Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI12596 Sapria himalayana HOM05D005418 ORTHO05D006724 5.9e-126 454.1 219 100.0
Manes.06G002300 Manihot esculenta HOM05D005418 ORTHO05D006724 1.3e-88 330.1 193 82.4
Manes.14G173200 Manihot esculenta HOM05D005418 ORTHO05D006724 8.4e-88 327.4 193 81.9
GSVIVG01037420001 Vitis vinifera HOM05D005418 ORTHO05D006724 9.3e-87 323.9 193 80.3
Duzib128G1895 Durio zibethinus HOM05D005418 ORTHO05D006724 1.2e-86 323.6 193 80.8
FAN08G1767 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.2e-86 323.6 193 80.8
Cpa.g.sc64.48 Carica papaya HOM05D005418 ORTHO05D006724 2.7e-86 322.4 191 81.2
RcHm_v2.0_Chr7g0177871 Rosa chinensis HOM05D005418 ORTHO05D006724 2.7e-86 322.4 193 80.3
Prupe.5G237600 Prunus persica HOM05D005418 ORTHO05D006724 3.5e-86 322.0 193 80.8
Gohir.A05G289300 Gossypium hirsutum HOM05D005418 ORTHO05D006724 6.0e-86 321.2 193 79.8
Gohir.D05G290700 Gossypium hirsutum HOM05D005418 ORTHO05D006724 6.0e-86 321.2 193 79.8
Gorai.009G305700 Gossypium raimondii HOM05D005418 ORTHO05D006724 6.0e-86 321.2 193 79.8
FAN13G2408 Fragaria x ananassa HOM05D005418 ORTHO05D006724 7.8e-86 320.9 193 80.3
FAN18G2901 Fragaria x ananassa HOM05D005418 ORTHO05D006724 1.0e-85 320.5 193 79.8
Thecc.10G098100 Theobroma cacao HOM05D005418 ORTHO05D006724 1.3e-85 320.1 193 79.8
TAR365G0064 Trochodendron aralioides HOM05D005418 ORTHO05D006724 1.7e-85 319.7 193 78.8
Ciclev10005966m.g Citrus clementina HOM05D005418 ORTHO05D006724 2.3e-85 319.3 193 78.2
Lalb_Chr22g0353611 Lupinus albus HOM05D005418 ORTHO05D006724 2.3e-85 319.3 193 79.8
Cfa005619 Carpinus fangiana HOM05D005418 ORTHO05D006724 3.0e-85 318.9 193 79.8
COL.COLO4_07665 Corchorus olitorius HOM05D005418 ORTHO05D006724 5.1e-85 318.2 193 77.7
MD14G1240000 Malus domestica HOM05D005418 ORTHO05D006724 5.1e-85 318.2 193 79.8
arahy.Tifrunner.gnm1.ann1.20VKS9 Arachis hypogaea HOM05D005418 ORTHO05D006724 1.1e-84 317.0 191 79.1
Nn1g06291 Nelumbo nucifera HOM05D005418 ORTHO05D006724 1.5e-84 316.6 193 79.3
CAN.G637.36 Capsicum annuum HOM05D005418 ORTHO05D006724 1.9e-84 316.2 193 77.7
Lj2g0014184 Lotus japonicus HOM05D005418 ORTHO05D006724 1.9e-84 316.2 193 78.2
Potri.015G036600 Populus trichocarpa HOM05D005418 ORTHO05D006724 1.9e-84 316.2 193 77.7
THA.LOC104812146 Tarenaya hassleriana HOM05D005418 ORTHO05D006724 1.9e-84 316.2 191 78.5
Ca_25975_v3 Cicer arietinum L. HOM05D005418 ORTHO05D006724 2.5e-84 315.8 193 79.3
PGR102G0744 Punica granatum HOM05D005418 ORTHO05D006724 3.3e-84 315.5 194 78.9
PGSC0003DMG400033680 Solanum tuberosum HOM05D005418 ORTHO05D006724 3.3e-84 315.5 193 76.7
QL10p031782 Quercus lobata HOM05D005418 ORTHO05D006724 4.3e-84 315.1 192 78.6
CiPaw.15G148000 Carya illinoinensis HOM05D005418 ORTHO05D006724 7.3e-84 314.3 193 78.2
Glyma.07G106200 Glycine max HOM05D005418 ORTHO05D006724 7.3e-84 314.3 193 77.7
Solyc03g097990.3 Solanum lycopersicum HOM05D005418 ORTHO05D006724 1.3e-83 313.5 193 76.7
Sopen03g028700 Solanum pennellii HOM05D005418 ORTHO05D006724 1.3e-83 313.5 193 76.7
TWI60G0409 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 1.6e-83 313.2 193 78.2
PSO210G6190 Papaver somniferum HOM05D005418 ORTHO05D006724 2.1e-83 312.8 193 76.7
Atru.chr9.1604 Acer truncatum HOM05D005418 ORTHO05D006724 3.6e-83 312.0 193 76.7
TPR.G14843 Trifolium pratense HOM05D005418 ORTHO05D006724 3.6e-83 312.0 193 77.2
vmacro17855 Vaccinium macrocarpon HOM05D005418 ORTHO05D006724 3.6e-83 312.0 193 77.7
CSS0002924 Camellia sinensis var. sinensis HOM05D005418 ORTHO05D006724 4.8e-83 311.6 193 78.2
CANSAT78G1374 Cannabis sativa HOM05D005418 ORTHO05D006724 6.2e-83 311.2 193 76.2
CARHR066900 Cardamine hirsuta HOM05D005418 ORTHO05D006724 6.2e-83 311.2 191 77.0
AL2G33630 Arabidopsis lyrata HOM05D005418 ORTHO05D006724 8.1e-83 310.8 191 77.0
Sed0019275 Sechium edule HOM05D005418 ORTHO05D006724 8.1e-83 310.8 193 77.2
BcaB03g15730 Brassica carinata HOM05D005418 ORTHO05D006724 1.1e-82 310.5 191 76.4
Thhalv10019100m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 1.1e-82 310.5 191 77.0
Aqoxy5G00519 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 1.4e-82 310.1 193 76.7
Sp5g29010 Schrenkiella parvula HOM05D005418 ORTHO05D006724 1.4e-82 310.1 191 76.4
COL.COLO4_34153 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.8e-82 309.7 193 76.2
Aqoxy6G02988 Aquilegia oxysepala HOM05D005418 ORTHO05D006724 2.4e-82 309.3 193 76.2
BcaC08g45620 Brassica carinata HOM05D005418 ORTHO05D006724 2.4e-82 309.3 191 76.4
A07p29640 Brassica napus HOM05D005418 ORTHO05D006724 2.4e-82 309.3 191 76.4
BraA07t30605Z Brassica rapa HOM05D005418 ORTHO05D006724 2.4e-82 309.3 191 76.4
Carub.0002s2057 Capsella rubella HOM05D005418 ORTHO05D006724 2.4e-82 309.3 191 76.4
AT1G73820 Arabidopsis thaliana HOM05D005418 ORTHO05D006724 3.1e-82 308.9 191 76.4
Peaxi162Scf00171g00918 Petunia axillaris HOM05D005418 ORTHO05D006724 3.1e-82 308.9 193 75.1
Phvul.004G147300 Phaseolus vulgaris HOM05D005418 ORTHO05D006724 3.1e-82 308.9 193 76.2
arahy.Tifrunner.gnm1.ann1.XQM4JL Arachis hypogaea HOM05D005418 ORTHO05D006724 4.0e-82 308.5 191 78.5
HanXRQChr14g0431131 Helianthus annuus HOM05D005418 ORTHO05D006724 5.3e-82 308.1 191 75.4
VMungo0464G1360 Vigna mungo HOM05D005418 ORTHO05D006724 5.3e-82 308.1 193 75.6
BolC6t38495H Brassica oleracea HOM05D005418 ORTHO05D006724 6.9e-82 307.8 191 75.9
CsaV3_1G004910 Cucumis sativus L. HOM05D005418 ORTHO05D006724 6.9e-82 307.8 193 77.2
Psat1g028800 Pisum sativum HOM05D005418 ORTHO05D006724 6.9e-82 307.8 193 76.2
MELO3C001923.2 Cucumis melo HOM05D005418 ORTHO05D006724 1.2e-81 307.0 193 77.2
SEGI_01195 Sequoiadendron giganteum HOM05D005418 ORTHO05D006724 1.2e-81 307.0 191 75.4
Hund01906 Selenicereus undatus HOM05D005418 ORTHO05D006724 1.5e-81 306.6 199 75.4
TWI15G1138 Tripterygium wilfordii HOM05D005418 ORTHO05D006724 2.6e-81 305.8 193 76.2
C06p33820 Brassica napus HOM05D005418 ORTHO05D006724 3.4e-81 305.4 191 75.4
MSTRG.9356 Avicennia marina HOM05D005418 ORTHO05D006724 4.5e-81 305.1 193 74.6
Medtr0332s0040 Medicago truncatula HOM05D005418 ORTHO05D006724 4.5e-81 305.1 189 77.2
SalBow1G6390 Salvia bowleyana HOM05D005418 ORTHO05D006724 5.8e-81 304.7 193 74.1
Cc04_g09290 Coffea canephora HOM05D005418 ORTHO05D006724 1.3e-80 303.5 193 75.1
CDE12G0113 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 3.8e-80 302.0 193 75.1
AUR62036432 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.4e-79 300.1 209 71.3
Actinidia09063 Actinidia chinensis HOM05D005418 ORTHO05D006724 1.9e-79 299.7 191 75.9
Lsat_1_v5_gn_2_11960 Lactuca sativa HOM05D005418 ORTHO05D006724 1.9e-79 299.7 184 75.5
Migut.D01215 Erythranthe guttata HOM05D005418 ORTHO05D006724 4.2e-79 298.5 193 72.0
ECA238G0283 Erigeron canadensis HOM05D005418 ORTHO05D006724 9.3e-79 297.4 188 73.9
Nitab4.5_0006110g0060 Nicotiana tabacum HOM05D005418 ORTHO05D006724 9.3e-79 297.4 213 69.5
Nitab4.5_0000430g0100 Nicotiana tabacum HOM05D005418 ORTHO05D006724 1.2e-78 297.0 213 69.5
ClCG04G012830 Citrullus lanatus HOM05D005418 ORTHO05D006724 2.1e-78 296.2 213 70.0
SGA_v2.0_scaffold40G15645 Striga asiatica HOM05D005418 ORTHO05D006724 7.9e-78 294.3 193 72.5
unitig_899.g14817 Utricularia gibba HOM05D005418 ORTHO05D006724 1.0e-77 293.9 193 72.5
Aa31LG4G11570 Aethionema arabicum HOM05D005418 ORTHO05D006724 1.7e-77 293.1 172 81.4
Actinidia06835 Actinidia chinensis HOM05D005418 ORTHO05D006724 3.0e-77 292.4 224 67.0
ATR0827G099 Amborella trichopoda HOM05D005418 ORTHO05D006724 8.7e-77 290.8 178 76.4
Sabra15G0030200 Salix brachista HOM05D005418 ORTHO05D006724 1.1e-76 290.4 234 62.8
Mapoly0058s0033 Marchantia polymorpha HOM05D005418 ORTHO05D006724 1.5e-76 290.0 191 71.2
Thhalv10019803m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 9.6e-76 287.3 191 73.8
Lj9C416T2 Lonicera japonica HOM05D005418 ORTHO05D006724 2.8e-75 285.8 193 73.1
Os12g0168200 Oryza sativa ssp. japonica HOM05D005418 ORTHO05D006724 6.2e-75 284.6 194 66.0
Pp3c8_14260 Physcomitrium patens HOM05D005418 ORTHO05D006724 6.2e-75 284.6 193 69.9
Zm00001eb139180 Zea mays HOM05D005418 ORTHO05D006724 2.4e-74 282.7 199 64.8
Pp3c23_19050 Physcomitrium patens HOM05D005418 ORTHO05D006724 4.0e-74 282.0 193 68.9
FvH4_5g17750 Fragaria vesca HOM05D005418 ORTHO05D006724 5.3e-74 281.6 160 84.4
MBI17_g10951_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.2e-73 280.4 173 76.3
PSO832G3604 Papaver somniferum HOM05D005418 ORTHO05D006724 1.3e-72 276.9 193 70.5
SMO232G0125 Selaginella moellendorffii HOM05D005418 ORTHO05D006724 1.1e-71 273.9 194 66.5
MD06G1233000 Malus domestica HOM05D005418 ORTHO05D006724 2.4e-71 272.7 209 65.6
HPP92_026203 Vanilla planifolia HOM05D005418 ORTHO05D006724 2.7e-70 269.2 158 81.0
Sabra15G0031100 Salix brachista HOM05D005418 ORTHO05D006724 1.3e-69 266.9 296 49.7
DCAR_011383 Daucus carota HOM05D000073 ORTHO05D000033 1.8e-69 266.5 159 78.6
Rhsim08G0113500 Rhododendron simsii HOM05D005418 ORTHO05D006724 9.6e-68 260.8 274 53.3
CBR_g52356 Chara braunii HOM05D005418 ORTHO05D006724 9.0e-66 254.2 169 69.2
Hma1.2p1_0471F.1_g159370 Hydrangea macrophylla HOM05D005418 ORTHO05D006724 1.1e-63 247.3 282 50.7
Haze_15514 Corylus avellana HOM05D005418 ORTHO05D006724 1.4e-55 220.3 119 86.6
CDE11G0106 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 4.2e-55 218.8 119 86.6
MBI17_g45323_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 1.3e-53 213.8 119 84.0
PRCOL_00006990 Prasinoderma coloniale HOM05D005418 ORTHO05D006724 2.4e-50 203.0 196 50.0
Cre02.g145300 Chlamydomonas reinhardtii HOM05D005418 ORTHO05D006724 4.5e-49 198.7 178 53.4
Pp3c24_6390 Physcomitrium patens HOM05D005418 ORTHO05D006724 5.9e-49 198.4 120 78.3
HPP92_016144 Vanilla planifolia HOM05D005418 ORTHO05D006724 7.7e-49 198.0 134 70.9
AUR62017076 Chenopodium quinoa HOM05D005418 ORTHO05D006724 1.2e-46 190.7 123 74.0
EL10Ac4g07599 Beta vulgaris HOM05D005418 ORTHO05D006724 1.3e-43 180.6 123 69.9
Thhalv10019340m.g Eutrema salsugineum HOM05D005418 ORTHO05D006724 9.1e-42 174.5 114 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1040 Anthoceros agrestis HOM05D005418 ORTHO05D006724 1.3e-40 170.6 122 64.8
Dinv09076 Davidia involucrata HOM05D005418 ORTHO05D006724 2.2e-40 169.9 114 74.6
MCO08G311 Micromonas commoda HOM05D005418 ORTHO05D006724 2.9e-40 169.5 174 48.9
PGSC0003DMG400019995 Solanum tuberosum HOM05D005418 ORTHO05D006724 1.6e-38 163.7 98 76.5
CDE01G0467 Ceratophyllum demersum HOM05D005418 ORTHO05D006724 7.9e-38 161.4 92 81.5
Sc12g0008750 Simmondsia chinensis HOM05D005418 ORTHO05D006724 7.4e-36 154.8 112 64.3
Cfa023691 Carpinus fangiana HOM05D005418 ORTHO05D006724 3.1e-34 149.4 188 41.5
Oeu036611.1 Olea europaea HOM05D005418 ORTHO05D006724 6.5e-32 141.7 89 76.4
Ah.06g181320 Amaranthus hybridus HOM05D005418 ORTHO05D006724 1.8e-29 133.7 72 83.3
EL10Ac4g07600 Beta vulgaris HOM05D005418 ORTHO05D006724 3.0e-29 132.9 75 78.7
Sc12g0008760 Simmondsia chinensis HOM05D005418 ORTHO05D006724 9.7e-28 127.9 70 82.9
A07p39670 Brassica napus HOM05D005418 ORTHO05D006724 8.2e-27 124.8 85 71.8
BraA07t31516Z Brassica rapa HOM05D005418 ORTHO05D006724 8.2e-27 124.8 85 71.8
BcaC08g46801 Brassica carinata HOM05D005418 ORTHO05D006724 9.1e-26 121.3 70 78.6
C06p47960 Brassica napus HOM05D005418 ORTHO05D006724 9.1e-26 121.3 70 78.6
BolC6t39831H Brassica oleracea HOM05D005418 ORTHO05D006724 9.1e-26 121.3 70 78.6
Dinv09075 Davidia involucrata HOM05D005418 ORTHO05D006724 1.3e-24 117.5 64 82.8
COL.COLO4_32865 Corchorus olitorius HOM05D005418 ORTHO05D006724 2.2e-16 90.1 58 75.9
Eucgr.J01305 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.2e-14 84.3 74 58.1
COL.COLO4_34165 Corchorus olitorius HOM05D005418 ORTHO05D006724 1.7e-11 73.9 55 67.3
Eucgr.J01328 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.7e-11 73.9 97 44.3
Eucgr.J01334 Eucalyptus grandis HOM05D005418 ORTHO05D006724 1.7e-11 73.9 97 44.3
Sabra15G0030300 Salix brachista HOM05D005418 ORTHO05D012650 1.1e-10 71.2 40 82.5
COL.COLO4_07708 Corchorus olitorius HOM05D005418 ORTHO05D006724 4.1e-10 69.3 54 63.0
COL.COLO4_23669 Corchorus olitorius HOM05D005418 ORTHO05D158711 4.5e-09 65.9 123 38.2
MBI17_g40296_MAGBIO Magnolia biondii HOM05D005418 ORTHO05D006724 5.6e-07 58.9 93 38.7


User provided reference genes

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