Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI17426 Sapria himalayana HOM05D005460 ORTHO05D018279 3.4e-155 551.6 269 100.0
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 3.8e-42 176.0 245 42.9
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 1.8e-36 157.1 254 35.8
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 9.1e-36 154.8 268 36.9
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 1.2e-35 154.5 234 37.2
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 1.2e-35 154.5 234 37.2
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 3.5e-35 152.9 232 37.5
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 2.9e-34 149.8 169 44.4
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 8.6e-34 148.3 239 37.2
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.9e-33 147.1 241 36.9
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.9e-33 147.1 239 37.7
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 2.5e-33 146.7 234 38.0
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 5.5e-33 145.6 241 36.9
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 7.2e-33 145.2 244 37.7
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 2.8e-32 143.3 265 36.6
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 3.6e-32 142.9 253 36.8
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 1.5e-30 137.5 265 35.5
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 2.0e-30 137.1 244 35.2
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 2.6e-30 136.7 244 35.2
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 3.7e-29 132.9 245 35.1
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 6.3e-29 132.1 266 35.7
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 4.1e-28 129.4 253 34.0
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 5.4e-28 129.0 261 33.7
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 9.2e-28 128.3 253 32.8
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 9.2e-28 128.3 254 33.5
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 1.6e-27 127.5 259 36.7
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 3.5e-27 126.3 240 37.5
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 5.9e-27 125.6 250 34.8
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 7.8e-27 125.2 261 34.1
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 1.0e-26 124.8 240 32.5
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 1.0e-26 124.8 254 33.1
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 1.3e-26 124.4 242 32.2
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 3.8e-26 122.9 233 35.2
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 5.0e-26 122.5 234 37.2
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 6.6e-26 122.1 234 37.2
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 2.5e-25 120.2 250 32.8
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 5.6e-25 119.0 253 30.4
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 2.1e-24 117.1 242 32.6
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 2.8e-24 116.7 256 32.0
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 6.1e-24 115.5 238 32.8
vmacro17638 Vaccinium macrocarpon HOM05D005460 ORTHO05D018279 8.0e-24 115.2 229 32.8
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 2.3e-23 113.6 245 32.2
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 2.3e-23 113.6 251 31.1
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 3.0e-23 113.2 244 30.7
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 4.0e-23 112.8 249 32.1
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 4.0e-23 112.8 244 32.0
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 6.8e-23 112.1 243 30.5
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 8.9e-23 111.7 236 32.2
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 3.4e-22 109.8 239 29.7
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 5.7e-22 109.0 233 33.9
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 1.7e-21 107.5 242 31.0
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 1.7e-21 107.5 257 30.4
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 2.2e-21 107.1 233 31.8
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 2.9e-21 106.7 233 31.8
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 3.7e-21 106.3 265 29.1
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 3.7e-21 106.3 257 29.6
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.9e-21 105.9 233 31.3
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 4.9e-21 105.9 237 30.8
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 4.9e-21 105.9 248 30.2
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 8.3e-21 105.1 261 28.7
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 1.4e-20 104.4 264 30.3
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 1.4e-20 104.4 252 29.8
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 1.4e-20 104.4 239 31.8
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 2.4e-20 103.6 233 30.9
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 3.2e-20 103.2 238 31.1
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 4.1e-20 102.8 241 31.1
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 5.4e-20 102.4 249 28.1
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 7.0e-20 102.1 235 29.8
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 7.8e-19 98.6 233 30.5
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 1.7e-18 97.4 243 28.8
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 3.0e-18 96.7 236 30.1
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 6.6e-18 95.5 234 29.9
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 3.3e-17 93.2 232 31.5
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 3.3e-17 93.2 242 26.9
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 4.3e-17 92.8 247 27.1
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 7.3e-17 92.0 257 26.5
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 1.1e-15 88.2 299 26.4
Psat7g070520 Pisum sativum HOM05D005460 ORTHO05D008059 9.8e-14 81.6 218 28.4
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 1.9e-12 77.4 306 23.2
RcHm_v2.0_Chr7g0183721 Rosa chinensis HOM05D005460 ORTHO05D018279 2.0e-11 73.9 164 32.3
Potri.012G063000 Populus trichocarpa HOM05D005460 ORTHO05D018279 1.3e-10 71.2 73 46.6
Ah.11g047420 Amaranthus hybridus HOM05D005460 ORTHO05D018279 2.3e-10 70.5 189 29.6
Hma1.2p1_2037F.1_g311970 Hydrangea macrophylla HOM05D005460 ORTHO05D018279 2.1e-08 63.9 150 32.7


User provided reference genes

Program Settings