Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10919 Sapria himalayana HOM05D001537 ORTHO05D013980 1.9e-113 412.5 214 100.0
Manes.11G047500 Manihot esculenta HOM05D001537 ORTHO05D002595 3.7e-24 115.9 233 37.3
Potri.001G180200 Populus trichocarpa HOM05D001537 ORTHO05D002595 3.9e-21 105.9 235 37.9
Haze_16429 Corylus avellana HOM05D001537 ORTHO05D002595 1.2e-19 100.9 240 35.0
QL05p024197 Quercus lobata HOM05D001537 ORTHO05D002595 3.6e-19 99.4 232 36.6
Cfa002066 Carpinus fangiana HOM05D001537 ORTHO05D002595 8.1e-19 98.2 240 36.2
TWI12G1035 Tripterygium wilfordii HOM05D001537 ORTHO05D002595 8.1e-19 98.2 233 36.9
Prupe.3G071000 Prunus persica HOM05D001537 ORTHO05D002595 2.3e-18 96.7 232 37.5
MD17G1195000 Malus domestica HOM05D001537 ORTHO05D002595 5.2e-18 95.5 224 37.1
Atru.chr1.3271 Acer truncatum HOM05D001537 ORTHO05D002595 6.8e-18 95.1 237 35.0
GSVIVG01017107001 Vitis vinifera HOM05D001537 ORTHO05D013980 1.5e-17 94.0 233 33.5
RcHm_v2.0_Chr2g0137871 Rosa chinensis HOM05D001537 ORTHO05D002595 2.6e-17 93.2 227 35.2
Actinidia08978 Actinidia chinensis HOM05D001537 ORTHO05D002595 9.9e-17 91.3 235 33.2
EL10Ac9g22000 Beta vulgaris HOM05D001537 ORTHO05D002595 1.1e-15 87.8 231 33.8
TAR636G3516 Trochodendron aralioides HOM05D001537 ORTHO05D002595 1.4e-15 87.4 249 33.3
Eucgr.F03013 Eucalyptus grandis HOM05D001537 ORTHO05D002595 1.9e-15 87.0 244 34.0
Dinv30509 Davidia involucrata HOM05D001537 ORTHO05D002595 5.4e-15 85.5 231 33.3
Duzib235G1517 Durio zibethinus HOM05D001537 ORTHO05D002595 9.2e-15 84.7 230 35.2
CANSAT56G0841 Cannabis sativa HOM05D001537 ORTHO05D002595 1.2e-14 84.3 210 33.3
COL.COLO4_30371 Corchorus olitorius HOM05D001537 ORTHO05D002595 1.2e-14 84.3 62 69.4
Ah.01g021390 Amaranthus hybridus HOM05D001537 ORTHO05D002595 1.6e-14 84.0 223 33.2
PGR102G0923 Punica granatum HOM05D001537 ORTHO05D002595 1.6e-14 84.0 61 68.9
Nn8g39217 Nelumbo nucifera HOM05D001537 ORTHO05D002595 3.5e-14 82.8 217 32.3
Rhsim08G0221300 Rhododendron simsii HOM05D001537 ORTHO05D002595 1.3e-13 80.9 225 32.4
Lsat_1_v5_gn_4_103661 Lactuca sativa HOM05D001537 ORTHO05D002595 1.7e-13 80.5 206 30.1
ClCG09G002140 Citrullus lanatus HOM05D001537 ORTHO05D002595 3.9e-13 79.3 114 42.1
HanXRQChr09g0275231 Helianthus annuus HOM05D001537 ORTHO05D002595 3.9e-13 79.3 214 33.6
MELO3C024231.2 Cucumis melo HOM05D001537 ORTHO05D002595 5.1e-13 79.0 108 46.3
Sed0016827 Sechium edule HOM05D001537 ORTHO05D002595 5.1e-13 79.0 62 61.3
Lj3g0003193 Lotus japonicus HOM05D001537 ORTHO05D002595 6.6e-13 78.6 109 48.6
Hma1.2p1_0092F.1_g046630 Hydrangea macrophylla HOM05D001537 ORTHO05D013980 8.6e-13 78.2 210 33.3
Migut.I00865 Erythranthe guttata HOM05D001537 ORTHO05D002595 1.9e-12 77.0 205 33.7
FAN05G3427 Fragaria x ananassa HOM05D001537 ORTHO05D002595 2.5e-12 76.6 148 37.8
Cc04_g03430 Coffea canephora HOM05D001537 ORTHO05D002595 4.3e-12 75.9 231 34.2
Hund06612 Selenicereus undatus HOM05D001537 ORTHO05D002595 5.6e-12 75.5 225 31.6
Phvul.005G171300 Phaseolus vulgaris HOM05D001537 ORTHO05D002595 9.6e-12 74.7 216 30.6
QL05p024162 Quercus lobata HOM05D001537 ORTHO05D013980 9.6e-12 74.7 82 54.9
Sc21g0005110 Simmondsia chinensis HOM05D001537 ORTHO05D002595 9.6e-12 74.7 236 31.4
CsaV3_7G033170 Cucumis sativus L. HOM05D001537 ORTHO05D002595 1.2e-11 74.3 114 41.2
AUR62016445 Chenopodium quinoa HOM05D001537 ORTHO05D002595 2.1e-11 73.6 231 31.2
Oeu063977.2 Olea europaea HOM05D001537 ORTHO05D002595 2.1e-11 73.6 210 31.9
TPR.G37206 Trifolium pratense HOM05D001537 ORTHO05D002595 2.1e-11 73.6 259 27.4
ECA232G0385 Erigeron canadensis HOM05D001537 ORTHO05D002595 2.8e-11 73.2 99 42.4
FvH4_6g31180 Fragaria vesca HOM05D001537 ORTHO05D002595 2.8e-11 73.2 148 35.8
Medtr2g102150 Medicago truncatula HOM05D001537 ORTHO05D002595 2.8e-11 73.2 214 32.2
TPR.G37208 Trifolium pratense HOM05D001537 ORTHO05D002595 2.8e-11 73.2 106 44.3
PSO210G1376 Papaver somniferum HOM05D001537 ORTHO05D002595 3.6e-11 72.8 150 36.0
QL05p024080 Quercus lobata HOM05D001537 ORTHO05D013980 3.6e-11 72.8 171 33.3
DCAR_016222 Daucus carota HOM05D001537 ORTHO05D002595 4.7e-11 72.4 217 32.3
FAN14G4499 Fragaria x ananassa HOM05D001537 ORTHO05D002595 8.1e-11 71.6 147 36.1
Lj5A60G62 Lonicera japonica HOM05D001537 ORTHO05D013980 8.1e-11 71.6 160 35.6
Aqoxy7G03786 Aquilegia oxysepala HOM05D001537 ORTHO05D002595 1.1e-10 71.2 62 58.1
Glyma.13G359400 Glycine max HOM05D001537 ORTHO05D002595 1.1e-10 71.2 217 31.8
Gohir.D06G194400 Gossypium hirsutum HOM05D001537 ORTHO05D002595 1.1e-10 71.2 62 58.1
MSTRG.11077 Avicennia marina HOM05D001537 ORTHO05D002595 1.4e-10 70.9 58 62.1
Lalb_Chr22g0351281 Lupinus albus HOM05D001537 ORTHO05D002595 1.4e-10 70.9 61 57.4
Sopen03g039070 Solanum pennellii HOM05D001537 ORTHO05D002595 1.8e-10 70.5 62 56.5
HPP92_022952 Vanilla planifolia HOM05D001537 ORTHO05D002595 1.8e-10 70.5 221 32.1
Psat5g298960 Pisum sativum HOM05D001537 ORTHO05D002595 2.4e-10 70.1 214 30.8
CAN.G438.67 Capsicum annuum HOM05D001537 ORTHO05D002595 3.1e-10 69.7 108 41.7
SalBow2G3154 Salvia bowleyana HOM05D001537 ORTHO05D002595 3.1e-10 69.7 210 30.5
VMungo1080G0222 Vigna mungo HOM05D001537 ORTHO05D002595 3.1e-10 69.7 90 47.8
Nitab4.5_0000671g0080 Nicotiana tabacum HOM05D001537 ORTHO05D002595 4.0e-10 69.3 121 38.8
SGA_v2.0_scaffold37G14822 Striga asiatica HOM05D001537 ORTHO05D002595 4.0e-10 69.3 58 58.6
vmacro18913 Vaccinium macrocarpon HOM05D001537 ORTHO05D002595 4.0e-10 69.3 226 31.9
Ca_01115_v3 Cicer arietinum L. HOM05D001537 ORTHO05D002595 6.9e-10 68.6 218 28.0
arahy.Tifrunner.gnm1.ann1.I8FNU5 Arachis hypogaea HOM05D001537 ORTHO05D002595 8.9e-10 68.2 94 46.8
arahy.Tifrunner.gnm1.ann1.YVS4XZ Arachis hypogaea HOM05D001537 ORTHO05D002595 8.9e-10 68.2 94 46.8
THA.LOC104812517 Tarenaya hassleriana HOM05D001537 ORTHO05D002595 8.9e-10 68.2 61 49.2
Gorai.010G228200 Gossypium raimondii HOM05D001537 ORTHO05D002595 1.2e-09 67.8 209 30.1
Gohir.A06G188300 Gossypium hirsutum HOM05D001537 ORTHO05D002595 1.5e-09 67.4 212 31.6
Solyc03g120200.2 Solanum lycopersicum HOM05D001537 ORTHO05D002595 1.5e-09 67.4 139 36.0
Peaxi162Scf00015g00339 Petunia axillaris HOM05D001537 ORTHO05D002595 2.0e-09 67.0 106 40.6
unitig_62.g23603 Utricularia gibba HOM05D001537 ORTHO05D002595 2.0e-09 67.0 60 55.0
Sp5g35730 Schrenkiella parvula HOM05D001537 ORTHO05D002595 3.4e-09 66.2 148 32.4
Thhalv10018072m.g Eutrema salsugineum HOM05D001537 ORTHO05D002595 4.4e-09 65.9 149 32.2
CiPaw.01G239300 Carya illinoinensis HOM05D001537 ORTHO05D002595 5.8e-09 65.5 237 31.6
Aa31LG4G260 Aethionema arabicum HOM05D001537 ORTHO05D002595 1.3e-08 64.3 163 32.5
AL2G41590 Arabidopsis lyrata HOM05D001537 ORTHO05D002595 1.7e-08 63.9 150 30.7
CARHR074520 Cardamine hirsuta HOM05D001537 ORTHO05D002595 1.7e-08 63.9 145 33.1
A07p26410 Brassica napus HOM05D001537 ORTHO05D002595 2.9e-08 63.2 59 50.8
BraA07t30285Z Brassica rapa HOM05D001537 ORTHO05D002595 2.9e-08 63.2 59 50.8
C06p28800 Brassica napus HOM05D001537 ORTHO05D002595 4.9e-08 62.4 152 33.6
Carub.0002s2755 Capsella rubella HOM05D001537 ORTHO05D002595 6.4e-08 62.0 150 30.0
Nitab4.5_0005851g0070 Nicotiana tabacum HOM05D001537 ORTHO05D002595 6.4e-08 62.0 210 29.5
AUR62011630 Chenopodium quinoa HOM05D001537 ORTHO05D002595 1.9e-07 60.5 254 28.0
BcaC08g47564 Brassica carinata HOM05D001537 ORTHO05D002595 4.2e-07 59.3 102 37.3
C06p54320 Brassica napus HOM05D001537 ORTHO05D002595 4.2e-07 59.3 146 30.1
BolC6t40443H Brassica oleracea HOM05D001537 ORTHO05D002595 4.2e-07 59.3 146 30.1
ATR1120G122 Amborella trichopoda HOM05D001537 ORTHO05D002595 3.5e-06 56.2 68 44.1


User provided reference genes

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