Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI06009 Sapria himalayana HOM05D000228 ORTHO05D030005 5.2e-54 214.2 110 100.0
Gohir.D03G132200 Gossypium hirsutum HOM05D000228 ORTHO05D001545 7.3e-16 87.4 53 84.9
Gorai.003G139100 Gossypium raimondii HOM05D000228 ORTHO05D001545 7.3e-16 87.4 53 84.9
Gohir.A03G036100 Gossypium hirsutum HOM05D000228 ORTHO05D001545 9.6e-16 87.0 53 83.0
Manes.17G000400 Manihot esculenta HOM05D000228 ORTHO05D001545 2.1e-15 85.9 53 81.1
COL.COLO4_18403 Corchorus olitorius HOM05D000228 ORTHO05D001545 4.7e-15 84.7 53 81.1
Haze_23976 Corylus avellana HOM05D000228 ORTHO05D001545 4.7e-15 84.7 53 77.4
Thecc.03G012000 Theobroma cacao HOM05D000228 ORTHO05D001545 2.4e-14 82.4 53 77.4
TWI75G1460 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 2.4e-14 82.4 53 77.4
Potri.001G341900 Populus trichocarpa HOM05D000228 ORTHO05D001545 3.1e-14 82.0 53 75.5
QL06p007429 Quercus lobata HOM05D000228 ORTHO05D001545 3.1e-14 82.0 53 75.5
Sabra16G0221600 Salix brachista HOM05D000228 ORTHO05D001545 3.1e-14 82.0 53 75.5
arahy.Tifrunner.gnm1.ann1.E1FMMY Arachis hypogaea HOM05D000228 ORTHO05D001545 6.9e-14 80.9 53 75.5
arahy.Tifrunner.gnm1.ann1.NH5KQA Arachis hypogaea HOM05D000228 ORTHO05D001545 6.9e-14 80.9 53 75.5
Duzib150G0751 Durio zibethinus HOM05D000228 ORTHO05D001545 1.5e-13 79.7 53 75.5
Sed0007851 Sechium edule HOM05D000228 ORTHO05D001545 1.5e-13 79.7 53 69.8
Ciclev10027681m.g Citrus clementina HOM05D000228 ORTHO05D001545 2.0e-13 79.3 53 75.5
Dinv27602 Davidia involucrata HOM05D000228 ORTHO05D001545 3.4e-13 78.6 53 75.5
MELO3C026854.2 Cucumis melo HOM05D000228 ORTHO05D001545 4.4e-13 78.2 53 67.9
CsaV3_1G012790 Cucumis sativus L. HOM05D000228 ORTHO05D001545 4.4e-13 78.2 53 67.9
Glyma.11G147317 Glycine max HOM05D000228 ORTHO05D001545 4.4e-13 78.2 53 71.7
Cfa011405 Carpinus fangiana HOM05D000228 ORTHO05D001545 5.8e-13 77.8 53 71.7
CiPaw.14G074800 Carya illinoinensis HOM05D000228 ORTHO05D001545 5.8e-13 77.8 53 71.7
Lalb_Chr01g0003921 Lupinus albus HOM05D000228 ORTHO05D001545 5.8e-13 77.8 53 71.7
MCO05G255 Micromonas commoda HOM05D000228 ORTHO05D001545 5.8e-13 77.8 56 67.9
ClCG03G002140 Citrullus lanatus HOM05D000228 ORTHO05D001545 7.6e-13 77.4 52 69.2
PGR119G1503 Punica granatum HOM05D000228 ORTHO05D001545 9.9e-13 77.0 53 67.9
Cpa.g.sc7.208 Carica papaya HOM05D000228 ORTHO05D001545 1.3e-12 76.6 53 73.6
Lj1g0011731 Lotus japonicus HOM05D000228 ORTHO05D001545 1.3e-12 76.6 53 73.6
COL.COLO4_14804 Corchorus olitorius HOM05D000228 ORTHO05D001545 1.7e-12 76.3 60 66.7
Eucgr.J02108 Eucalyptus grandis HOM05D000228 ORTHO05D001545 1.7e-12 76.3 53 69.8
VMungo1127G1617 Vigna mungo HOM05D000228 ORTHO05D001545 1.7e-12 76.3 53 69.8
GSVIVG01025079001 Vitis vinifera HOM05D000228 ORTHO05D001545 1.7e-12 76.3 53 71.7
MD03G1106800 Malus domestica HOM05D000228 ORTHO05D001545 2.9e-12 75.5 53 71.7
vmacro14493 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 2.9e-12 75.5 54 68.5
CSS0025979 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.8e-12 75.1 53 69.8
CSS0035598 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.8e-12 75.1 53 69.8
CANSAT56G4454 Cannabis sativa HOM05D000228 ORTHO05D001545 3.8e-12 75.1 53 67.9
Atru.chr3.3762 Acer truncatum HOM05D000228 ORTHO05D001545 6.4e-12 74.3 55 67.3
Psat7g221400 Pisum sativum HOM05D000228 ORTHO05D001545 8.4e-12 73.9 53 67.9
SMO143G0104 Selaginella moellendorffii HOM05D000228 ORTHO05D001545 1.1e-11 73.6 53 69.8
Lj8P495T18 Lonicera japonica HOM05D000228 ORTHO05D030005 1.4e-11 73.2 53 69.8
TPR.G2993 Trifolium pratense HOM05D000228 ORTHO05D001545 1.4e-11 73.2 53 66.0
CDE02G3052 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 1.9e-11 72.8 52 75.0
Ca_19216_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 1.9e-11 72.8 53 67.9
Lsat_1_v5_gn_9_21100 Lactuca sativa HOM05D000228 ORTHO05D001545 1.9e-11 72.8 53 64.2
Aa31LG1G12200 Aethionema arabicum HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 69.8
AL8G36630 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 67.9
AT5G60040 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 67.9
Carub.0008s2074 Capsella rubella HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 67.9
CARHR273660 Cardamine hirsuta HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 67.9
DCAR_018871 Daucus carota HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 69.8
Thhalv10012446m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 2.4e-11 72.4 53 67.9
ECA247G0560 Erigeron canadensis HOM05D000228 ORTHO05D001545 3.2e-11 72.0 53 62.3
HanXRQChr04g0106851 Helianthus annuus HOM05D000228 ORTHO05D001545 3.2e-11 72.0 53 62.3
PSO017G3640 Papaver somniferum HOM05D000228 ORTHO05D001545 3.2e-11 72.0 53 66.0
Phvul.011G070100 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 3.2e-11 72.0 53 67.9
Rhsim01G0223300 Rhododendron simsii HOM05D000228 ORTHO05D001545 3.2e-11 72.0 53 66.0
vmacro12980 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 3.2e-11 72.0 53 66.0
SEGI_24133 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 4.2e-11 71.6 53 69.8
SEGI_35958 Sequoiadendron giganteum HOM05D000228 ORTHO05D030005 4.2e-11 71.6 53 69.8
AUR62025018 Chenopodium quinoa HOM05D000228 ORTHO05D001545 5.4e-11 71.2 53 66.0
Migut.C00025 Erythranthe guttata HOM05D000228 ORTHO05D001545 7.1e-11 70.9 53 66.0
Mapoly0051s0017 Marchantia polymorpha HOM05D000228 ORTHO05D001545 7.1e-11 70.9 53 67.9
PRCOL_00001662 Prasinoderma coloniale HOM05D000228 ORTHO05D001545 7.1e-11 70.9 53 64.2
Sc19g0005360 Simmondsia chinensis HOM05D000228 ORTHO05D001545 7.1e-11 70.9 53 64.2
THA.LOC104810826 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 7.1e-11 70.9 53 66.0
Ah.04g153590 Amaranthus hybridus HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 60.4
FvH4_3g34290 Fragaria vesca HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 66.0
FAN11G3166 Fragaria x ananassa HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 66.0
FAN16G3688 Fragaria x ananassa HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 66.0
FAN21G2820 Fragaria x ananassa HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 66.0
HanXRQChr08g0230641 Helianthus annuus HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 62.3
Nn2g12369 Nelumbo nucifera HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 69.8
Prupe.6G089600 Prunus persica HOM05D000228 ORTHO05D001545 9.3e-11 70.5 52 65.4
RcHm_v2.0_Chr5g0061861 Rosa chinensis HOM05D000228 ORTHO05D001545 9.3e-11 70.5 53 66.0
Actinidia03765 Actinidia chinensis HOM05D000228 ORTHO05D001545 1.2e-10 70.1 53 67.9
AUR62006512 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.2e-10 70.1 52 63.5
TAR623G0006 Trochodendron aralioides HOM05D000228 ORTHO05D001545 1.2e-10 70.1 53 71.7
AagrBONN_evm.TU.Sc2ySwM_362.2196 Anthoceros agrestis HOM05D000228 ORTHO05D001545 1.6e-10 69.7 53 67.9
CAN.G1190.18 Capsicum annuum HOM05D000228 ORTHO05D001545 1.6e-10 69.7 53 64.2
Migut.A00876 Erythranthe guttata HOM05D000228 ORTHO05D001545 2.1e-10 69.3 53 64.2
Nitab4.5_0004015g0070 Nicotiana tabacum HOM05D000228 ORTHO05D001545 2.1e-10 69.3 53 64.2
Nitab4.5_0004839g0020 Nicotiana tabacum HOM05D000228 ORTHO05D001545 2.1e-10 69.3 53 64.2
Os04g0492300 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 2.1e-10 69.3 53 66.0
Sp6g21700 Schrenkiella parvula HOM05D000228 ORTHO05D001545 2.7e-10 68.9 53 66.0
Solyc11g072730.2 Solanum lycopersicum HOM05D000228 ORTHO05D001545 2.7e-10 68.9 53 64.2
Sopen11g030400 Solanum pennellii HOM05D000228 ORTHO05D001545 2.7e-10 68.9 53 64.2
A02p06630 Brassica napus HOM05D000228 ORTHO05D001545 3.5e-10 68.6 53 66.0
BolC2t07289H Brassica oleracea HOM05D000228 ORTHO05D001545 3.5e-10 68.6 53 66.0
BraA02t05745Z Brassica rapa HOM05D000228 ORTHO05D001545 3.5e-10 68.6 53 66.0
CBR_g21008 Chara braunii HOM05D000228 ORTHO05D001545 3.5e-10 68.6 56 64.3
Pp3c17_4860 Physcomitrium patens HOM05D000228 ORTHO05D001545 3.5e-10 68.6 53 66.0
Aqoxy4G03124 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 4.6e-10 68.2 53 64.2
Cc00_g14860 Coffea canephora HOM05D000228 ORTHO05D001545 4.6e-10 68.2 56 60.7
MD09G1157000 Malus domestica HOM05D000228 ORTHO05D001545 4.6e-10 68.2 53 64.2
Medtr4g061800 Medicago truncatula HOM05D000228 ORTHO05D001545 4.6e-10 68.2 53 62.3
Cre03.g165750 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D001545 6.0e-10 67.8 53 62.3
ECA233G1127 Erigeron canadensis HOM05D000228 ORTHO05D001545 6.0e-10 67.8 53 56.6
FvH4_6g15630 Fragaria vesca HOM05D000228 ORTHO05D001545 7.8e-10 67.4 53 64.2
FAN14G3914 Fragaria x ananassa HOM05D000228 ORTHO05D001545 7.8e-10 67.4 53 64.2
RcHm_v2.0_Chr3g0469301 Rosa chinensis HOM05D000228 ORTHO05D001545 7.8e-10 67.4 53 64.2
ATR0594G163 Amborella trichopoda HOM05D000228 ORTHO05D001545 1.0e-09 67.0 53 66.0
MSTRG.17722 Avicennia marina HOM05D000228 ORTHO05D001545 1.0e-09 67.0 53 64.2
Medtr4g061700 Medicago truncatula HOM05D000228 ORTHO05D001545 1.0e-09 67.0 53 64.2
SGA_v2.0_scaffold110G31200 Striga asiatica HOM05D000228 ORTHO05D001545 1.0e-09 67.0 53 64.2
EL10Ac3g06609 Beta vulgaris HOM05D000228 ORTHO05D001545 1.3e-09 66.6 53 60.4
Zm00001eb078830 Zea mays HOM05D000228 ORTHO05D001545 1.3e-09 66.6 53 64.2
CAN.G84.13 Capsicum annuum HOM05D000228 ORTHO05D001545 3.0e-09 65.5 53 60.4
Peaxi162Scf00616g00511 Petunia axillaris HOM05D000228 ORTHO05D001545 3.0e-09 65.5 53 60.4
Lsat_1_v5_gn_2_6980 Lactuca sativa HOM05D000228 ORTHO05D001545 1.1e-08 63.5 53 56.6
Peaxi162Scf00616g00621 Petunia axillaris HOM05D000228 ORTHO05D001545 1.5e-08 63.2 68 51.5
FAN02G1542 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.5e-08 62.4 53 60.4
PSO384G5084 Papaver somniferum HOM05D000228 ORTHO05D001545 2.5e-08 62.4 53 58.5
PSO699G0040 Papaver somniferum HOM05D000228 ORTHO05D001545 2.5e-08 62.4 53 58.5
Cfa021868 Carpinus fangiana HOM05D000228 ORTHO05D001545 5.6e-08 61.2 61 50.8
Aqoxy4G03122 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 9.6e-08 60.5 60 56.7
EL10Ac1g02243 Beta vulgaris HOM05D000228 ORTHO05D001545 6.2e-07 57.8 47 57.4
HPP92_005963 Vanilla planifolia HOM05D000228 ORTHO05D001545 1.4e-06 56.6 53 49.1
Haze_26119 Corylus avellana HOM05D000228 ORTHO05D001545 3.1e-06 55.5 53 54.7


User provided reference genes

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