Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 4.5e-147 524.6 273 100.0
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 4.5e-147 524.6 273 100.0
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 6.8e-79 298.1 247 59.9
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 7.0e-76 288.1 247 56.3
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 2.7e-75 286.2 249 55.8
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 1.0e-74 284.3 249 55.8
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 1.9e-73 280.0 247 55.1
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 4.3e-73 278.9 253 55.3
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 5.6e-73 278.5 247 55.9
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 5.6e-73 278.5 244 54.9
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 2.1e-72 276.6 249 54.2
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 1.0e-71 274.2 238 54.6
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 5.2e-71 271.9 249 52.6
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 1.2e-70 270.8 244 53.7
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 2.6e-70 269.6 247 54.3
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 5.8e-70 268.5 247 53.8
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 9.8e-70 267.7 245 53.1
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 1.3e-69 267.3 233 55.4
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.7e-69 266.9 252 52.4
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.7e-69 266.9 252 52.4
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 6.4e-69 265.0 243 53.5
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 6.4e-69 265.0 254 50.8
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 8.3e-69 264.6 246 52.4
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 1.1e-68 264.2 248 52.4
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 2.4e-68 263.1 252 50.8
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 5.4e-68 261.9 233 54.5
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 5.4e-68 261.9 249 51.8
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 5.4e-68 261.9 249 51.8
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 9.2e-68 261.2 248 52.8
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 1.2e-67 260.8 244 52.5
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 3.5e-67 259.2 249 51.4
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 4.6e-67 258.8 247 52.2
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 4.6e-67 258.8 252 51.6
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 4.6e-67 258.8 247 51.4
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 6.0e-67 258.5 224 53.1
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 7.8e-67 258.1 250 52.8
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 1.0e-66 257.7 248 51.6
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 1.7e-66 256.9 248 51.6
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 1.7e-66 256.9 248 51.6
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 1.7e-66 256.9 248 51.6
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 2.3e-66 256.5 247 51.0
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 2.3e-66 256.5 244 53.7
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 3.0e-66 256.1 243 53.9
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 6.6e-66 255.0 241 49.8
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 8.6e-66 254.6 245 51.8
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 8.6e-66 254.6 265 48.3
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 1.5e-65 253.8 243 51.4
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 3.3e-65 252.7 244 50.8
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 4.3e-65 252.3 251 47.4
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 7.3e-65 251.5 228 54.8
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 2.1e-64 250.0 255 50.2
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 2.1e-64 250.0 250 50.8
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 3.6e-64 249.2 248 50.8
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 3.6e-64 249.2 241 51.5
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 3.6e-64 249.2 245 51.0
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 4.7e-64 248.8 249 48.2
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 4.7e-64 248.8 247 50.2
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 6.2e-64 248.4 249 48.6
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 8.0e-64 248.1 243 47.7
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 3.1e-63 246.1 253 48.6
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 4.0e-63 245.7 243 48.6
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 4.0e-63 245.7 253 47.8
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 1.2e-62 244.2 236 50.4
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 2.0e-62 243.4 241 51.0
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 3.4e-62 242.7 248 50.4
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 5.8e-62 241.9 237 52.3
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 4.9e-61 238.8 250 48.0
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 6.4e-61 238.4 248 48.4
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 6.4e-61 238.4 248 48.8
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 8.3e-61 238.0 235 48.9
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 1.4e-60 237.3 246 49.6
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 2.4e-60 236.5 246 48.4
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 4.1e-60 235.7 246 48.0
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 5.4e-60 235.3 253 47.4
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 1.2e-59 234.2 253 47.4
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 2.1e-59 233.4 239 49.8
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 3.5e-59 232.6 251 47.0
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 4.6e-59 232.3 250 47.2
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 7.8e-59 231.5 251 44.6
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 7.8e-59 231.5 322 39.8
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 1.0e-58 231.1 202 55.4
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.3e-58 230.7 263 46.0
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 1.7e-58 230.3 245 44.9
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 6.6e-58 228.4 235 48.5
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 1.5e-57 227.3 229 48.9
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 2.5e-57 226.5 212 49.5
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 7.3e-57 224.9 246 45.5
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 1.1e-55 221.1 203 53.2
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 2.6e-54 216.5 206 51.9
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 3.4e-54 216.1 209 51.2
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 1.7e-53 213.8 291 40.9
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 6.4e-53 211.8 245 43.3
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 1.1e-52 211.1 183 55.7
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 3.6e-48 196.1 238 45.0
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 5.2e-47 192.2 202 47.0
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 3.5e-43 179.5 241 41.9
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.6e-40 170.6 267 36.7
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 2.8e-40 169.9 191 46.1
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 6.2e-40 168.7 123 60.2
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 2.4e-39 166.8 179 48.0
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 3.8e-37 159.5 172 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 1.9e-36 157.1 277 32.9
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 6.0e-35 152.1 247 33.6
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.3e-34 150.2 214 37.9
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 2.4e-31 140.2 183 39.9
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 1.5e-30 137.5 145 46.2
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.3e-29 134.4 127 48.0
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 2.7e-27 126.7 220 30.9
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 3.9e-26 122.9 127 51.2
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 3.1e-23 113.2 131 44.3
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 2.2e-21 107.1 119 46.2
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 4.2e-20 102.8 133 42.1
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 2.7e-19 100.1 97 49.5
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 2.0e-14 84.0 223 26.9
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 5.8e-14 82.4 119 33.6
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.9e-12 77.4 89 38.2
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.5e-12 77.0 184 29.3
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 4.8e-08 62.8 84 39.3
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 8.2e-08 62.0 57 42.1


User provided reference genes

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