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
Phvul.002G193600 Phaseolus vulgaris HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
TPR.G4935 Trifolium pratense HOM05D004044 ORTHO05D004841 1.9e-42 176.0 136 66.2
CiPaw.14G064200 Carya illinoinensis HOM05D004044 ORTHO05D004841 2.5e-42 175.6 136 66.9
Lalb_Chr19g0130021 Lupinus albus HOM05D004044 ORTHO05D004841 2.5e-42 175.6 136 65.4
Manes.02G127300 Manihot esculenta HOM05D004044 ORTHO05D004841 2.5e-42 175.6 136 66.9
VMungo0251G1187 Vigna mungo HOM05D004044 ORTHO05D004841 2.5e-42 175.6 136 66.2
Thecc.09G313400 Theobroma cacao HOM05D004044 ORTHO05D004841 3.3e-42 175.3 136 66.2
Medtr4g096810 Medicago truncatula HOM05D004044 ORTHO05D004841 4.2e-42 174.9 136 65.4
Sed0006109 Sechium edule HOM05D004044 ORTHO05D004841 4.2e-42 174.9 136 66.2
Duzib150G0800 Durio zibethinus HOM05D004044 ORTHO05D004841 5.6e-42 174.5 136 66.9
FAN02G2699 Fragaria x ananassa HOM05D004044 ORTHO05D004841 5.6e-42 174.5 136 66.9
FAN09G1115 Fragaria x ananassa HOM05D004044 ORTHO05D004841 5.6e-42 174.5 136 66.9
Gohir.A08G001500 Gossypium hirsutum HOM05D004044 ORTHO05D004841 7.2e-42 174.1 136 66.2
VMungo0647G0323 Vigna mungo HOM05D004044 ORTHO05D004841 7.2e-42 174.1 136 64.7
Atru.chr13.1634 Acer truncatum HOM05D004044 ORTHO05D004841 9.5e-42 173.7 136 66.2
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 9.5e-42 173.7 136 66.2
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 9.5e-42 173.7 136 66.2
Cfa017837 Carpinus fangiana HOM05D004044 ORTHO05D004841 9.5e-42 173.7 136 66.9
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 9.5e-42 173.7 136 66.2
Aa31LG1G11990 Aethionema arabicum HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 65.4
BcaB05g22479 Brassica carinata HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 65.4
BcaC03g14038 Brassica carinata HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 65.4
A02p07330 Brassica napus HOM05D000115 ORTHO05D004841 1.2e-41 173.3 136 65.4
C02p12800 Brassica napus HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 65.4
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 65.4
FvH4_6g26920 Fragaria vesca HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
FAN05G0006 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
FAN09G4540 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
FAN14G5530 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
MD06G1239600 Malus domestica HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
Prupe.4G244700 Prunus persica HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
PGR102G0470 Punica granatum HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 65.4
RcHm_v2.0_Chr2g0128671 Rosa chinensis HOM05D004044 ORTHO05D004841 1.2e-41 173.3 136 66.2
CAN.G141.22 Capsicum annuum HOM05D004044 ORTHO05D004841 1.6e-41 172.9 136 65.4
Nitab4.5_0000839g0100 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.6e-41 172.9 136 65.4
Nitab4.5_0005607g0010 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.6e-41 172.9 136 65.4
QL12p009539 Quercus lobata HOM05D004044 ORTHO05D004841 1.6e-41 172.9 136 65.4
Sed0005531 Sechium edule HOM05D004044 ORTHO05D004841 1.6e-41 172.9 136 64.7
Solyc06g005790.3 Solanum lycopersicum HOM05D004044 ORTHO05D004841 1.6e-41 172.9 136 65.4
Gorai.004G006200 Gossypium raimondii HOM05D004044 ORTHO05D004841 2.1e-41 172.6 136 65.4
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 2.1e-41 172.6 136 65.4
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 2.1e-41 172.6 136 65.4
Atru.chr3.4016 Acer truncatum HOM05D004044 ORTHO05D004841 2.8e-41 172.2 136 65.4
MD14G1245600 Malus domestica HOM05D004044 ORTHO05D004841 2.8e-41 172.2 136 66.2
CSS0028029 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 3.6e-41 171.8 136 65.4
Cc01_g13450 Coffea canephora HOM05D004044 ORTHO05D004841 3.6e-41 171.8 136 65.4
Hma1.2p1_0274F.1_g110460 Hydrangea macrophylla HOM05D004044 ORTHO05D004841 3.6e-41 171.8 136 65.4
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 3.6e-41 171.8 136 64.0
TWI75G1574 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 3.6e-41 171.8 136 65.4
Ciclev10029380m.g Citrus clementina HOM05D004044 ORTHO05D004841 4.7e-41 171.4 136 64.0
Gohir.D08G012200 Gossypium hirsutum HOM05D004044 ORTHO05D004841 6.1e-41 171.0 136 64.7
Lsat_1_v5_gn_5_161301 Lactuca sativa HOM05D004044 ORTHO05D004841 6.1e-41 171.0 136 64.7
Lj1A145T59 Lonicera japonica HOM05D004044 ORTHO05D004841 8.0e-41 170.6 136 64.7
AT5G59180 Arabidopsis thaliana HOM05D004044 ORTHO05D004841 1.0e-40 170.2 136 64.0
Dinv17058 Davidia involucrata HOM05D004044 ORTHO05D004841 1.0e-40 170.2 136 64.7
Prupe.5G243500 Prunus persica HOM05D004044 ORTHO05D004841 1.0e-40 170.2 136 65.4
TWI31G1060 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 1.0e-40 170.2 136 64.0
MSTRG.16970 Avicennia marina HOM05D004044 ORTHO05D004841 1.4e-40 169.9 136 64.0
GSVIVG01024869001 Vitis vinifera HOM05D004044 ORTHO05D004841 1.4e-40 169.9 136 64.0
A10p16340 Brassica napus HOM05D000115 ORTHO05D004841 3.0e-40 168.7 136 63.2
CANSAT25G0006 Cannabis sativa HOM05D004044 ORTHO05D004841 3.0e-40 168.7 136 64.0
CANSAT25G0085 Cannabis sativa HOM05D004044 ORTHO05D004841 3.0e-40 168.7 136 64.0
Ah.08g220220 Amaranthus hybridus HOM05D000115 ORTHO05D000464 4.0e-40 168.3 136 64.0
Migut.K00397 Erythranthe guttata HOM05D004044 ORTHO05D004841 4.0e-40 168.3 136 62.5
Cpa.g.sc81.63 Carica papaya HOM05D004044 ORTHO05D004841 5.2e-40 167.9 130 66.9
EL10Ac7g16082 Beta vulgaris HOM05D004044 ORTHO05D004841 8.9e-40 167.2 136 61.8
Nn1g09527 Nelumbo nucifera HOM05D004044 ORTHO05D004841 8.9e-40 167.2 136 63.2
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 8.9e-40 167.2 136 64.0
TAR369G0144 Trochodendron aralioides HOM05D004044 ORTHO05D004841 8.9e-40 167.2 136 63.2
TAR623G0707 Trochodendron aralioides HOM05D004044 ORTHO05D004841 8.9e-40 167.2 136 63.2
Actinidia23914 Actinidia chinensis HOM05D004044 ORTHO05D004841 1.2e-39 166.8 136 63.2
MSTRG.20492 Avicennia marina HOM05D004044 ORTHO05D004841 1.2e-39 166.8 136 63.2
Sopen06g001770 Solanum pennellii HOM05D004044 ORTHO05D004841 1.2e-39 166.8 131 65.6
PGSC0003DMG400020826 Solanum tuberosum HOM05D004044 ORTHO05D004841 1.2e-39 166.8 131 65.6
AUR62001726 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.5e-39 166.4 136 61.8
Hund04913 Selenicereus undatus HOM05D004044 ORTHO05D004841 1.5e-39 166.4 136 62.5
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.5e-39 166.4 134 62.7
Zm00001eb287570 Zea mays HOM05D004044 ORTHO05D004841 1.5e-39 166.4 136 63.2
Os05g0400700 Oryza sativa ssp. japonica HOM05D004044 ORTHO05D004841 2.6e-39 165.6 136 62.5
Rhsim01G0232900 Rhododendron simsii HOM05D004044 ORTHO05D004841 2.6e-39 165.6 136 63.2
Haze_00336 Corylus avellana HOM05D004044 ORTHO05D004841 3.4e-39 165.2 131 66.4
Thhalv10014822m.g Eutrema salsugineum HOM05D004044 ORTHO05D004841 3.4e-39 165.2 129 65.1
BcaB08g36284 Brassica carinata HOM05D004044 ORTHO05D004841 4.4e-39 164.9 138 61.6
CDE02G2400 Ceratophyllum demersum HOM05D004044 ORTHO05D004841 4.4e-39 164.9 136 61.8
MBI05_g02651_MAGBIO Magnolia biondii HOM05D004044 ORTHO05D004841 4.4e-39 164.9 136 62.5
ECA247G2777 Erigeron canadensis HOM05D004044 ORTHO05D004841 5.7e-39 164.5 131 64.9
PSO675G7761 Papaver somniferum HOM05D004044 ORTHO05D004841 7.5e-39 164.1 136 61.0
HanXRQChr09g0248471 Helianthus annuus HOM05D004044 ORTHO05D004841 9.8e-39 163.7 131 64.9
HanXRQChr09g0256561 Helianthus annuus HOM05D004044 ORTHO05D004841 9.8e-39 163.7 131 64.9
PSO675G0394 Papaver somniferum HOM05D004044 ORTHO05D004841 2.2e-38 162.5 136 60.3
vmacro14563 Vaccinium macrocarpon HOM05D004044 ORTHO05D004841 4.9e-38 161.4 149 59.1
AUR62020050 Chenopodium quinoa HOM05D004044 ORTHO05D004841 8.3e-38 160.6 131 62.6
DCAR_007422 Daucus carota HOM05D004044 ORTHO05D004841 8.3e-38 160.6 131 62.6
Sabra16G0248500 Salix brachista HOM05D004044 ORTHO05D004841 1.1e-37 160.2 146 60.3
SHI49599 Sapria himalayana HOM05D004044 ORTHO05D004841 1.1e-37 160.2 110 76.4
Hund18882 Selenicereus undatus HOM05D004044 ORTHO05D004841 1.1e-37 160.2 136 59.6
unitig_0.g646 Utricularia gibba HOM05D004044 ORTHO05D004841 1.1e-37 160.2 131 61.8
ECA248G0832 Erigeron canadensis HOM05D004044 ORTHO05D004841 1.8e-37 159.5 131 63.4
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 2.4e-37 159.1 149 59.1
Nitab4.5_0000102g0420 Nicotiana tabacum HOM05D004044 ORTHO05D004841 4.1e-37 158.3 124 65.3
FAN24G0219 Fragaria x ananassa HOM05D004044 ORTHO05D000111 3.5e-36 155.2 137 60.6
FvH4_2g24550 Fragaria vesca HOM05D004044 ORTHO05D004841 1.0e-35 153.7 136 59.6
Pp3c6_9100 Physcomitrium patens HOM05D004044 ORTHO05D004841 1.0e-35 153.7 133 57.1
Mapoly0121s0023 Marchantia polymorpha HOM05D004044 ORTHO05D004841 1.7e-35 152.9 135 57.0
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 1.7e-35 152.9 136 55.9
Lj6g0006771 Lotus japonicus HOM05D004044 ORTHO05D004841 2.3e-35 152.5 120 65.0
SEGI_41420 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 5.0e-35 151.4 131 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2510 Anthoceros agrestis HOM05D004044 ORTHO05D004841 8.6e-35 150.6 136 54.4
FAN15G0434 Fragaria x ananassa HOM05D004044 ORTHO05D004841 1.5e-34 149.8 136 58.8
SMO367G0145 Selaginella moellendorffii HOM05D004044 ORTHO05D004841 7.3e-34 147.5 135 55.6
Rhsim10G0155100 Rhododendron simsii HOM05D004044 ORTHO05D004841 1.2e-33 146.7 164 51.2
Gohir.A05G092600 Gossypium hirsutum HOM05D004044 ORTHO05D004841 2.1e-33 146.0 141 56.7
BolC3t13845H Brassica oleracea HOM05D004044 ORTHO05D004841 3.6e-33 145.2 136 54.4
BraA03t10501Z Brassica rapa HOM05D004044 ORTHO05D004841 8.0e-33 144.1 136 54.4
A03p60060 Brassica napus HOM05D004044 ORTHO05D004841 1.0e-32 143.7 136 54.4
C03p13980 Brassica napus HOM05D004044 ORTHO05D004841 1.0e-32 143.7 133 55.6
RcHm_v2.0_Chr6g0292371 Rosa chinensis HOM05D004044 ORTHO05D004841 1.4e-32 143.3 137 58.4
Gorai.009G096000 Gossypium raimondii HOM05D004044 ORTHO05D004841 4.0e-32 141.7 112 66.1
A03p11890 Brassica napus HOM05D000115 ORTHO05D004841 8.9e-32 140.6 136 53.7
BolC2t07375H Brassica oleracea HOM05D000115 ORTHO05D004841 8.9e-32 140.6 138 58.0
ATR0697G111 Amborella trichopoda HOM05D004044 ORTHO05D004841 1.5e-31 139.8 114 60.5
BraA02t05814Z Brassica rapa HOM05D004044 ORTHO05D004841 2.0e-31 139.4 140 56.4
BraA10t43718Z Brassica rapa HOM05D004044 ORTHO05D004841 4.4e-31 138.3 137 54.7
BcaB01g04613 Brassica carinata HOM05D004044 ORTHO05D004841 9.8e-31 137.1 131 53.4
SHI53714 Sapria himalayana HOM05D004044 ORTHO05D004841 1.7e-30 136.3 74 87.8
Lj2g0015661 Lotus japonicus HOM05D004044 ORTHO05D004841 2.9e-30 135.6 111 63.1
BcaC04g19817 Brassica carinata HOM05D004044 ORTHO05D004841 6.4e-30 134.4 136 54.4
Duzib147G0502 Durio zibethinus HOM05D004044 ORTHO05D004841 2.4e-29 132.5 137 53.3
BcaB01g04614 Brassica carinata HOM05D004044 ORTHO05D004841 5.4e-29 131.3 137 53.3
SHI53421 Sapria himalayana HOM05D004044 ORTHO05D004841 4.6e-28 128.3 72 86.1
FAN27G1470 Fragaria x ananassa HOM05D004044 ORTHO05D000111 6.0e-28 127.9 120 59.2
BolC9t57997H Brassica oleracea HOM05D004044 ORTHO05D004841 1.0e-27 127.1 139 52.5
Dinv43002 Davidia involucrata HOM05D004044 ORTHO05D004841 1.0e-27 127.1 107 62.6
Dinv43095 Davidia involucrata HOM05D004044 ORTHO05D004841 1.0e-27 127.1 107 62.6
PSO541G5855 Papaver somniferum HOM05D004044 ORTHO05D004841 1.3e-27 126.7 136 51.5
PSO675G2284 Papaver somniferum HOM05D004044 ORTHO05D004841 1.3e-27 126.7 136 51.5
SGA_v2.0_scaffold183G39883 Striga asiatica HOM05D004044 ORTHO05D004841 8.6e-27 124.0 107 59.8
Peaxi162Scf00481g00055 Petunia axillaris HOM05D004044 ORTHO05D004841 1.5e-26 123.2 115 58.3
COL.COLO4_35818 Corchorus olitorius HOM05D004044 ORTHO05D004841 2.5e-26 122.5 136 52.9
MELO3C027194.2 Cucumis melo HOM05D004044 ORTHO05D004841 7.3e-26 120.9 102 63.7
Eucgr.J01999 Eucalyptus grandis HOM05D004044 ORTHO05D004841 9.5e-26 120.6 102 63.7
CSS0043288 Camellia sinensis var. sinensis HOM05D004044 ORTHO05D004841 6.2e-25 117.9 112 58.9
SHI51733 Sapria himalayana HOM05D004044 ORTHO05D004841 8.1e-25 117.5 90 71.1
MCO11G406 Micromonas commoda HOM05D004044 ORTHO05D004841 1.1e-21 107.1 137 38.7
SHI32325 Sapria himalayana HOM05D004044 ORTHO05D004841 9.2e-21 104.0 91 61.5
Cre16.g667750 Chlamydomonas reinhardtii HOM05D004044 ORTHO05D004841 2.1e-20 102.8 129 37.2
Glyma.14G007900 Glycine max HOM05D004044 ORTHO05D004841 1.3e-19 100.1 86 61.6
Nitab4.5_0009356g0020 Nicotiana tabacum HOM05D004044 ORTHO05D004841 1.6e-17 93.2 85 58.8
AUR62028438 Chenopodium quinoa HOM05D004044 ORTHO05D004841 2.8e-17 92.4 93 54.8
PRCOL_00005897 Prasinoderma coloniale HOM05D004044 ORTHO05D004841 6.2e-17 91.3 132 36.4
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 1.4e-16 90.1 130 36.2
Migut.K00396 Erythranthe guttata HOM05D004044 ORTHO05D004841 1.8e-16 89.7 80 60.0
Oeu007669.1 Olea europaea HOM05D004044 ORTHO05D004841 2.0e-15 86.3 93 50.5
SHI52156 Sapria himalayana HOM05D004044 ORTHO05D004841 1.7e-14 83.2 105 51.4
SEGI_11642 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 3.2e-13 79.0 85 50.6
Gohir.D05G093400 Gossypium hirsutum HOM05D004044 ORTHO05D004841 4.1e-13 78.6 51 72.5
COL.COLO4_18592 Corchorus olitorius HOM05D004044 ORTHO05D004841 3.5e-12 75.5 47 74.5
SEGI_08143 Sequoiadendron giganteum HOM05D004044 ORTHO05D004841 2.3e-11 72.8 47 70.2
C09p51390 Brassica napus HOM05D004044 ORTHO05D004841 5.6e-10 68.2 87 44.8


User provided reference genes

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