Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI18615 Sapria himalayana HOM05D003107 ORTHO05D003092 1.5e-178 629.4 326 100.0
COL.COLO4_24054 Corchorus olitorius HOM05D003107 ORTHO05D003092 3.1e-38 163.3 259 46.7
Manes.03G065000 Manihot esculenta HOM05D003107 ORTHO05D003092 1.5e-37 161.0 262 44.3
Phvul.009G097700 Phaseolus vulgaris HOM05D003107 ORTHO05D003092 2.0e-37 160.6 342 37.1
Sabra06G0193100 Salix brachista HOM05D003107 ORTHO05D003092 2.0e-37 160.6 252 42.9
Lj7A713T53 Lonicera japonica HOM05D003107 ORTHO05D003092 2.6e-37 160.2 331 37.8
Glyma.06G073200 Glycine max HOM05D003107 ORTHO05D003092 4.5e-37 159.5 337 35.9
VMungo1309G0300 Vigna mungo HOM05D003107 ORTHO05D003092 4.5e-37 159.5 326 34.7
Thecc.09G144400 Theobroma cacao HOM05D003107 ORTHO05D003092 1.7e-36 157.5 259 43.6
Duzib187G0318 Durio zibethinus HOM05D003107 ORTHO05D003092 5.0e-36 156.0 252 44.4
Potri.006G246800 Populus trichocarpa HOM05D003107 ORTHO05D003092 8.5e-36 155.2 255 43.9
Atru.chr7.2327 Acer truncatum HOM05D003107 ORTHO05D003092 2.5e-35 153.7 271 41.7
Ca_15699_v3 Cicer arietinum L. HOM05D003107 ORTHO05D003092 3.2e-35 153.3 323 36.5
Medtr3g108010 Medicago truncatula HOM05D003107 ORTHO05D003092 3.2e-35 153.3 332 34.6
GSVIVG01035723001 Vitis vinifera HOM05D003107 ORTHO05D003092 3.2e-35 153.3 366 38.0
PGR031G3499 Punica granatum HOM05D003107 ORTHO05D003092 9.4e-35 151.8 259 46.3
AUR62024841 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.0e-33 148.3 267 38.6
AUR62032378 Chenopodium quinoa HOM05D003107 ORTHO05D003092 1.0e-33 148.3 312 34.0
Haze_21621 Corylus avellana HOM05D003107 ORTHO05D003092 1.4e-33 147.9 329 40.1
QL12p031313 Quercus lobata HOM05D003107 ORTHO05D003092 1.4e-33 147.9 356 35.1
Lj1g0004393 Lotus japonicus HOM05D003107 ORTHO05D003092 1.8e-33 147.5 336 39.3
CANSAT25G0565 Cannabis sativa HOM05D003107 ORTHO05D003092 2.3e-33 147.1 320 38.8
TAR624G0993 Trochodendron aralioides HOM05D003107 ORTHO05D003092 5.1e-33 146.0 370 34.6
Lalb_Chr08g0243801 Lupinus albus HOM05D003107 ORTHO05D003092 6.7e-33 145.6 330 37.6
Cfa013207 Carpinus fangiana HOM05D003107 ORTHO05D003092 1.1e-32 144.8 320 40.0
TPR.G34688 Trifolium pratense HOM05D003107 ORTHO05D003092 1.1e-32 144.8 319 37.9
EL10Ac2g02541 Beta vulgaris HOM05D003107 ORTHO05D003092 1.5e-32 144.4 260 36.9
Duzib150G0475 Durio zibethinus HOM05D003107 ORTHO05D003092 1.5e-32 144.4 320 36.9
CiPaw.08G015500 Carya illinoinensis HOM05D003107 ORTHO05D003092 4.4e-32 142.9 348 34.2
Glyma.04G071900 Glycine max HOM05D003107 ORTHO05D003092 4.4e-32 142.9 244 39.3
Sed0012229 Sechium edule HOM05D003107 ORTHO05D003092 4.4e-32 142.9 296 38.5
Duzib168G1962 Durio zibethinus HOM05D003107 ORTHO05D003092 1.7e-31 141.0 228 47.8
Psat5g027640 Pisum sativum HOM05D003107 ORTHO05D003092 2.2e-31 140.6 331 35.0
Cpa.g.sc91.11 Carica papaya HOM05D003107 ORTHO05D003092 2.8e-31 140.2 242 40.9
vmacro05445 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 4.8e-31 139.4 252 39.3
Ciclev10007403m.g Citrus clementina HOM05D003107 ORTHO05D003092 6.3e-31 139.0 279 38.4
CsaV3_3G046670 Cucumis sativus L. HOM05D003107 ORTHO05D003092 8.2e-31 138.7 276 39.5
FAN20G1668 Fragaria x ananassa HOM05D003107 ORTHO05D003092 1.1e-30 138.3 339 34.2
Aqoxy1G02257 Aquilegia oxysepala HOM05D003107 ORTHO05D003092 5.3e-30 136.0 253 38.7
Actinidia13287 Actinidia chinensis HOM05D003107 ORTHO05D003092 7.0e-30 135.6 244 37.7
Gohir.D05G011200 Gossypium hirsutum HOM05D003107 ORTHO05D003092 1.2e-29 134.8 261 42.9
Gorai.009G011500 Gossypium raimondii HOM05D003107 ORTHO05D003092 1.2e-29 134.8 261 42.9
Potri.018G034500 Populus trichocarpa HOM05D003107 ORTHO05D003092 1.2e-29 134.8 258 44.2
Sed0020655 Sechium edule HOM05D003107 ORTHO05D003092 1.5e-29 134.4 317 39.4
Eucgr.C01815 Eucalyptus grandis HOM05D003107 ORTHO05D003092 2.0e-29 134.0 255 37.6
Sabra18G0035100 Salix brachista HOM05D003107 ORTHO05D003092 3.4e-29 133.3 260 41.5
arahy.Tifrunner.gnm1.ann1.8TMD5Z Arachis hypogaea HOM05D003107 ORTHO05D003092 7.7e-29 132.1 361 34.6
arahy.Tifrunner.gnm1.ann1.YCI793 Arachis hypogaea HOM05D003107 ORTHO05D003092 1.0e-28 131.7 358 34.9
Gohir.A05G010400 Gossypium hirsutum HOM05D003107 ORTHO05D003092 1.0e-28 131.7 262 43.5
Lalb_Chr11g0063981 Lupinus albus HOM05D003107 ORTHO05D003092 1.0e-28 131.7 321 31.2
HanXRQChr03g0078061 Helianthus annuus HOM05D003107 ORTHO05D003092 2.9e-28 130.2 256 37.5
Nitab4.5_0000125g0300 Nicotiana tabacum HOM05D003107 ORTHO05D003092 3.8e-28 129.8 255 38.0
Nitab4.5_0006579g0010 Nicotiana tabacum HOM05D003107 ORTHO05D003092 5.0e-28 129.4 249 39.0
CAN.G21.2 Capsicum annuum HOM05D003107 ORTHO05D003092 1.4e-27 127.9 297 34.7
Prupe.7G018800 Prunus persica HOM05D003107 ORTHO05D003092 3.2e-27 126.7 260 36.2
Gohir.D08G257700 Gossypium hirsutum HOM05D003107 ORTHO05D003092 4.2e-27 126.3 310 35.5
TAR383G1012 Trochodendron aralioides HOM05D003107 ORTHO05D003092 4.2e-27 126.3 345 34.5
BcaC04g19228 Brassica carinata HOM05D003107 ORTHO05D003092 7.2e-27 125.6 249 39.8
FvH4_2g30140 Fragaria vesca HOM05D003107 ORTHO05D003092 7.2e-27 125.6 339 34.5
RcHm_v2.0_Chr6g0312791 Rosa chinensis HOM05D003107 ORTHO05D003092 7.2e-27 125.6 335 35.8
PGSC0003DMG400033626 Solanum tuberosum HOM05D003107 ORTHO05D003092 7.2e-27 125.6 305 34.8
A10p26320 Brassica napus HOM05D003107 ORTHO05D003092 9.4e-27 125.2 248 39.5
BraA10t44689Z Brassica rapa HOM05D003107 ORTHO05D003092 9.4e-27 125.2 248 39.5
Gorai.004G274700 Gossypium raimondii HOM05D003107 ORTHO05D003092 1.2e-26 124.8 250 39.6
FAN15G0271 Fragaria x ananassa HOM05D003107 ORTHO05D003092 2.1e-26 124.0 334 34.4
FAN24G3197 Fragaria x ananassa HOM05D003107 ORTHO05D003092 2.1e-26 124.0 339 34.2
Rhsim02G0187500 Rhododendron simsii HOM05D003107 ORTHO05D003092 2.1e-26 124.0 330 32.4
Sopen08g021720 Solanum pennellii HOM05D003107 ORTHO05D003092 2.1e-26 124.0 287 36.6
ATR0037G033 Amborella trichopoda HOM05D003107 ORTHO05D003092 3.6e-26 123.2 298 32.9
Cc08_g08330 Coffea canephora HOM05D003107 ORTHO05D003092 3.6e-26 123.2 261 40.6
FAN27G2221 Fragaria x ananassa HOM05D003107 ORTHO05D003092 3.6e-26 123.2 341 34.9
MD15G1115600 Malus domestica HOM05D003107 ORTHO05D003092 4.7e-26 122.9 325 35.4
DCAR_023265 Daucus carota HOM05D003107 ORTHO05D003092 6.1e-26 122.5 343 32.1
SalBow8G2039 Salvia bowleyana HOM05D003107 ORTHO05D003092 1.0e-25 121.7 302 35.8
Sp6g32170 Schrenkiella parvula HOM05D003107 ORTHO05D003092 1.0e-25 121.7 247 34.8
C09p65430 Brassica napus HOM05D003107 ORTHO05D003092 1.8e-25 120.9 251 34.7
CDE06G1195 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 1.8e-25 120.9 337 30.6
CDE07G1548 Ceratophyllum demersum HOM05D003107 ORTHO05D003092 2.3e-25 120.6 332 31.9
PSO170G1884 Papaver somniferum HOM05D003107 ORTHO05D003092 3.0e-25 120.2 351 33.9
SalBow8G1653 Salvia bowleyana HOM05D003107 ORTHO05D003092 3.0e-25 120.2 304 36.2
HanXRQChr13g0409611 Helianthus annuus HOM05D003107 ORTHO05D003092 5.2e-25 119.4 245 37.6
Nn2g11838 Nelumbo nucifera HOM05D003107 ORTHO05D003092 5.2e-25 119.4 262 40.1
Solyc08g067790.4 Solanum lycopersicum HOM05D003107 ORTHO05D003092 5.2e-25 119.4 287 35.5
C07p42300 Brassica napus HOM05D003107 ORTHO05D003092 6.7e-25 119.0 325 34.2
Peaxi162Scf00105g01432 Petunia axillaris HOM05D003107 ORTHO05D003092 6.7e-25 119.0 318 33.0
Sc09g0008850 Simmondsia chinensis HOM05D003107 ORTHO05D003092 6.7e-25 119.0 248 37.1
THA.LOC104799220 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 6.7e-25 119.0 262 38.5
PSO017G1142 Papaver somniferum HOM05D003107 ORTHO05D003092 1.1e-24 118.2 351 32.8
BraA06t26545Z Brassica rapa HOM05D003107 ORTHO05D003092 1.5e-24 117.9 266 35.0
AL6G37320 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 2.0e-24 117.5 294 34.0
AL6G22090 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 7.4e-24 115.5 254 33.9
BcaB08g37060 Brassica carinata HOM05D003107 ORTHO05D003092 9.7e-24 115.2 241 39.0
ClCG05G017190 Citrullus lanatus HOM05D003107 ORTHO05D003092 2.2e-23 114.0 263 36.5
Migut.A00276 Erythranthe guttata HOM05D003107 ORTHO05D003092 2.8e-23 113.6 318 34.3
Carub.0006s2338 Capsella rubella HOM05D003107 ORTHO05D003092 3.7e-23 113.2 256 35.9
TWI32G0172 Tripterygium wilfordii HOM05D003107 ORTHO05D003092 3.7e-23 113.2 286 35.0
CSS0021250 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 1.8e-22 110.9 334 35.3
CARHR201800 Cardamine hirsuta HOM05D003107 ORTHO05D003092 1.8e-22 110.9 243 35.0
CSS0009859 Camellia sinensis var. sinensis HOM05D003107 ORTHO05D003092 2.4e-22 110.5 334 35.6
Thhalv10012648m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 2.4e-22 110.5 247 34.0
ECA240G4010 Erigeron canadensis HOM05D003107 ORTHO05D003092 3.1e-22 110.2 272 36.4
vmacro11116 Vaccinium macrocarpon HOM05D003107 ORTHO05D003092 4.1e-22 109.8 251 37.8
MSTRG.11738 Avicennia marina HOM05D003107 ORTHO05D003092 7.0e-22 109.0 337 35.9
BolC7t44759H Brassica oleracea HOM05D003107 ORTHO05D003092 9.1e-22 108.6 338 34.6
ECA233G2849 Erigeron canadensis HOM05D003107 ORTHO05D008984 9.1e-22 108.6 319 32.3
THA.LOC104815043 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 3.5e-21 106.7 249 33.7
THA.LOC104819888 Tarenaya hassleriana HOM05D003107 ORTHO05D003092 1.3e-20 104.8 249 35.3
AT5G11430 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 1.7e-20 104.4 249 32.5
Aa31LG3G15760 Aethionema arabicum HOM05D003107 ORTHO05D003092 2.2e-20 104.0 265 32.1
CARHR115650 Cardamine hirsuta HOM05D003107 ORTHO05D003092 3.8e-20 103.2 245 34.7
Oeu014658.2 Olea europaea HOM05D003107 ORTHO05D003092 3.8e-20 103.2 338 32.8
MD08G1136900 Malus domestica HOM05D003107 ORTHO05D003092 5.0e-20 102.8 285 35.4
AT5G25520 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 1.1e-19 101.7 291 32.0
unitig_578.g16600 Utricularia gibba HOM05D003107 ORTHO05D003092 1.1e-19 101.7 245 32.7
Zm00001eb240410 Zea mays HOM05D003107 ORTHO05D003092 1.1e-19 101.7 330 31.5
MSTRG.14000 Avicennia marina HOM05D003107 ORTHO05D003092 1.5e-19 101.3 328 33.8
SGA_v2.0_scaffold27G11488 Striga asiatica HOM05D003107 ORTHO05D003092 5.5e-19 99.4 261 33.7
A04p19850 Brassica napus HOM05D003107 ORTHO05D003092 2.7e-18 97.1 260 33.1
BraA04t17572Z Brassica rapa HOM05D003107 ORTHO05D003092 2.7e-18 97.1 260 33.1
AL4G17160 Arabidopsis lyrata HOM05D003107 ORTHO05D003092 4.7e-18 96.3 250 32.8
HPP92_014684 Vanilla planifolia HOM05D003107 ORTHO05D003092 2.3e-17 94.0 311 31.5
A06p36230 Brassica napus HOM05D003107 ORTHO05D003092 1.2e-16 91.7 267 35.2
BcaB06g28082 Brassica carinata HOM05D003107 ORTHO05D003092 1.5e-16 91.3 264 33.3
MELO3C003671.2 Cucumis melo HOM05D003107 ORTHO05D003092 1.5e-16 91.3 133 46.6
unitig_85.g27160 Utricularia gibba HOM05D003107 ORTHO05D003092 2.6e-16 90.5 228 31.6
Zm00001eb205470 Zea mays HOM05D003107 ORTHO05D003092 2.6e-16 90.5 236 31.4
BcaC02g08335 Brassica carinata HOM05D003107 ORTHO05D003092 2.8e-15 87.0 256 32.0
C04p55580 Brassica napus HOM05D003107 ORTHO05D003092 2.8e-15 87.0 256 32.0
BolC4t27082H Brassica oleracea HOM05D003107 ORTHO05D003092 2.8e-15 87.0 256 32.0
Lsat_1_v5_gn_6_10880 Lactuca sativa HOM05D003107 ORTHO05D008984 6.3e-15 85.9 337 30.9
Sp4g05210 Schrenkiella parvula HOM05D003107 ORTHO05D003092 1.8e-14 84.3 261 31.0
Os06g0595900 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 3.5e-13 80.1 271 28.4
CARHR187860 Cardamine hirsuta HOM05D003107 ORTHO05D003092 7.7e-13 79.0 238 31.1
AT2G25640 Arabidopsis thaliana HOM05D003107 ORTHO05D003092 1.7e-12 77.8 85 48.2
Os02g0208600 Oryza sativa ssp. japonica HOM05D003107 ORTHO05D003092 3.2e-11 73.6 154 32.5
Actinidia15709 Actinidia chinensis HOM05D003107 ORTHO05D003092 2.3e-09 67.4 63 54.0
SEGI_27893 Sequoiadendron giganteum HOM05D003107 ORTHO05D003092 1.5e-08 64.7 98 40.8
Thhalv10000617m.g Eutrema salsugineum HOM05D003107 ORTHO05D003092 5.7e-08 62.8 80 45.0
Gohir.A08G237100 Gossypium hirsutum HOM05D003107 ORTHO05D003092 1.3e-07 61.6 57 52.6
Hma1.2p1_0497F.1_g166410 Hydrangea macrophylla HOM05D003107 ORTHO05D003092 8.3e-07 58.9 234 26.9


User provided reference genes

Program Settings