Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 2447.9 1215 100.0
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1255.7 1251 54.3
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1251.5 1245 54.7
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1246.1 1271 53.6
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1223.8 1230 53.8
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1214.1 1228 53.6
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1213.4 1235 53.2
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1209.9 1236 53.6
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1204.9 1228 53.4
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1198.0 1239 52.8
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1186.8 1250 52.6
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1185.2 1240 53.1
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1185.2 1246 52.3
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1184.5 1245 51.7
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1172.1 1241 52.0
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1166.4 1243 51.6
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1162.9 1243 51.3
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1154.0 1244 50.8
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1151.0 1244 51.0
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1149.8 1246 51.3
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1149.4 1244 51.0
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1146.3 1234 50.2
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1144.8 1226 50.6
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1143.6 1247 49.5
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1140.6 1251 50.1
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1137.9 1243 50.5
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1131.7 1248 49.0
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1127.1 1259 50.0
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1123.6 1308 47.9
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1121.3 1252 49.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1120.9 1220 51.0
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1119.0 1251 49.2
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1117.1 1246 48.0
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1114.4 1246 48.5
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1113.2 1223 49.2
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1112.8 1249 48.8
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1110.9 1227 50.4
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1108.2 1247 47.9
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1105.5 1255 48.0
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1100.9 1246 48.0
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1100.1 1225 50.1
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1100.1 1237 50.0
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1098.6 1207 49.1
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1098.2 1238 49.1
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1097.0 1241 49.4
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1097.0 1234 49.1
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1095.1 1239 49.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1094.3 1226 49.9
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1085.5 1228 49.8
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1083.2 1235 48.6
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1082.0 1244 48.3
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1081.2 1241 48.3
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1080.5 1240 48.9
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1079.3 1246 48.5
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1078.9 1248 48.4
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1078.9 1234 47.9
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1078.2 1249 48.9
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1078.2 1232 48.6
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1077.8 1237 49.2
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 1.7e-311 1073.2 1238 48.6
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 2.8e-310 1068.9 1231 49.2
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 3.7e-310 1068.5 1241 48.1
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 3.7e-310 1068.5 1256 47.6
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 2.4e-309 1065.8 1243 48.0
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 1.2e-308 1063.5 1223 46.9
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 1.2e-308 1063.5 1375 44.9
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 3.4e-308 1062.0 1259 48.2
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 5.9e-308 1061.2 1252 48.2
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 4.2e-306 1055.0 1240 47.7
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 2.7e-305 1052.4 1215 48.4
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 3.6e-305 1052.0 1223 48.1
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 8.0e-305 1050.8 1248 47.8
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 5.2e-304 1048.1 1239 47.9
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 5.2e-304 1048.1 1245 46.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 2.8e-302 1042.3 1238 47.1
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 8.2e-302 1040.8 1228 47.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 4.1e-301 1038.5 1228 47.3
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 2.0e-300 1036.2 1231 47.4
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 1.2e-297 1026.9 1231 46.7
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 6.1e-297 1024.6 1233 47.0
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 2.0e-295 1019.6 1231 46.3
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 2.0e-295 1019.6 1231 46.3
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 1.6e-292 1010.0 1242 46.5
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 3.2e-290 1002.3 1245 45.3
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 1.0e-288 997.3 1205 44.8
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 6.3e-286 988.0 1198 46.4
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 2.7e-284 982.6 1244 46.1
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 8.6e-283 977.6 1095 49.9
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 1.2e-279 967.2 1231 45.3
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 2.7e-276 956.1 1228 44.9
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 2.8e-273 946.0 1222 44.0
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 3.9e-267 925.6 1008 51.3
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 2.3e-264 916.4 1225 41.7
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 2.6e-263 912.9 1256 42.5
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 3.4e-255 885.9 1223 42.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.2e-252 877.5 1006 48.6
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 1.8e-248 863.6 880 52.0
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.6e-233 812.8 912 49.2
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 6.2e-225 785.4 1242 38.1
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.5e-210 736.9 1233 37.8
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 3.3e-202 709.9 1170 39.7
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 2.5e-197 693.7 1213 36.3
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 5.9e-191 672.5 1112 37.1
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.2e-175 621.7 834 42.2
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 6.1e-172 609.4 1189 34.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 5.6e-141 506.5 486 57.2
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 3.7e-108 397.5 1103 28.9
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.3e-97 362.5 542 37.8
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.1e-88 332.8 290 58.6
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 4.2e-80 304.3 319 55.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 9.4e-80 303.1 372 50.0
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.9e-78 297.7 434 39.6
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.3e-76 292.7 360 46.9
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.7e-66 258.5 599 32.1
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 6.3e-60 237.3 262 50.4
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 7.5e-45 187.2 151 62.9
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 7.8e-42 177.2 328 36.6
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.2e-36 159.1 173 49.1
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 8.3e-36 157.1 171 48.5
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.6e-34 152.9 320 35.3
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 3.5e-26 125.2 119 56.3
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 6.0e-26 124.4 697 24.1
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 6.2e-23 114.4 122 50.8
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 9.2e-19 100.5 126 44.4
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.1e-18 99.4 125 40.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 8.7e-09 67.4 77 46.8
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 3.6e-07 62.0 164 31.1


User provided reference genes

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