Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI05866 Sapria himalayana HOM05D000912 ORTHO05D013129 1.4e-84 316.2 163 100.0
Prupe.3G028200 Prunus persica HOM05D000912 ORTHO05D001232 3.2e-36 155.6 152 56.6
Potri.014G000500 Populus trichocarpa HOM05D000912 ORTHO05D001232 2.1e-35 152.9 152 56.6
TWI75G1589 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 4.7e-35 151.8 139 57.6
Thecc.06G049100 Theobroma cacao HOM05D000912 ORTHO05D001232 1.8e-34 149.8 147 57.8
Sabra07G0002500 Salix brachista HOM05D000912 ORTHO05D001232 3.0e-34 149.1 134 58.2
Prupe.7G030400 Prunus persica HOM05D000912 ORTHO05D001232 2.0e-33 146.4 152 55.3
Ciclev10027674m.g Citrus clementina HOM05D000912 ORTHO05D001232 3.4e-33 145.6 145 59.3
FAN09G3798 Fragaria x ananassa HOM05D000912 ORTHO05D001232 4.4e-33 145.2 152 52.6
Dinv37769 Davidia involucrata HOM05D000912 ORTHO05D001232 7.5e-33 144.4 146 54.8
Duzib235G0834 Durio zibethinus HOM05D000912 ORTHO05D001232 7.5e-33 144.4 148 56.1
FAN14G0321 Fragaria x ananassa HOM05D000912 ORTHO05D001232 7.5e-33 144.4 153 53.6
FAN14G4043 Fragaria x ananassa HOM05D000912 ORTHO05D001232 7.5e-33 144.4 153 53.6
Sabra14G0003100 Salix brachista HOM05D000912 ORTHO05D001232 7.5e-33 144.4 153 56.2
TWI12G0824 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 1.3e-32 143.7 144 54.9
Dinv20312 Davidia involucrata HOM05D000912 ORTHO05D001232 1.7e-32 143.3 146 54.1
Haze_16248 Corylus avellana HOM05D000912 ORTHO05D001232 2.2e-32 142.9 148 58.1
FAN02G2903 Fragaria x ananassa HOM05D000912 ORTHO05D001232 3.7e-32 142.1 152 52.0
FAN05G3420 Fragaria x ananassa HOM05D000912 ORTHO05D001232 6.3e-32 141.4 152 51.3
FvH4_6g36320 Fragaria vesca HOM05D000912 ORTHO05D001232 1.1e-31 140.6 153 53.6
Cfa014793 Carpinus fangiana HOM05D000912 ORTHO05D001232 1.8e-31 139.8 145 58.6
Hma1.2p1_0108F.1_g051710 Hydrangea macrophylla HOM05D000912 ORTHO05D001232 2.4e-31 139.4 162 51.2
TWI18G1361 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 3.1e-31 139.0 144 54.2
Manes.14G000600 Manihot esculenta HOM05D000912 ORTHO05D001232 5.4e-31 138.3 153 51.0
Duzib192G0163 Durio zibethinus HOM05D000912 ORTHO05D001232 7.0e-31 137.9 152 52.6
Hma1.2p1_0960F.1_g241630 Hydrangea macrophylla HOM05D000912 ORTHO05D001232 1.0e-29 134.0 148 53.4
COL.COLO4_26805 Corchorus olitorius HOM05D000912 ORTHO05D001232 1.7e-29 133.3 147 51.7
Cc11_g00260 Coffea canephora HOM05D000912 ORTHO05D001232 2.3e-29 132.9 144 52.1
Lj7C414G2 Lonicera japonica HOM05D000912 ORTHO05D001232 2.9e-29 132.5 149 51.0
Manes.14G000700 Manihot esculenta HOM05D000912 ORTHO05D001232 5.0e-29 131.7 153 50.3
QL05p085111 Quercus lobata HOM05D000912 ORTHO05D001232 5.0e-29 131.7 154 52.6
MD09G1170000 Malus domestica HOM05D000912 ORTHO05D001232 1.1e-28 130.6 152 50.7
Atru.chr3.4082 Acer truncatum HOM05D000912 ORTHO05D001232 4.2e-28 128.6 146 53.4
CiPaw.02G050600 Carya illinoinensis HOM05D000912 ORTHO05D001232 4.2e-28 128.6 152 52.6
CSS0005184 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D001232 2.8e-27 125.9 154 50.0
CSS0006911 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D001232 2.8e-27 125.9 154 50.0
HanXRQChr09g0266961 Helianthus annuus HOM05D000912 ORTHO05D001232 2.8e-27 125.9 148 50.0
Lsat_1_v5_gn_4_131340 Lactuca sativa HOM05D000912 ORTHO05D001232 6.1e-27 124.8 141 49.6
Sed0017205 Sechium edule HOM05D000912 ORTHO05D001232 1.0e-26 124.0 144 50.7
arahy.Tifrunner.gnm1.ann1.DM6RAW Arachis hypogaea HOM05D000912 ORTHO05D001232 1.8e-26 123.2 144 49.3
ClCG10G000030 Citrullus lanatus HOM05D000912 ORTHO05D001232 1.8e-26 123.2 145 47.6
MELO3C013698.2 Cucumis melo HOM05D000912 ORTHO05D001232 2.3e-26 122.9 146 47.9
CiPaw.02G051600 Carya illinoinensis HOM05D000912 ORTHO05D001232 3.0e-26 122.5 153 51.6
Nitab4.5_0010895g0020 Nicotiana tabacum HOM05D000912 ORTHO05D001232 4.0e-26 122.1 158 50.0
Sed0017344 Sechium edule HOM05D000912 ORTHO05D001232 4.0e-26 122.1 144 47.9
Cpa.g.sc10.17 Carica papaya HOM05D000912 ORTHO05D001232 5.2e-26 121.7 157 50.3
Gohir.D06G118100 Gossypium hirsutum HOM05D000912 ORTHO05D001232 5.2e-26 121.7 144 50.0
Gohir.A10G000900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 6.8e-26 121.3 153 47.1
Gorai.010G135700 Gossypium raimondii HOM05D000912 ORTHO05D001232 8.9e-26 120.9 144 49.3
arahy.Tifrunner.gnm1.ann1.PZ05LS Arachis hypogaea HOM05D000912 ORTHO05D001232 1.2e-25 120.6 144 48.6
Gohir.A06G182500 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.2e-25 120.6 151 49.0
Gorai.010G222100 Gossypium raimondii HOM05D000912 ORTHO05D001232 1.2e-25 120.6 151 49.0
Actinidia38823 Actinidia chinensis HOM05D000912 ORTHO05D001232 1.5e-25 120.2 144 50.0
CsaV3_3G000040 Cucumis sativus L. HOM05D000912 ORTHO05D001232 1.5e-25 120.2 146 47.3
Gohir.D10G001100 Gossypium hirsutum HOM05D000912 ORTHO05D001232 2.0e-25 119.8 153 46.4
Gorai.011G001400 Gossypium raimondii HOM05D000912 ORTHO05D001232 2.0e-25 119.8 153 46.4
Nitab4.5_0000129g0360 Nicotiana tabacum HOM05D000912 ORTHO05D001232 2.6e-25 119.4 148 49.3
CSS0008849 Camellia sinensis var. sinensis HOM05D000912 ORTHO05D001232 3.4e-25 119.0 122 54.1
GSVIVG01029442001 Vitis vinifera HOM05D000912 ORTHO05D001232 3.4e-25 119.0 143 50.3
Gohir.A05G116900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 4.4e-25 118.6 132 53.0
Gohir.D06G189400 Gossypium hirsutum HOM05D000912 ORTHO05D001232 4.4e-25 118.6 151 48.3
CAN.G880.12 Capsicum annuum HOM05D000912 ORTHO05D001232 7.5e-25 117.9 142 49.3
Oeu036757.1 Olea europaea HOM05D000912 ORTHO05D001232 7.5e-25 117.9 149 47.7
DCAR_013192 Daucus carota HOM05D000912 ORTHO05D001232 1.3e-24 117.1 164 47.0
Glyma.07G000400 Glycine max HOM05D000912 ORTHO05D001232 1.7e-24 116.7 153 48.4
HanXRQChr11g0326491 Helianthus annuus HOM05D000912 ORTHO05D001232 2.2e-24 116.3 144 50.7
Phvul.010G165900 Phaseolus vulgaris HOM05D000912 ORTHO05D001232 3.7e-24 115.5 134 49.3
ECA247G1226 Erigeron canadensis HOM05D000912 ORTHO05D001232 6.3e-24 114.8 150 47.3
Nn2g12790 Nelumbo nucifera HOM05D000912 ORTHO05D001232 8.3e-24 114.4 155 47.1
Glyma.08G226700 Glycine max HOM05D000912 ORTHO05D001232 1.4e-23 113.6 135 49.6
Potri.007G003301 Populus trichocarpa HOM05D000912 ORTHO05D011835 1.4e-23 113.6 118 56.8
Nn8g41285 Nelumbo nucifera HOM05D000912 ORTHO05D001232 2.4e-23 112.8 146 47.9
VMungo0331G0786 Vigna mungo HOM05D000912 ORTHO05D001232 2.4e-23 112.8 134 48.5
Actinidia21902 Actinidia chinensis HOM05D000912 ORTHO05D001232 3.2e-23 112.5 146 47.9
RcHm_v2.0_Chr2g0148331 Rosa chinensis HOM05D000912 ORTHO05D001232 3.2e-23 112.5 153 46.4
THA.LOC104812346 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 3.2e-23 112.5 148 48.0
Sopen04g003770 Solanum pennellii HOM05D000912 ORTHO05D001232 4.1e-23 112.1 140 47.9
SGA_v2.0_scaffold49G18366 Striga asiatica HOM05D000912 ORTHO05D001232 4.1e-23 112.1 154 44.2
Oeu027255.1 Olea europaea HOM05D000912 ORTHO05D001232 5.4e-23 111.7 145 45.5
ECA232G2502 Erigeron canadensis HOM05D000912 ORTHO05D001232 9.2e-23 110.9 144 45.1
THA.LOC104808111 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 9.2e-23 110.9 148 50.7
Lj3g0006194 Lotus japonicus HOM05D000912 ORTHO05D001232 1.6e-22 110.2 137 49.6
Psat7g264600 Pisum sativum HOM05D000912 ORTHO05D001232 2.7e-22 109.4 145 46.2
CANSAT01G3172 Cannabis sativa HOM05D000912 ORTHO05D001232 1.0e-21 107.5 135 48.1
Solyc04g008610.3 Solanum lycopersicum HOM05D000912 ORTHO05D001232 1.0e-21 107.5 145 46.2
ECA246G3011 Erigeron canadensis HOM05D000912 ORTHO05D001232 1.3e-21 107.1 138 44.9
vmacro21728 Vaccinium macrocarpon HOM05D000912 ORTHO05D001232 2.3e-21 106.3 154 43.5
TAR636G0354 Trochodendron aralioides HOM05D000912 ORTHO05D001232 6.6e-21 104.8 151 45.7
Peaxi162Scf00097g01412 Petunia axillaris HOM05D000912 ORTHO05D001232 8.6e-21 104.4 150 43.3
Rhsim08G0252700 Rhododendron simsii HOM05D000912 ORTHO05D001232 8.6e-21 104.4 146 45.9
Nitab4.5_0003699g0060 Nicotiana tabacum HOM05D000912 ORTHO05D001232 1.1e-20 104.0 161 43.5
TPR.G38732 Trifolium pratense HOM05D000912 ORTHO05D001232 1.1e-20 104.0 135 45.2
Gorai.009G121700 Gossypium raimondii HOM05D000912 ORTHO05D001232 1.9e-20 103.2 143 45.5
Lalb_Chr19g0140521 Lupinus albus HOM05D000912 ORTHO05D001232 3.3e-20 102.4 137 45.3
Rhsim03G0000100 Rhododendron simsii HOM05D000912 ORTHO05D001232 3.3e-20 102.4 150 44.7
Peaxi162Scf00329g00813 Petunia axillaris HOM05D000912 ORTHO05D001232 4.3e-20 102.1 146 43.2
Actinidia00648 Actinidia chinensis HOM05D000912 ORTHO05D001232 7.3e-20 101.3 136 47.8
Ca_03788_v3 Cicer arietinum L. HOM05D000912 ORTHO05D001232 9.5e-20 100.9 136 45.6
TAR626G1203 Trochodendron aralioides HOM05D000912 ORTHO05D001232 9.5e-20 100.9 131 47.3
A02p22450 Brassica napus HOM05D000912 ORTHO05D001232 1.2e-19 100.5 145 46.2
BraA02t07249Z Brassica rapa HOM05D000912 ORTHO05D001232 1.2e-19 100.5 145 46.2
Lsat_1_v5_gn_3_90861 Lactuca sativa HOM05D001433 ORTHO05D013129 1.6e-19 100.1 117 47.9
Nitab4.5_0000069g0570 Nicotiana tabacum HOM05D000912 ORTHO05D001232 1.6e-19 100.1 161 42.2
vmacro12581 Vaccinium macrocarpon HOM05D000912 ORTHO05D001232 2.1e-19 99.8 150 44.0
HanXRQChr05g0150621 Helianthus annuus HOM05D000912 ORTHO05D001232 2.8e-19 99.4 144 43.1
Lsat_1_v5_gn_1_24881 Lactuca sativa HOM05D000912 ORTHO05D001232 2.8e-19 99.4 145 41.4
Lalb_Chr04g0264771 Lupinus albus HOM05D000912 ORTHO05D001232 2.8e-19 99.4 136 46.3
BcaC03g15858 Brassica carinata HOM05D000912 ORTHO05D001232 6.1e-19 98.2 147 44.9
BolC2t09626H Brassica oleracea HOM05D000912 ORTHO05D001232 8.0e-19 97.8 145 45.5
PSO017G2537 Papaver somniferum HOM05D000912 ORTHO05D001232 8.0e-19 97.8 150 43.3
Migut.H01257 Erythranthe guttata HOM05D000912 ORTHO05D001232 1.0e-18 97.4 149 40.9
PSO170G3675 Papaver somniferum HOM05D000912 ORTHO05D001232 1.8e-18 96.7 150 42.7
C02p36130 Brassica napus HOM05D000912 ORTHO05D001232 3.1e-18 95.9 147 44.2
CAN.G282.75 Capsicum annuum HOM05D000912 ORTHO05D001232 4.0e-18 95.5 150 41.3
Oeu011002.1 Olea europaea HOM05D000912 ORTHO05D001232 8.9e-18 94.4 149 42.3
Sopen01g003670 Solanum pennellii HOM05D000912 ORTHO05D001232 8.9e-18 94.4 141 42.6
Gohir.D05G117800 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.5e-17 93.6 142 41.5
Solyc01g008120.4 Solanum lycopersicum HOM05D000912 ORTHO05D001232 1.5e-17 93.6 141 42.6
SGA_v2.0_scaffold181G39745 Striga asiatica HOM05D000912 ORTHO05D001232 3.4e-17 92.4 158 41.1
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 4.4e-17 92.0 130 46.9
Carub.0002s2587 Capsella rubella HOM05D000912 ORTHO05D001232 4.4e-17 92.0 149 43.0
CARHR072670 Cardamine hirsuta HOM05D000912 ORTHO05D001232 4.4e-17 92.0 133 43.6
Medtr4g005050 Medicago truncatula HOM05D000912 ORTHO05D001232 9.8e-17 90.9 136 42.6
VMungo1080G1388 Vigna mungo HOM05D000912 ORTHO05D001232 9.8e-17 90.9 134 43.3
Glyma.15G000300 Glycine max HOM05D000912 ORTHO05D001232 1.3e-16 90.5 128 45.3
AT1G79000 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 2.9e-16 89.4 131 45.0
Aa31LG4G1980 Aethionema arabicum HOM05D000912 ORTHO05D001232 8.3e-16 87.8 131 45.0
Phvul.005G082300 Phaseolus vulgaris HOM05D000912 ORTHO05D001232 8.3e-16 87.8 125 44.0
AUR62001296 Chenopodium quinoa HOM05D000912 ORTHO05D001232 1.1e-15 87.4 148 40.5
Oeu054518.1 Olea europaea HOM05D000912 ORTHO05D001232 1.1e-15 87.4 144 41.7
AUR62025681 Chenopodium quinoa HOM05D000912 ORTHO05D001232 2.4e-15 86.3 148 39.9
MD17G1157100 Malus domestica HOM05D000912 ORTHO05D001232 5.4e-15 85.1 101 47.5
Oeu035306.2 Olea europaea HOM05D000912 ORTHO05D001232 5.4e-15 85.1 150 41.3
Oeu061990.1 Olea europaea HOM05D000912 ORTHO05D001232 5.4e-15 85.1 150 41.3
ATR1125G026 Amborella trichopoda HOM05D000912 ORTHO05D001232 9.2e-15 84.3 137 40.1
MSTRG.6589 Avicennia marina HOM05D000912 ORTHO05D001232 9.2e-15 84.3 162 38.9
Hund05659 Selenicereus undatus HOM05D000912 ORTHO05D001232 9.2e-15 84.3 148 40.5
SGA_v2.0_scaffold73G24406 Striga asiatica HOM05D000912 ORTHO05D001232 1.6e-14 83.6 164 40.2
Migut.M00129 Erythranthe guttata HOM05D000912 ORTHO05D001232 2.0e-14 83.2 127 44.9
Sp5g34050 Schrenkiella parvula HOM05D000912 ORTHO05D001232 2.0e-14 83.2 137 40.9
Sc23g0006050 Simmondsia chinensis HOM05D000912 ORTHO05D001232 2.7e-14 82.8 139 38.1
Lsat_1_v5_gn_6_111241 Lactuca sativa HOM05D000912 ORTHO05D001232 4.6e-14 82.0 132 37.9
Ah.08g218030 Amaranthus hybridus HOM05D000912 ORTHO05D001232 6.0e-14 81.6 148 37.2
EL10Ac7g18098 Beta vulgaris HOM05D000912 ORTHO05D001232 7.8e-14 81.3 148 39.2
PGR102G0551 Punica granatum HOM05D000912 ORTHO05D001232 3.0e-13 79.3 155 38.1
THA.LOC104813621 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 5.0e-13 78.6 143 39.9
MBI16_g40723_MAGBIO Magnolia biondii HOM05D000912 ORTHO05D001232 6.6e-13 78.2 110 45.5
HPP92_021886 Vanilla planifolia HOM05D000912 ORTHO05D001232 3.3e-12 75.9 142 38.0
Aqoxy7G02531 Aquilegia oxysepala HOM05D000912 ORTHO05D001232 5.6e-12 75.1 142 38.7
Lsat_1_v5_gn_8_69900 Lactuca sativa HOM05D001433 ORTHO05D013129 9.5e-12 74.3 76 53.9
Hund18548 Selenicereus undatus HOM05D000912 ORTHO05D001232 1.6e-11 73.6 142 37.3
AL1G28880 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 8.0e-11 71.2 121 39.7
Psat3g106120 Pisum sativum HOM05D000936 ORTHO05D023081 8.0e-11 71.2 100 42.0
unitig_62.g23240 Utricularia gibba HOM05D000912 ORTHO05D001232 1.1e-10 70.9 120 42.5
Psat3g106040 Pisum sativum HOM05D000912 ORTHO05D023081 1.8e-10 70.1 89 47.2
AL2G39460 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 4.0e-10 68.9 133 37.6
Ah.15g094210 Amaranthus hybridus HOM05D000912 ORTHO05D001232 1.5e-09 67.0 143 35.0
Carub.0001s1645 Capsella rubella HOM05D000912 ORTHO05D001232 1.5e-09 67.0 118 38.1
Thhalv10018000m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 2.0e-09 66.6 140 36.4
A08p31320 Brassica napus HOM05D000912 ORTHO05D001232 3.4e-09 65.9 120 38.3
BraA08t35055Z Brassica rapa HOM05D000912 ORTHO05D001232 3.4e-09 65.9 157 35.0
Aqoxy7G02557 Aquilegia oxysepala HOM05D000912 ORTHO05D001232 5.8e-09 65.1 92 43.5
SEGI_02527 Sequoiadendron giganteum HOM05D000912 ORTHO05D001232 9.8e-09 64.3 101 39.6
Actinidia31119 Actinidia chinensis HOM05D000912 ORTHO05D001232 1.3e-08 63.9 119 39.5
A07p44140 Brassica napus HOM05D000912 ORTHO05D001232 1.3e-08 63.9 131 37.4
BraA07t31922Z Brassica rapa HOM05D000912 ORTHO05D001232 1.3e-08 63.9 131 37.4
AL3G24680 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 1.7e-08 63.5 114 38.6
CARHR087520 Cardamine hirsuta HOM05D000912 ORTHO05D001232 1.7e-08 63.5 122 36.9
THA.LOC104810279 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 2.2e-08 63.2 143 35.0
DCAR_011706 Daucus carota HOM05D000912 ORTHO05D001232 2.9e-08 62.8 109 41.3
BcaC08g47464 Brassica carinata HOM05D000912 ORTHO05D001232 4.9e-08 62.0 128 37.5
BolC6t40305H Brassica oleracea HOM05D000912 ORTHO05D001232 4.9e-08 62.0 128 37.5
Thhalv10006544m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 4.9e-08 62.0 152 36.2
A06p12680 Brassica napus HOM05D000912 ORTHO05D001232 1.1e-07 60.8 150 38.0
C06p52870 Brassica napus HOM05D000912 ORTHO05D001232 1.4e-07 60.5 128 36.7
Zm00001eb209230 Zea mays HOM05D000912 ORTHO05D001232 1.4e-07 60.5 123 34.1
Zm00001eb231830 Zea mays HOM05D000912 ORTHO05D001232 3.2e-07 59.3 155 33.5
BraA06t24428Z Brassica rapa HOM05D000912 ORTHO05D001232 9.2e-07 57.8 142 38.0
Sp1g14860 Schrenkiella parvula HOM05D000912 ORTHO05D001232 9.2e-07 57.8 130 36.2
SEGI_27102 Sequoiadendron giganteum HOM05D000912 ORTHO05D001232 9.2e-07 57.8 104 37.5
AT3G12980 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 2.1e-06 56.6 114 36.8
BolC8t49377H Brassica oleracea HOM05D000912 ORTHO05D001232 2.1e-06 56.6 111 36.9
C08p17500 Brassica napus HOM05D000912 ORTHO05D001232 2.7e-06 56.2 137 35.0


User provided reference genes

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