Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10392 Sapria himalayana HOM05D002159 ORTHO05D005625 2.7e-97 358.6 173 100.0
Manes.01G126800 Manihot esculenta HOM05D002159 ORTHO05D005625 3.8e-59 231.9 169 69.8
Cpa.g.c26789.4 Carica papaya HOM05D002159 ORTHO05D005625 1.9e-58 229.6 169 68.6
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 2.5e-58 229.2 169 69.2
MD07G1272900 Malus domestica HOM05D002159 ORTHO05D005625 4.2e-58 228.4 169 69.2
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 9.3e-58 227.3 169 66.3
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.6e-57 226.5 169 68.0
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 2.1e-57 226.1 169 68.6
Hma1.2p1_1604F.1_g293320 Hydrangea macrophylla HOM05D002159 ORTHO05D005625 2.1e-57 226.1 169 67.5
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 2.1e-57 226.1 169 68.0
Cc02_g02800 Coffea canephora HOM05D002159 ORTHO05D005625 2.7e-57 225.7 169 68.0
Thecc.03G179100 Theobroma cacao HOM05D002159 ORTHO05D005625 2.7e-57 225.7 169 68.6
Solyc03g025540.3 Solanum lycopersicum HOM05D002159 ORTHO05D005625 4.6e-57 224.9 169 66.9
Sopen03g004380 Solanum pennellii HOM05D002159 ORTHO05D005625 4.6e-57 224.9 169 66.9
VMungo0464G0478 Vigna mungo HOM05D002159 ORTHO05D005625 4.6e-57 224.9 169 66.9
Lj2g0019958 Lotus japonicus HOM05D002159 ORTHO05D005625 6.0e-57 224.6 169 68.0
AL6G35190 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.0e-56 223.8 169 66.9
Glyma.16G182300 Glycine max HOM05D002159 ORTHO05D005625 1.0e-56 223.8 169 66.9
Lsat_1_v5_gn_2_132660 Lactuca sativa HOM05D002159 ORTHO05D005625 1.0e-56 223.8 169 68.6
unitig_26.g10199 Utricularia gibba HOM05D002159 ORTHO05D005625 1.3e-56 223.4 169 66.3
MELO3C006919.2 Cucumis melo HOM05D002159 ORTHO05D005625 1.8e-56 223.0 169 68.0
SalBow2G1087 Salvia bowleyana HOM05D002159 ORTHO05D005625 1.8e-56 223.0 169 66.9
AT5G23880 Arabidopsis thaliana HOM05D002159 ORTHO05D005625 2.3e-56 222.6 169 66.3
ClCG05G008140 Citrullus lanatus HOM05D002201 ORTHO05D005625 2.3e-56 222.6 169 67.5
CsaV3_3G017220 Cucumis sativus L. HOM05D002159 ORTHO05D005625 2.3e-56 222.6 169 68.0
Dinv28421 Davidia involucrata HOM05D002159 ORTHO05D005625 2.3e-56 222.6 169 66.9
Atru.chr1.430 Acer truncatum HOM05D002159 ORTHO05D005625 3.0e-56 222.2 169 66.3
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 3.9e-56 221.9 169 67.5
GSVIVG01028919001 Vitis vinifera HOM05D002159 ORTHO05D005625 3.9e-56 221.9 169 65.7
CiPaw.03G108100 Carya illinoinensis HOM05D002159 ORTHO05D005625 5.1e-56 221.5 169 66.9
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 5.1e-56 221.5 169 66.9
Glyma.09G136900 Glycine max HOM05D002159 ORTHO05D005625 5.1e-56 221.5 169 66.3
Lalb_Chr03g0034671 Lupinus albus HOM05D002159 ORTHO05D005625 5.1e-56 221.5 169 66.3
Ciclev10004414m.g Citrus clementina HOM05D002159 ORTHO05D005625 6.7e-56 221.1 169 66.9
Duzib084G0847 Durio zibethinus HOM05D002159 ORTHO05D005625 8.7e-56 220.7 171 67.3
Migut.F01111 Erythranthe guttata HOM05D002159 ORTHO05D005625 8.7e-56 220.7 169 66.9
Prupe.2G296200 Prunus persica HOM05D002159 ORTHO05D005625 8.7e-56 220.7 169 66.9
TAR629G0581 Trochodendron aralioides HOM05D002159 ORTHO05D005625 8.7e-56 220.7 169 65.1
EL10Ac3g05612 Beta vulgaris HOM05D002159 ORTHO05D005625 1.1e-55 220.3 168 67.9
Carub.0006s2160 Capsella rubella HOM05D002159 ORTHO05D005625 1.1e-55 220.3 169 65.7
TWI34G0379 Tripterygium wilfordii HOM05D002159 ORTHO05D005625 1.1e-55 220.3 169 66.9
Potri.001G231800 Populus trichocarpa HOM05D002159 ORTHO05D005625 1.5e-55 219.9 169 66.9
C07p43800 Brassica napus HOM05D002159 ORTHO05D005625 1.9e-55 219.5 169 65.7
BolC7t44909H Brassica oleracea HOM05D002159 ORTHO05D005625 1.9e-55 219.5 169 65.7
Thhalv10003707m.g Eutrema salsugineum HOM05D002159 ORTHO05D005625 1.9e-55 219.5 169 65.1
RcHm_v2.0_Chr1g0377671 Rosa chinensis HOM05D002159 ORTHO05D005625 1.9e-55 219.5 169 66.9
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 1.9e-55 219.5 169 65.1
BcaNung05469 Brassica carinata HOM05D002159 ORTHO05D005625 2.5e-55 219.2 169 65.7
CSS0008751 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 2.5e-55 219.2 169 65.7
CSS0044503 Camellia sinensis var. sinensis HOM05D002159 ORTHO05D005625 2.5e-55 219.2 169 65.7
Phvul.004G114000 Phaseolus vulgaris HOM05D002159 ORTHO05D005625 2.5e-55 219.2 169 65.7
Sabra16G0139100 Salix brachista HOM05D002159 ORTHO05D005625 2.5e-55 219.2 169 66.3
HanXRQChr14g0462121 Helianthus annuus HOM05D002159 ORTHO05D005625 3.3e-55 218.8 169 66.3
arahy.Tifrunner.gnm1.ann1.F9YRCX Arachis hypogaea HOM05D002159 ORTHO05D005625 4.3e-55 218.4 169 65.1
arahy.Tifrunner.gnm1.ann1.JGS186 Arachis hypogaea HOM05D002159 ORTHO05D005625 4.3e-55 218.4 169 65.1
AUR62015961 Chenopodium quinoa HOM05D002159 ORTHO05D005625 4.3e-55 218.4 169 66.3
ECA238G4262 Erigeron canadensis HOM05D002159 ORTHO05D005625 4.3e-55 218.4 169 64.5
Psat0s2150g0160 Pisum sativum HOM05D002159 ORTHO05D005625 4.3e-55 218.4 169 65.7
Aa31LG11G3180 Aethionema arabicum HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 64.5
A06p34690 Brassica napus HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 65.1
BraA06t26396Z Brassica rapa HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 65.1
FAN03G0857 Fragaria x ananassa HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 66.3
Gohir.A12G256700 Gossypium hirsutum HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 65.7
Gohir.D12G258000 Gossypium hirsutum HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 65.7
Hund04761 Selenicereus undatus HOM05D002159 ORTHO05D005625 5.7e-55 218.0 168 65.5
Sc13g0008820 Simmondsia chinensis HOM05D002159 ORTHO05D005625 5.7e-55 218.0 169 63.9
Actinidia25881 Actinidia chinensis HOM05D002159 ORTHO05D005625 7.4e-55 217.6 169 65.7
FAN06G4426 Fragaria x ananassa HOM05D002159 ORTHO05D005625 7.4e-55 217.6 173 65.3
CARHR189680 Cardamine hirsuta HOM05D002159 ORTHO05D005625 9.6e-55 217.2 169 65.1
CDE06G0059 Ceratophyllum demersum HOM05D002159 ORTHO05D005625 9.6e-55 217.2 169 63.9
SGA_v2.0_scaffold10G05332 Striga asiatica HOM05D002159 ORTHO05D005625 9.6e-55 217.2 169 66.3
AUR62021167 Chenopodium quinoa HOM05D002159 ORTHO05D005625 2.1e-54 216.1 168 66.1
Ca_14555_v3 Cicer arietinum L. HOM05D002159 ORTHO05D005625 2.1e-54 216.1 169 65.1
FvH4_7g29660 Fragaria vesca HOM05D002159 ORTHO05D005625 2.1e-54 216.1 169 65.7
FAN06G3579 Fragaria x ananassa HOM05D002159 ORTHO05D005625 2.1e-54 216.1 169 65.7
Gorai.008G276300 Gossypium raimondii HOM05D002159 ORTHO05D005625 2.1e-54 216.1 169 65.1
Nn1g01521 Nelumbo nucifera HOM05D002159 ORTHO05D005625 2.1e-54 216.1 169 64.5
Sed0009742 Sechium edule HOM05D002159 ORTHO05D005625 2.1e-54 216.1 169 64.5
DCAR_026334 Daucus carota HOM05D002159 ORTHO05D005625 2.8e-54 215.7 169 63.9
QL09p013785 Quercus lobata HOM05D002159 ORTHO05D005625 2.8e-54 215.7 169 63.3
Rhsim03G0187300 Rhododendron simsii HOM05D002159 ORTHO05D005625 2.8e-54 215.7 169 65.1
CANSAT21G0489 Cannabis sativa HOM05D002159 ORTHO05D005625 4.8e-54 214.9 169 64.5
FAN03G1172 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.2e-54 214.5 169 65.1
FAN10G0118 Fragaria x ananassa HOM05D002159 ORTHO05D005625 6.2e-54 214.5 169 65.7
Medtr1g050492 Medicago truncatula HOM05D002159 ORTHO05D005625 8.2e-54 214.2 169 64.5
vmacro06665 Vaccinium macrocarpon HOM05D002159 ORTHO05D005625 8.2e-54 214.2 169 64.5
Haze_13669 Corylus avellana HOM05D002159 ORTHO05D005625 1.1e-53 213.8 169 63.3
Ah.13g068620 Amaranthus hybridus HOM05D002159 ORTHO05D005625 1.4e-53 213.4 168 64.3
FAN01G0872 Fragaria x ananassa HOM05D002159 ORTHO05D005625 3.1e-53 212.2 169 64.5
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 3.1e-53 212.2 163 65.6
Cfa023191 Carpinus fangiana HOM05D002159 ORTHO05D005625 1.7e-51 206.5 164 62.2
Aqoxy7G00327 Aquilegia oxysepala HOM05D002159 ORTHO05D005625 3.8e-51 205.3 169 61.5
ATR0680G292 Amborella trichopoda HOM05D002159 ORTHO05D005625 6.5e-51 204.5 169 60.9
HPP92_025733 Vanilla planifolia HOM05D002159 ORTHO05D005625 4.2e-50 201.8 168 61.3
HPP92_025730 Vanilla planifolia HOM05D002159 ORTHO05D005625 5.5e-50 201.4 168 60.7
PSO478G3748 Papaver somniferum HOM05D002159 ORTHO05D005625 3.7e-46 188.7 169 57.4
PSO782G0249 Papaver somniferum HOM05D002159 ORTHO05D005625 3.7e-46 188.7 169 57.4
Oeu028430.1 Olea europaea HOM05D002159 ORTHO05D005625 6.9e-45 184.5 114 79.8
Actinidia34125 Actinidia chinensis HOM05D002159 ORTHO05D005625 4.5e-44 181.8 157 60.5
MBI17_g39903_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D005625 7.7e-44 181.0 170 58.2
Os09g0569400 Oryza sativa ssp. japonica HOM05D002159 ORTHO05D005625 1.7e-43 179.9 165 55.8
Zm00001eb162800 Zea mays HOM05D002159 ORTHO05D005625 1.7e-43 179.9 165 57.0
Psat0s1874g0200 Pisum sativum HOM05D002159 ORTHO05D005625 5.0e-43 178.3 162 59.3
HPP92_025761 Vanilla planifolia HOM05D002159 ORTHO05D005625 3.0e-40 169.1 168 53.6
Glyma.11G171004 Glycine max HOM05D002159 ORTHO05D005625 7.4e-39 164.5 106 73.6
SMO111G0062 Selaginella moellendorffii HOM05D002159 ORTHO05D005625 6.3e-38 161.4 169 47.9
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 1.8e-37 159.8 165 51.5
Pp3c9_11100 Physcomitrium patens HOM05D002159 ORTHO05D005625 5.3e-37 158.3 169 47.9
Mapoly0007s0176 Marchantia polymorpha HOM05D002159 ORTHO05D005625 2.0e-36 156.4 167 47.3
AL6G35170 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.7e-35 153.3 98 75.5
AagrBONN_evm.TU.Sc2ySwM_117.3689 Anthoceros agrestis HOM05D002159 ORTHO05D005625 3.2e-34 149.1 168 46.4
CBR_g4749 Chara braunii HOM05D002159 ORTHO05D005625 9.4e-34 147.5 170 45.3
THA.LOC104821393 Tarenaya hassleriana HOM05D002159 ORTHO05D005625 9.7e-31 137.5 111 63.1
BcaNung01838 Brassica carinata HOM05D002159 ORTHO05D005625 1.4e-29 133.7 111 62.2
TPR.G8152 Trifolium pratense HOM05D002159 ORTHO05D005625 1.4e-29 133.7 111 61.3
Lj8C239G4 Lonicera japonica HOM05D002159 ORTHO05D005625 2.4e-29 132.9 111 61.3
MCO01G234 Micromonas commoda HOM05D002159 ORTHO05D005625 9.1e-29 131.0 170 40.6
MCO01G235 Micromonas commoda HOM05D002159 ORTHO05D005625 9.1e-29 131.0 170 40.6
SEGI_24581 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 4.5e-28 128.6 126 55.6
PRCOL_00000390 Prasinoderma coloniale HOM05D002159 ORTHO05D005625 5.9e-28 128.3 167 41.3
Cre12.g487600 Chlamydomonas reinhardtii HOM05D002159 ORTHO05D005625 6.1e-25 118.2 168 36.9
Glyma.11G170602 Glycine max HOM05D002159 ORTHO05D005625 1.4e-24 117.1 77 71.4
Glyma.11G171001 Glycine max HOM05D002159 ORTHO05D005625 6.7e-24 114.8 77 70.1
Haze_26919 Corylus avellana HOM05D002159 ORTHO05D005625 4.1e-21 105.5 169 33.7
TPR.G298 Trifolium pratense HOM05D002159 ORTHO05D005625 3.8e-19 99.0 50 88.0
AL6G35160 Arabidopsis lyrata HOM05D002159 ORTHO05D005625 1.1e-18 97.4 89 57.3
SEGI_13156 Sequoiadendron giganteum HOM05D002159 ORTHO05D005625 3.4e-15 85.9 54 68.5
BcaB06g27772 Brassica carinata HOM05D002159 ORTHO05D024008 1.2e-12 77.4 48 75.0
BcaB04g17556 Brassica carinata HOM05D002159 ORTHO05D024008 7.7e-12 74.7 48 75.0
BcaB01g03611 Brassica carinata HOM05D002159 ORTHO05D024008 1.7e-11 73.6 41 80.5
BcaB07g33285 Brassica carinata HOM05D002159 ORTHO05D024008 1.6e-09 67.0 43 72.1
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 3.4e-07 59.3 106 28.3


User provided reference genes

Program Settings