Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI27489 Sapria himalayana HOM05D000104 ORTHO05D004881 8.9e-240 833.2 416 100.0
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 1.2e-31 141.7 217 44.2
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 4.7e-31 139.8 217 42.9
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 8.9e-30 135.6 219 40.6
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 5.7e-29 132.9 217 41.0
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 5.7e-29 132.9 228 42.5
Duzib168G0196 Durio zibethinus HOM05D000104 ORTHO05D004881 1.3e-28 131.7 206 42.7
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.7e-28 131.3 206 42.7
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 2.2e-28 131.0 206 42.7
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 6.4e-28 129.4 225 41.3
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 1.4e-27 128.3 204 44.1
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 9.2e-27 125.6 228 40.4
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 4.6e-26 123.2 225 41.8
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.0e-25 122.1 224 42.4
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 1.7e-25 121.3 226 39.8
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.3e-25 120.9 215 41.9
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 3.0e-25 120.6 245 37.6
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 5.0e-25 119.8 248 36.3
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 8.6e-25 119.0 224 40.6
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.1e-24 118.6 224 41.1
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 1.1e-24 118.6 224 41.1
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 1.9e-24 117.9 225 37.8
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 7.3e-24 115.9 244 34.8
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 7.3e-24 115.9 239 35.1
FAN24G2688 Fragaria x ananassa HOM05D000104 ORTHO05D004881 2.1e-23 114.4 245 37.1
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 2.1e-23 114.4 235 37.0
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 2.8e-23 114.0 235 37.0
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 4.7e-23 113.2 235 38.3
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 8.0e-23 112.5 224 37.9
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 2.3e-22 110.9 219 39.7
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 3.4e-21 107.1 234 35.5
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 3.4e-21 107.1 237 36.7
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.3e-20 105.1 224 37.9
FAN10G4356 Fragaria x ananassa HOM05D012050 ORTHO05D004881 1.7e-20 104.8 234 35.0
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 2.2e-20 104.4 241 36.9
Psat5g195120 Pisum sativum HOM05D000104 ORTHO05D004881 6.4e-20 102.8 192 37.0
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 8.3e-20 102.4 246 33.7
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 2.4e-19 100.9 228 32.9
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 3.2e-19 100.5 224 35.3
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 3.2e-19 100.5 243 35.4
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.1e-19 100.1 242 35.1
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 9.2e-19 99.0 201 34.8
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 1.6e-18 98.2 237 34.2
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 1.6e-18 98.2 216 31.0
TAR633G1573 Trochodendron aralioides HOM05D000104 ORTHO05D004881 1.6e-18 98.2 229 37.6
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 2.7e-18 97.4 200 35.5
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 2.7e-18 97.4 218 35.3
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 3.5e-18 97.1 238 33.6
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.6e-18 96.7 233 34.8
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 4.6e-18 96.7 201 34.3
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 4.6e-18 96.7 242 33.5
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 6.0e-18 96.3 228 32.5
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 1.3e-17 95.1 249 34.5
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 1.7e-17 94.7 233 33.5
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 2.3e-17 94.4 194 38.1
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 3.0e-17 94.0 242 34.3
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 3.9e-17 93.6 219 32.4
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 5.0e-17 93.2 197 33.0
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 6.6e-17 92.8 281 30.6
Eucgr.J00717 Eucalyptus grandis HOM05D000104 ORTHO05D004881 6.6e-17 92.8 240 34.6
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 8.6e-17 92.4 263 33.5
Psat2g019640 Pisum sativum HOM05D000104 ORTHO05D004881 1.1e-16 92.0 216 32.4
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 1.5e-16 91.7 187 33.7
Hma1.2p1_1427F.1_g282920 Hydrangea macrophylla HOM05D000104 ORTHO05D004881 1.9e-16 91.3 243 34.2
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 2.5e-16 90.9 232 31.9
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 3.3e-16 90.5 245 31.4
Actinidia06943 Actinidia chinensis HOM05D000104 ORTHO05D004881 7.3e-16 89.4 246 32.5
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 7.3e-16 89.4 280 30.7
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 7.3e-16 89.4 227 31.3
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 1.8e-14 84.7 277 30.7
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 5.2e-14 83.2 197 33.0
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 6.8e-14 82.8 237 30.0
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 8.9e-14 82.4 236 32.6
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 8.9e-14 82.4 198 31.8
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 2.6e-13 80.9 234 33.3
Lalb_Chr10g0106391 Lupinus albus HOM05D000104 ORTHO05D004881 3.4e-13 80.5 225 29.3
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 1.3e-12 78.6 315 29.8
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 6.4e-12 76.3 252 31.3
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 8.3e-12 75.9 233 31.3
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 8.3e-12 75.9 210 31.4
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 1.1e-11 75.5 210 31.4
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 1.9e-11 74.7 184 32.6
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 9.2e-11 72.4 183 28.4
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 9.2e-11 72.4 208 29.8
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 1.6e-10 71.6 250 28.4
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 1.6e-10 71.6 250 28.4
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 3.5e-10 70.5 200 31.5
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 4.6e-10 70.1 204 33.8
ATR0721G045 Amborella trichopoda HOM05D000104 ORTHO05D004881 6.0e-10 69.7 146 34.9
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 1.7e-09 68.2 326 26.4
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 3.0e-09 67.4 255 29.4
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 5.1e-09 66.6 255 29.0
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 5.1e-09 66.6 213 30.0
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 8.6e-09 65.9 157 33.1
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 2.5e-08 64.3 252 28.6
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 2.5e-08 64.3 235 27.7
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 3.3e-08 63.9 234 29.5
SalBow6G0238 Salvia bowleyana HOM05D000104 ORTHO05D004881 3.3e-08 63.9 159 34.0
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 5.6e-08 63.2 201 28.9
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 1.2e-07 62.0 173 31.2
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 2.1e-07 61.2 143 33.6
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 3.6e-07 60.5 257 26.8
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 1.1e-06 58.9 130 36.2
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 1.4e-06 58.5 194 27.8
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 2.4e-06 57.8 122 33.6
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 6.8e-06 56.2 123 34.1


User provided reference genes

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