Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21257 Sapria himalayana HOM05D003044 ORTHO05D001869 1.6e-120 436.0 213 100.0
Manes.10G059500 Manihot esculenta HOM05D003044 ORTHO05D001869 2.1e-19 100.1 84 59.5
Sabra10G0191200 Salix brachista HOM05D003044 ORTHO05D001869 6.2e-19 98.6 82 61.0
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 3.1e-18 96.3 83 59.0
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 4.0e-18 95.9 82 61.0
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 4.0e-18 95.9 93 54.8
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 5.2e-18 95.5 96 52.1
VMungo0720G1731 Vigna mungo HOM05D003044 ORTHO05D001869 5.2e-18 95.5 80 60.0
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 1.2e-17 94.4 96 53.1
COL.COLO4_32784 Corchorus olitorius HOM05D003044 ORTHO05D001869 2.0e-17 93.6 98 56.1
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 2.6e-17 93.2 83 57.8
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 1.3e-16 90.9 76 64.5
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 1.3e-16 90.9 85 60.0
Ca_18140_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 1.7e-16 90.5 83 57.8
TWI63G0823 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 2.9e-16 89.7 88 56.8
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 4.9e-16 89.0 93 51.6
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 6.4e-16 88.6 84 58.3
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 6.4e-16 88.6 83 55.4
BolC1t05369H Brassica oleracea HOM05D003044 ORTHO05D001869 8.3e-16 88.2 89 55.1
Cpa.g.sc33.123 Carica papaya HOM05D003044 ORTHO05D001869 8.3e-16 88.2 84 56.0
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 8.3e-16 88.2 85 57.6
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 8.3e-16 88.2 85 57.6
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 8.3e-16 88.2 137 45.3
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 8.3e-16 88.2 83 56.6
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 8.3e-16 88.2 80 60.0
Thhalv10019905m.g Eutrema salsugineum HOM05D003044 ORTHO05D001869 1.1e-15 87.8 87 55.2
TPR.G19799 Trifolium pratense HOM05D003044 ORTHO05D001869 1.1e-15 87.8 83 55.4
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 1.4e-15 87.4 86 57.0
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 1.4e-15 87.4 84 54.8
Lj2C36T21 Lonicera japonica HOM05D003044 ORTHO05D001869 1.4e-15 87.4 94 52.1
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 1.4e-15 87.4 86 55.8
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 2.4e-15 86.7 85 57.6
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 3.2e-15 86.3 86 54.7
A01p41560 Brassica napus HOM05D003044 ORTHO05D001869 5.4e-15 85.5 91 52.7
Ca_10372_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 5.4e-15 85.5 75 58.7
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 5.4e-15 85.5 75 58.7
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 5.4e-15 85.5 85 57.6
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 5.4e-15 85.5 88 55.7
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 5.4e-15 85.5 90 52.2
TPR.G13387 Trifolium pratense HOM05D003044 ORTHO05D001869 5.4e-15 85.5 77 57.1
arahy.Tifrunner.gnm1.ann1.JKR5UJ Arachis hypogaea HOM05D003044 ORTHO05D001869 7.0e-15 85.1 88 52.3
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 7.0e-15 85.1 85 56.5
Ah.14g085720 Amaranthus hybridus HOM05D003044 ORTHO05D001869 9.2e-15 84.7 68 63.2
BraA01t04231Z Brassica rapa HOM05D003044 ORTHO05D001869 9.2e-15 84.7 89 53.9
C03p44310 Brassica napus HOM05D003044 ORTHO05D001869 1.6e-14 84.0 89 55.1
BolC3t16701H Brassica oleracea HOM05D003044 ORTHO05D001869 1.6e-14 84.0 89 55.1
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 1.6e-14 84.0 68 64.7
A03p36670 Brassica napus HOM05D003044 ORTHO05D001869 2.0e-14 83.6 90 53.3
Ah.09g231710 Amaranthus hybridus HOM05D003044 ORTHO05D001869 2.7e-14 83.2 69 62.3
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 2.7e-14 83.2 65 63.1
AT3G10650 Arabidopsis thaliana HOM05D003044 ORTHO05D001869 3.5e-14 82.8 86 55.8
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 3.5e-14 82.8 69 62.3
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 3.5e-14 82.8 75 60.0
BraA03t12831Z Brassica rapa HOM05D003044 ORTHO05D001869 4.6e-14 82.4 90 52.2
Eucgr.J00304 Eucalyptus grandis HOM05D003044 ORTHO05D001869 4.6e-14 82.4 94 50.0
Nn2g14384 Nelumbo nucifera HOM05D003044 ORTHO05D001869 6.0e-14 82.0 91 51.6
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 7.8e-14 81.6 90 54.4
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 7.8e-14 81.6 79 55.7
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 7.8e-14 81.6 90 51.1
Lalb_Chr02g0150891 Lupinus albus HOM05D003044 ORTHO05D001869 1.0e-13 81.3 81 51.9
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 1.0e-13 81.3 75 56.0
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 1.0e-13 81.3 83 56.6
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 1.3e-13 80.9 76 55.3
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.3e-13 80.9 85 54.1
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 1.3e-13 80.9 91 50.5
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 2.3e-13 80.1 88 53.4
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 2.3e-13 80.1 65 61.5
Glyma.10G194700 Glycine max HOM05D003044 ORTHO05D001869 2.3e-13 80.1 66 65.2
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 3.9e-13 79.3 66 63.6
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 5.0e-13 79.0 75 57.3
Sed0010208 Sechium edule HOM05D003044 ORTHO05D001869 5.0e-13 79.0 66 62.1
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.6e-13 78.6 100 49.0
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 6.6e-13 78.6 76 57.9
VMungo0720G0604 Vigna mungo HOM05D003044 ORTHO05D001869 6.6e-13 78.6 84 53.6
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 8.6e-13 78.2 85 54.1
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.1e-12 77.8 80 55.0
Actinidia34738 Actinidia chinensis HOM05D003044 ORTHO05D001869 1.5e-12 77.4 65 61.5
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 1.5e-12 77.4 89 52.8
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 1.5e-12 77.4 91 53.8
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 1.5e-12 77.4 86 52.3
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 1.5e-12 77.4 83 54.2
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 1.5e-12 77.4 83 54.2
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 1.9e-12 77.0 75 56.0
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 1.9e-12 77.0 85 50.6
Hund22391 Selenicereus undatus HOM05D003044 ORTHO05D001869 1.9e-12 77.0 72 55.6
GSVIVG01034600001 Vitis vinifera HOM05D003044 ORTHO05D001869 2.5e-12 76.6 83 50.6
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 3.3e-12 76.3 83 54.2
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 3.3e-12 76.3 86 54.7
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.3e-12 76.3 67 62.7
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 4.3e-12 75.9 67 62.7
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 5.6e-12 75.5 88 51.1
Nn6g34609 Nelumbo nucifera HOM05D003044 ORTHO05D001869 9.5e-12 74.7 91 51.6
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 9.5e-12 74.7 91 51.6
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 9.5e-12 74.7 87 54.0
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 1.2e-11 74.3 91 48.4
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 1.6e-11 73.9 80 47.5
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.1e-11 73.6 65 60.0
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 2.8e-11 73.2 87 50.6
Aa31LG3G3500 Aethionema arabicum HOM05D003044 ORTHO05D001869 3.6e-11 72.8 91 51.6
CDE04G3330 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 3.6e-11 72.8 86 50.0
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 4.7e-11 72.4 67 58.2
COL.COLO4_08015 Corchorus olitorius HOM05D003044 ORTHO05D001869 4.7e-11 72.4 75 54.7
EL10Ac8g19444 Beta vulgaris HOM05D003044 ORTHO05D001869 6.2e-11 72.0 71 60.6
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 1.4e-10 70.9 83 50.6
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.3e-10 70.1 83 47.0
Lsat_1_v5_gn_2_106321 Lactuca sativa HOM05D003044 ORTHO05D001869 3.1e-10 69.7 92 50.0
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 3.1e-10 69.7 65 58.5
HPP92_026330 Vanilla planifolia HOM05D003044 ORTHO05D001869 3.1e-10 69.7 79 54.4
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 5.2e-10 68.9 85 48.2
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 5.2e-10 68.9 83 50.6
Dinv36508 Davidia involucrata HOM05D006756 ORTHO05D001869 6.8e-10 68.6 75 48.0
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 6.8e-10 68.6 93 50.5
FvH4_7g05480 Fragaria vesca HOM05D003044 ORTHO05D001869 8.9e-10 68.2 94 42.6
FAN03G0021 Fragaria x ananassa HOM05D003044 ORTHO05D001869 8.9e-10 68.2 94 42.6
FAN10G0351 Fragaria x ananassa HOM05D003044 ORTHO05D001869 1.2e-09 67.8 94 42.6
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 2.6e-09 66.6 83 44.6
Sc12g0008100 Simmondsia chinensis HOM05D003044 ORTHO05D001869 2.6e-09 66.6 72 50.0
FvH4_7g05440 Fragaria vesca HOM05D003044 ORTHO05D001869 3.4e-09 66.2 76 47.4
FAN03G0009 Fragaria x ananassa HOM05D003044 ORTHO05D001869 3.4e-09 66.2 76 47.4
Peaxi162Scf00519g00028 Petunia axillaris HOM05D003044 ORTHO05D001869 3.4e-09 66.2 84 48.8
HanXRQChr08g0217351 Helianthus annuus HOM05D003044 ORTHO05D001869 4.4e-09 65.9 93 48.4
SGA_v2.0_scaffold90G27707 Striga asiatica HOM05D003044 ORTHO05D001869 7.5e-09 65.1 88 47.7
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 9.8e-09 64.7 61 50.8
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.7e-08 63.9 84 50.0
FAN01G1587 Fragaria x ananassa HOM05D003044 ORTHO05D001869 3.7e-08 62.8 94 40.4
MD15G1171200 Malus domestica HOM05D006756 ORTHO05D001869 3.7e-08 62.8 80 42.5
Oeu015284.1 Olea europaea HOM05D003044 ORTHO05D001869 3.7e-08 62.8 97 45.4
SalBow6G6809 Salvia bowleyana HOM05D003044 ORTHO05D001869 4.9e-08 62.4 63 55.6
Migut.F00829 Erythranthe guttata HOM05D003044 ORTHO05D001869 6.4e-08 62.0 96 42.7
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 6.4e-08 62.0 83 42.2
Cfa003390 Carpinus fangiana HOM05D006756 ORTHO05D001869 8.3e-08 61.6 89 39.3
QL02p088845 Quercus lobata HOM05D006756 ORTHO05D001869 8.3e-08 61.6 75 45.3
MD02G1029800 Malus domestica HOM05D006756 ORTHO05D001869 1.1e-07 61.2 80 41.2
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 1.4e-07 60.8 84 48.8
HanXRQChr07g0195181 Helianthus annuus HOM05D003044 ORTHO05D001869 1.4e-07 60.8 85 49.4
HPP92_018630 Vanilla planifolia HOM05D003044 ORTHO05D001869 1.4e-07 60.8 71 49.3
CSS0003155 Camellia sinensis var. sinensis HOM05D006756 ORTHO05D001869 1.9e-07 60.5 69 47.8
unitig_46.g18649 Utricularia gibba HOM05D003044 ORTHO05D001869 2.4e-07 60.1 80 45.0
Prupe.7G245100 Prunus persica HOM05D006756 ORTHO05D001869 5.4e-07 58.9 73 43.8
TAR625G0109 Trochodendron aralioides HOM05D006756 ORTHO05D001869 5.4e-07 58.9 73 43.8
Cc06_g08320 Coffea canephora HOM05D006756 ORTHO05D001869 7.1e-07 58.5 86 41.9
HanXRQChr02g0049311 Helianthus annuus HOM05D003044 ORTHO05D001869 7.1e-07 58.5 83 47.0
Gorai.010G063000 Gossypium raimondii HOM05D006756 ORTHO05D001869 9.2e-07 58.2 73 49.3
Manes.14G133500 Manihot esculenta HOM05D006756 ORTHO05D001869 9.2e-07 58.2 75 45.3
TAR636G0745 Trochodendron aralioides HOM05D006756 ORTHO05D001869 1.2e-06 57.8 69 43.5
TAR636G2086 Trochodendron aralioides HOM05D006756 ORTHO05D001869 1.2e-06 57.8 69 43.5
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 1.6e-06 57.4 66 50.0
Os03g0788250 Oryza sativa ssp. japonica HOM05D003044 ORTHO05D001869 1.6e-06 57.4 89 40.4
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 1.6e-06 57.4 83 44.6
ClCG06G011280 Citrullus lanatus HOM05D006756 ORTHO05D001869 2.1e-06 57.0 121 37.2
MELO3C010331.2 Cucumis melo HOM05D006756 ORTHO05D001869 2.7e-06 56.6 96 43.8
Zm00001eb060090 Zea mays HOM05D003044 ORTHO05D001869 2.7e-06 56.6 97 35.1
AUR62033063 Chenopodium quinoa HOM05D003044 ORTHO05D001869 3.5e-06 56.2 54 55.6
Gohir.D06G054000 Gossypium hirsutum HOM05D006756 ORTHO05D001869 4.6e-06 55.8 73 47.9
SalBow6G4860 Salvia bowleyana HOM05D003044 ORTHO05D001869 6.0e-06 55.5 63 52.4
Eucgr.C01517 Eucalyptus grandis HOM05D006756 ORTHO05D001869 7.8e-06 55.1 80 40.0
Lsat_1_v5_gn_8_58441 Lactuca sativa HOM05D006756 ORTHO05D001869 7.8e-06 55.1 82 42.7


User provided reference genes

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