Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI29392 Sapria himalayana HOM05D005508 ORTHO05D006882 2.4e-46 188.3 87 100.0
SHI01216 Sapria himalayana HOM05D005508 ORTHO05D006882 7.3e-27 123.6 70 84.3
Cfa007661 Carpinus fangiana HOM05D005508 ORTHO05D006882 1.4e-17 92.8 76 65.8
Haze_14435 Corylus avellana HOM05D005508 ORTHO05D006882 1.2e-16 89.7 77 62.3
Cfa007659 Carpinus fangiana HOM05D005508 ORTHO05D006882 2.0e-16 89.0 77 62.3
Sed0021649 Sechium edule HOM05D005508 ORTHO05D006882 9.9e-16 86.7 77 58.4
GSVIVG01032921001 Vitis vinifera HOM05D005508 ORTHO05D006882 2.9e-15 85.1 77 58.4
CSS0005994 Camellia sinensis var. sinensis HOM05D005508 ORTHO05D006882 3.8e-15 84.7 70 62.9
CANSAT64G1484 Cannabis sativa HOM05D005508 ORTHO05D006882 6.4e-15 84.0 77 59.7
QL10p049508 Quercus lobata HOM05D005508 ORTHO05D006882 6.4e-15 84.0 69 60.9
Eucgr.I02026 Eucalyptus grandis HOM05D005508 ORTHO05D006882 8.4e-15 83.6 70 62.9
Rhsim10G0042800 Rhododendron simsii HOM05D005508 ORTHO05D006882 8.4e-15 83.6 77 58.4
Sabra17G0082300 Salix brachista HOM05D005508 ORTHO05D006882 8.4e-15 83.6 69 66.7
THA.LOC104820997 Tarenaya hassleriana HOM05D005508 ORTHO05D006882 8.4e-15 83.6 70 61.4
Lj4A336G6 Lonicera japonica HOM05D005508 ORTHO05D006882 1.9e-14 82.4 70 62.9
Lj4C332G1 Lonicera japonica HOM05D005508 ORTHO05D006882 1.9e-14 82.4 70 62.9
Prupe.3G255400 Prunus persica HOM05D005508 ORTHO05D006882 1.9e-14 82.4 68 61.8
Solyc02g088780.4 Solanum lycopersicum HOM05D005508 ORTHO05D006882 1.9e-14 82.4 70 61.4
Sopen02g033500 Solanum pennellii HOM05D005508 ORTHO05D006882 1.9e-14 82.4 70 61.4
Ciclev10011739m.g Citrus clementina HOM05D005508 ORTHO05D006882 2.4e-14 82.0 77 59.7
PSO017G4331 Papaver somniferum HOM05D005508 ORTHO05D006882 2.4e-14 82.0 77 59.7
PSO478G0705 Papaver somniferum HOM05D005508 ORTHO05D006882 2.4e-14 82.0 77 59.7
vmacro05630 Vaccinium macrocarpon HOM05D005508 ORTHO05D006882 2.4e-14 82.0 76 57.9
AUR62014947 Chenopodium quinoa HOM05D005508 ORTHO05D006882 3.2e-14 81.6 70 62.9
AUR62029195 Chenopodium quinoa HOM05D005508 ORTHO05D006882 3.2e-14 81.6 70 62.9
Cc07_g04170 Coffea canephora HOM05D005508 ORTHO05D006882 3.2e-14 81.6 70 62.9
Dinv33825 Davidia involucrata HOM05D005508 ORTHO05D006882 3.2e-14 81.6 69 60.9
Potri.017G093300 Populus trichocarpa HOM05D005508 ORTHO05D006882 3.2e-14 81.6 69 65.2
PGSC0003DMG400001452 Solanum tuberosum HOM05D005508 ORTHO05D006882 3.2e-14 81.6 70 61.4
CiPaw.04G056000 Carya illinoinensis HOM05D005508 ORTHO05D006882 4.2e-14 81.3 70 60.0
Manes.02G054600 Manihot esculenta HOM05D005508 ORTHO05D006882 4.2e-14 81.3 69 60.9
Nitab4.5_0003841g0090 Nicotiana tabacum HOM05D005508 ORTHO05D006882 4.2e-14 81.3 70 60.0
SGA_v2.0_scaffold148G36399 Striga asiatica HOM05D005508 ORTHO05D006882 4.2e-14 81.3 74 58.1
Atru.chr8.461 Acer truncatum HOM05D005508 ORTHO05D006882 5.4e-14 80.9 75 60.0
Duzib187G1075 Durio zibethinus HOM05D005508 ORTHO05D006882 5.4e-14 80.9 70 61.4
Lsat_1_v5_gn_4_172421 Lactuca sativa HOM05D005508 ORTHO05D006882 5.4e-14 80.9 70 60.0
Lsat_1_v5_gn_5_138080 Lactuca sativa HOM05D005508 ORTHO05D006882 5.4e-14 80.9 70 60.0
TAR371G0059 Trochodendron aralioides HOM05D005508 ORTHO05D006882 5.4e-14 80.9 77 58.4
CAN.G588.15 Capsicum annuum HOM05D005508 ORTHO05D006882 7.1e-14 80.5 70 60.0
Dinv34945 Davidia involucrata HOM05D005508 ORTHO05D006882 7.1e-14 80.5 66 63.6
Sopen01g053090 Solanum pennellii HOM05D005508 ORTHO05D006882 7.1e-14 80.5 70 60.0
PGSC0003DMG400001639 Solanum tuberosum HOM05D005508 ORTHO05D006882 7.1e-14 80.5 70 60.0
Aa31LG3G15780 Aethionema arabicum HOM05D005508 ORTHO05D006882 9.2e-14 80.1 68 58.8
AL6G26410 Arabidopsis lyrata HOM05D005508 ORTHO05D006882 1.2e-13 79.7 68 60.3
AT5G15550 Arabidopsis thaliana HOM05D005508 ORTHO05D006882 1.2e-13 79.7 68 60.3
Carub.0006s1373 Capsella rubella HOM05D005508 ORTHO05D006882 1.2e-13 79.7 68 60.3
Peaxi162Scf00166g00526 Petunia axillaris HOM05D005508 ORTHO05D006882 1.2e-13 79.7 70 60.0
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 1.2e-13 79.7 66 63.6
Hund05300 Selenicereus undatus HOM05D005508 ORTHO05D006882 1.2e-13 79.7 68 60.3
MSTRG.3354 Avicennia marina HOM05D005508 ORTHO05D006882 1.6e-13 79.3 66 63.6
Cpa.g.sc14.169 Carica papaya HOM05D005508 ORTHO05D006882 1.6e-13 79.3 70 58.6
Nn4g23404 Nelumbo nucifera HOM05D005508 ORTHO05D006882 2.1e-13 79.0 70 58.6
Sabra04G0069200 Salix brachista HOM05D005508 ORTHO05D006882 2.1e-13 79.0 69 60.9
Ah.10g032240 Amaranthus hybridus HOM05D005508 ORTHO05D006882 2.7e-13 78.6 70 58.6
ECA232G0694 Erigeron canadensis HOM05D005508 ORTHO05D006882 2.7e-13 78.6 69 58.0
MBI16_g10277_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D030056 2.7e-13 78.6 69 60.9
Solyc01g111030.2 Solanum lycopersicum HOM05D005508 ORTHO05D006882 2.7e-13 78.6 70 58.6
MELO3C008857.2 Cucumis melo HOM05D005508 ORTHO05D006882 3.5e-13 78.2 69 58.0
CsaV3_4G011930 Cucumis sativus L. HOM05D005508 ORTHO05D006882 3.5e-13 78.2 69 58.0
MD09G1066100 Malus domestica HOM05D005508 ORTHO05D006882 3.5e-13 78.2 70 57.1
Nitab4.5_0017643g0010 Nicotiana tabacum HOM05D005508 ORTHO05D006882 3.5e-13 78.2 66 60.6
SalBow1G3414 Salvia bowleyana HOM05D005508 ORTHO05D006882 4.6e-13 77.8 66 62.1
CDE02G3404 Ceratophyllum demersum HOM05D005508 ORTHO05D006882 6.0e-13 77.4 67 59.7
Gohir.A09G009900 Gossypium hirsutum HOM05D005508 ORTHO05D006882 6.0e-13 77.4 70 58.6
Gohir.D09G009000 Gossypium hirsutum HOM05D005508 ORTHO05D006882 6.0e-13 77.4 70 58.6
Gorai.006G010700 Gossypium raimondii HOM05D005508 ORTHO05D006882 6.0e-13 77.4 70 58.6
Oeu007065.1 Olea europaea HOM05D005508 ORTHO05D006882 7.8e-13 77.0 70 61.4
EL10Ac2g03136 Beta vulgaris HOM05D005508 ORTHO05D006882 1.0e-12 76.6 70 57.1
CARHR197750 Cardamine hirsuta HOM05D005508 ORTHO05D006882 1.3e-12 76.3 69 56.5
Ca_04302_v3 Cicer arietinum L. HOM05D005508 ORTHO05D006882 1.3e-12 76.3 74 58.1
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 1.7e-12 75.9 66 60.6
arahy.Tifrunner.gnm1.ann1.6ZV37H Arachis hypogaea HOM05D005508 ORTHO05D006882 2.3e-12 75.5 68 57.4
arahy.Tifrunner.gnm1.ann1.LP06NS Arachis hypogaea HOM05D005508 ORTHO05D006882 2.3e-12 75.5 68 57.4
Lj2g0000039 Lotus japonicus HOM05D005508 ORTHO05D006882 2.3e-12 75.5 68 60.3
Psat1g067800 Pisum sativum HOM05D005508 ORTHO05D006882 2.3e-12 75.5 66 59.1
TWI32G0965 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 3.0e-12 75.1 70 54.3
Lalb_Chr02g0158951 Lupinus albus HOM05D005508 ORTHO05D006882 3.9e-12 74.7 70 57.1
Phvul.004G035400 Phaseolus vulgaris HOM05D005508 ORTHO05D006882 3.9e-12 74.7 70 55.7
Thecc.04G094900 Theobroma cacao HOM05D005508 ORTHO05D006882 3.9e-12 74.7 66 59.1
TPR.G10015 Trifolium pratense HOM05D005508 ORTHO05D006882 3.9e-12 74.7 70 55.7
TPR.G17852 Trifolium pratense HOM05D005508 ORTHO05D006882 3.9e-12 74.7 70 55.7
Glyma.01G086000 Glycine max HOM05D005508 ORTHO05D006882 6.6e-12 73.9 70 55.7
Glyma.13G056900 Glycine max HOM05D005508 ORTHO05D006882 6.6e-12 73.9 70 55.7
Glyma.19G029400 Glycine max HOM05D005508 ORTHO05D006882 6.6e-12 73.9 70 55.7
MD17G1058800 Malus domestica HOM05D005508 ORTHO05D006882 6.6e-12 73.9 70 52.9
unitig_747.g21846 Utricularia gibba HOM05D005508 ORTHO05D006882 6.6e-12 73.9 70 55.7
VMungo0464G0521 Vigna mungo HOM05D005508 ORTHO05D006882 6.6e-12 73.9 70 54.3
Migut.K01277 Erythranthe guttata HOM05D005508 ORTHO05D006882 8.7e-12 73.6 66 56.1
PGR083G1795 Punica granatum HOM05D005508 ORTHO05D006882 8.7e-12 73.6 64 60.9
RcHm_v2.0_Chr2g0165901 Rosa chinensis HOM05D005508 ORTHO05D006882 8.7e-12 73.6 75 54.7
TAR622G1292 Trochodendron aralioides HOM05D005508 ORTHO05D006882 8.7e-12 73.6 70 57.1
Aqoxy3G02922 Aquilegia oxysepala HOM05D005508 ORTHO05D006882 1.1e-11 73.2 70 57.1
ClCG10G002410 Citrullus lanatus HOM05D005508 ORTHO05D006882 1.1e-11 73.2 67 53.7
HanXRQChr17g0551711 Helianthus annuus HOM05D005508 ORTHO05D006882 1.5e-11 72.8 70 54.3
Os07g0600400 Oryza sativa ssp. japonica HOM05D005508 ORTHO05D006882 1.5e-11 72.8 70 54.3
DCAR_011042 Daucus carota HOM05D005508 ORTHO05D006882 1.9e-11 72.4 84 50.0
TWI34G1701 Tripterygium wilfordii HOM05D005508 ORTHO05D006882 1.9e-11 72.4 70 54.3
BcaB01g05044 Brassica carinata HOM05D005508 ORTHO05D006882 3.3e-11 71.6 64 60.9
SalBow1G5707 Salvia bowleyana HOM05D005508 ORTHO05D006882 3.3e-11 71.6 63 60.3
Sp6g28530 Schrenkiella parvula HOM05D005508 ORTHO05D006882 3.3e-11 71.6 64 60.9
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 4.3e-11 71.2 77 50.6
COL.COLO4_07024 Corchorus olitorius HOM05D005508 ORTHO05D006882 5.6e-11 70.9 70 54.3
FAN02G1587 Fragaria x ananassa HOM05D005508 ORTHO05D010430 7.3e-11 70.5 75 52.0
FAN05G2519 Fragaria x ananassa HOM05D005508 ORTHO05D010430 7.3e-11 70.5 75 52.0
FvH4_6g46921 Fragaria vesca HOM05D005508 ORTHO05D006882 9.6e-11 70.1 68 52.9
FAN14G5804 Fragaria x ananassa HOM05D005508 ORTHO05D010430 9.6e-11 70.1 68 52.9
Glyma.05G027800 Glycine max HOM05D005508 ORTHO05D006882 9.6e-11 70.1 62 58.1
Thhalv10013619m.g Eutrema salsugineum HOM05D005508 ORTHO05D006882 1.3e-10 69.7 63 60.3
BcaC03g18558 Brassica carinata HOM05D005508 ORTHO05D006882 2.8e-10 68.6 64 59.4
Medtr7g099170 Medicago truncatula HOM05D005508 ORTHO05D006882 3.6e-10 68.2 68 57.4
SEGI_38227 Sequoiadendron giganteum HOM05D005508 ORTHO05D006882 2.0e-08 62.4 72 50.0
CBR_g18642 Chara braunii HOM05D005508 ORTHO05D006882 2.6e-08 62.0 63 55.6
Pp3c23_13260 Physcomitrium patens HOM05D005508 ORTHO05D006882 7.6e-08 60.5 64 53.1
HPP92_025853 Vanilla planifolia HOM05D005508 ORTHO05D006882 9.9e-08 60.1 66 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2684 Anthoceros agrestis HOM05D005508 ORTHO05D006882 1.3e-07 59.7 62 50.0
Mapoly0212s0005 Marchantia polymorpha HOM05D005508 ORTHO05D006882 6.4e-07 57.4 63 52.4
ATR0626G324 Amborella trichopoda HOM05D005508 ORTHO05D006882 1.4e-06 56.2 60 50.0
Cre17.g710100 Chlamydomonas reinhardtii HOM05D005508 ORTHO05D006882 1.9e-06 55.8 61 50.8
MCO06G049 Micromonas commoda HOM05D005508 ORTHO05D006882 7.1e-06 53.9 61 47.5


User provided reference genes

Program Settings