Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI23773 Sapria himalayana HOM05D003132 ORTHO05D003736 1.7e-88 329.3 168 100.0
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 3.0e-21 105.9 62 79.0
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 3.0e-21 105.9 62 79.0
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 3.0e-21 105.9 62 79.0
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 3.0e-21 105.9 62 79.0
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 3.0e-21 105.9 62 79.0
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 4.0e-21 105.5 62 79.0
Manes.18G072550 Manihot esculenta HOM05D003132 ORTHO05D003736 4.0e-21 105.5 63 76.2
Prupe.1G506400 Prunus persica HOM05D003132 ORTHO05D003736 4.0e-21 105.5 62 79.0
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 4.0e-21 105.5 62 79.0
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 5.2e-21 105.1 62 79.0
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 5.2e-21 105.1 62 77.4
Zm00001eb398120 Zea mays HOM05D003132 ORTHO05D003736 5.2e-21 105.1 63 77.8
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 6.8e-21 104.8 62 77.4
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 6.8e-21 104.8 62 77.4
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 6.8e-21 104.8 62 77.4
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 6.8e-21 104.8 62 77.4
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 6.8e-21 104.8 62 79.0
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 8.8e-21 104.4 62 80.6
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 8.8e-21 104.4 62 80.6
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 8.8e-21 104.4 75 70.7
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 1.2e-20 104.0 62 77.4
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 1.2e-20 104.0 62 77.4
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 1.2e-20 104.0 62 77.4
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 77.4
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 77.4
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 75.8
CDE06G1857 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 75.8
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 77.4
Cc00_g24650 Coffea canephora HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 77.4
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 79.0
Sp3g17790 Schrenkiella parvula HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 79.0
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 1.5e-20 103.6 62 79.0
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 2.0e-20 103.2 62 75.8
CiPaw.05G229400 Carya illinoinensis HOM05D003132 ORTHO05D003736 2.0e-20 103.2 62 77.4
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 2.0e-20 103.2 62 77.4
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 2.0e-20 103.2 62 79.0
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.0e-20 103.2 62 75.8
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 2.6e-20 102.8 62 77.4
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 2.6e-20 102.8 62 77.4
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 2.6e-20 102.8 62 77.4
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
ATR0495G010 Amborella trichopoda HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 75.8
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 74.2
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 74.2
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 3.4e-20 102.4 62 77.4
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 4.4e-20 102.1 62 77.4
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 4.4e-20 102.1 62 74.2
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 4.4e-20 102.1 61 75.4
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 4.4e-20 102.1 61 75.4
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 4.4e-20 102.1 62 74.2
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 5.7e-20 101.7 62 77.4
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 5.7e-20 101.7 62 77.4
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 5.7e-20 101.7 62 74.2
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 5.7e-20 101.7 76 67.1
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 7.5e-20 101.3 61 75.4
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 7.5e-20 101.3 62 75.8
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 7.5e-20 101.3 60 76.7
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 9.8e-20 100.9 62 74.2
Manes.02G158500 Manihot esculenta HOM05D003132 ORTHO05D003736 9.8e-20 100.9 62 74.2
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 1.3e-19 100.5 62 72.6
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 1.3e-19 100.5 62 74.2
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 1.7e-19 100.1 62 75.8
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.7e-19 100.1 62 72.6
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 1.7e-19 100.1 62 74.2
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 1.7e-19 100.1 62 74.2
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 2.2e-19 99.8 62 75.8
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 2.2e-19 99.8 62 75.8
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 2.2e-19 99.8 62 74.2
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 2.2e-19 99.8 69 68.1
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 2.2e-19 99.8 62 75.8
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 2.2e-19 99.8 61 72.1
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 2.2e-19 99.8 62 74.2
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 2.8e-19 99.4 62 74.2
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 2.8e-19 99.4 62 75.8
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 2.8e-19 99.4 61 72.1
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 2.8e-19 99.4 61 72.1
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 3.7e-19 99.0 62 74.2
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 3.7e-19 99.0 66 71.2
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 3.7e-19 99.0 62 75.8
BolC9t59562H Brassica oleracea HOM05D003132 ORTHO05D003736 3.7e-19 99.0 62 75.8
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 3.7e-19 99.0 62 72.6
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 4.9e-19 98.6 61 75.4
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 4.9e-19 98.6 62 74.2
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 6.3e-19 98.2 62 74.2
SEGI_27881 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 6.3e-19 98.2 60 75.0
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 8.3e-19 97.8 62 72.6
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 8.3e-19 97.8 62 72.6
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 8.3e-19 97.8 62 74.2
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 8.3e-19 97.8 62 72.6
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 1.1e-18 97.4 62 72.6
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 1.1e-18 97.4 62 72.6
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 1.1e-18 97.4 61 73.8
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 1.8e-18 96.7 62 72.6
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 3.1e-18 95.9 62 71.0
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 3.1e-18 95.9 79 63.3
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 4.1e-18 95.5 62 72.6
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 5.4e-18 95.1 62 71.0
CsaV3_2G011340 Cucumis sativus L. HOM05D003132 ORTHO05D003736 5.4e-18 95.1 62 71.0
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 9.2e-18 94.4 62 72.6
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 9.2e-18 94.4 62 72.6
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 1.2e-17 94.0 61 70.5
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 1.2e-17 94.0 62 69.4
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 2.0e-17 93.2 61 68.9
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 3.5e-17 92.4 61 68.9
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 1.0e-16 90.9 61 65.6
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 1.0e-16 90.9 52 78.8
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.0e-16 90.9 61 67.2
CSS0003734 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 1.3e-16 90.5 62 64.5
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.7e-16 90.1 111 45.9
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 1.7e-16 90.1 62 69.4
Thecc.08G166600 Theobroma cacao HOM05D003132 ORTHO05D003736 2.3e-16 89.7 60 68.3
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 5.0e-16 88.6 62 66.1
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 5.0e-16 88.6 111 45.0
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 5.0e-16 88.6 111 45.0
vmacro00917 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 5.0e-16 88.6 68 58.8
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 6.6e-16 88.2 61 63.9
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 1.1e-15 87.4 61 63.9
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 1.1e-15 87.4 74 56.8
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 1.9e-15 86.7 62 64.5
Dinv22067 Davidia involucrata HOM05D003132 ORTHO05D003736 2.5e-15 86.3 61 62.3
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 4.3e-15 85.5 61 63.9
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 5.6e-15 85.1 81 49.4
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 5.6e-15 85.1 62 62.9
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 5.6e-15 85.1 60 65.0
GSVIVG01037118001 Vitis vinifera HOM05D003132 ORTHO05D003736 5.6e-15 85.1 62 62.9
Lj9C693G4 Lonicera japonica HOM05D003132 ORTHO05D003736 7.3e-15 84.7 112 43.8
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 7.3e-15 84.7 69 59.4
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 7.3e-15 84.7 64 57.8
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 9.5e-15 84.3 62 62.9
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 1.2e-14 84.0 62 62.9
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 1.2e-14 84.0 62 61.3
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 1.6e-14 83.6 62 61.3
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 1.6e-14 83.6 62 61.3
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 1.6e-14 83.6 61 60.7
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 1.6e-14 83.6 111 43.2
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 2.8e-14 82.8 62 61.3
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 2.8e-14 82.8 69 58.0
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 2.8e-14 82.8 61 59.0
Psat5g230840 Pisum sativum HOM05D003132 ORTHO05D003736 2.8e-14 82.8 61 59.0
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 2.8e-14 82.8 60 60.0
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 4.7e-14 82.0 62 61.3
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 4.7e-14 82.0 62 62.9
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 6.1e-14 81.6 117 43.6
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 6.1e-14 81.6 62 61.3
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 1.0e-13 80.9 62 59.7
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.0e-13 80.9 62 61.3
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 1.4e-13 80.5 62 59.7
VMungo1080G0294 Vigna mungo HOM05D003132 ORTHO05D003736 1.4e-13 80.5 69 56.5
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 3.0e-13 79.3 61 62.3
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 5.2e-13 78.6 62 61.3
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 5.2e-13 78.6 56 64.3
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 6.8e-13 78.2 56 60.7
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 6.8e-13 78.2 56 60.7
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 1.2e-12 77.4 56 62.5
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 1.2e-12 77.4 55 61.8
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 1.5e-12 77.0 61 59.0
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 3.4e-12 75.9 62 62.9
Zm00001eb090720 Zea mays HOM05D003132 ORTHO05D003736 2.2e-11 73.2 61 57.4
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 3.7e-11 72.4 61 59.0
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 6.4e-11 71.6 107 40.2
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-09 67.0 60 56.7
Ca_14120_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 3.5e-09 65.9 47 59.6
Cfa026479 Carpinus fangiana HOM05D003132 ORTHO05D003736 1.7e-08 63.5 75 42.7
CARHR032860 Cardamine hirsuta HOM05D003132 ORTHO05D038701 3.9e-08 62.4 58 53.4


User provided reference genes

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